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2024-05-08 11:49:52, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Cheilinus undulatus small nucleolar RNA SNORA13 (LOC121514350), ncRNA. (136 bp)
inference="COORDINATES: nucleotide motif:Rfam:12.0:RF00396" /inference="COORDINATES: profile:INFERNAL:1.1.1" /db_xref="GeneID:121514350" /db_xref="RFAM:RF00396" ORIGIN // tgcctttatgtgttgccctttcatcatttccttggtgatcgggtgtcaaataaggcatacagggaaacttgtgactgccctttttgtttaaagagttttattcgactctattacacaaacagttgcaagaacaaat
position 122
XR_005992293.1 - Cheilinus undulatus (humphead wrasse) - NCBI
PREDICTED: Rhincodon typus uncharacterized LOC125485222 (LOC125485222), ncRNA. (265 bp)
lncRNA" /gene="LOC125485222" /product="uncharacterized LOC125485222" /db_xref="GeneID:125485222" ORIGIN // tcggaggctggcagagcacgagaaggaggagaagagcaaggagtgtgagctgtggcatcagaaacacaatatccttaatgacatgctgaggagtcaagagaaggctgaaagaaaaaaataaagcttgtcaagccaaattccagacttacttgctgtgcaggacagaatgtgaccagcagctgtgttgcaagaacaaatgacaggactccgaagagttttgtggaaggagagcgagtgcactttactgaagctgatgcccaggtgc
position 184
XR_007263960.1 - Rhincodon typus (whale shark) - NCBI
PREDICTED: Cucurbita maxima uncharacterized LOC111493425 (LOC111493425), ncRNA. (287 bp)
ncRNA_class="lncRNA" /gene="LOC111493425" /product="uncharacterized LOC111493425" /db_xref="GeneID:111493425" ORIGIN // aactcatataaagcaatacaaacactcgttccttcaccaacacaaacattcactctcaaaggcatgcttcaaaatactgagaggatgaagatgagacgtgtagcggttggcgtagtgatggtgtttatgattatcaacactttgtttgttgctgatggaaggcacttgaagttgcaagaacaaagggatgagaaccaaaacttggaagccaaaaagcactatgaaactaatgaatacaatcaccatggatgctatagaagtgactataattgttggagcaacagaaa
position 171
XR_002720009.1 - Cucurbita maxima (winter squash) - NCBI
PREDICTED: Saccostrea echinata uncharacterized LOC133193701 (LOC133193701), ncRNA. (255 bp)
xref="GeneID:133193701" ncRNA 1..255 /ncRNA_class="lncRNA" /gene="LOC133193701" /product="uncharacterized LOC133193701" /db_xref="GeneID:133193701" ORIGIN // gacaagaagaatgtatctaaacaatggaccaaattatcttgcacatgttgatgggtactacaagttgaagccatttggcttcgctatacatggtgcaatgtgtggattttcaagacgaatactatggcttaaagttgcaagaacaaacaatgactcctttgttgtagcatcatatttcttgaaattcctggaggaaataaatagtgctccaaggtgtgagacttgatgctggaactgagaatatatacattgagg
position 134
XR_009721977.1 - Saccostrea echinata - NCBI
PREDICTED: Saccostrea echinata uncharacterized LOC133190778 (LOC133190778), ncRNA. (283 bp)
using gene prediction method: Gnomon." /db_xref="GeneID:133190778" ncRNA 1..283 /ncRNA_class="lncRNA" /gene="LOC133190778" /product="uncharacterized LOC133190778" /db_xref="GeneID:133190778" ORIGIN // atgttgatgggtacgacaagttgaagccatttggcttcgctatacatggtgcaatgtgtggattttcaagacgaatactatggcttaaagttgcaagaacaaacaatgactcttttgttgtagcatcatatttcttgaaatacctggaggaaataaatagtgctccaaggtgtgtgagacttgatgctggaactgagaatatatacattgaggacattcaaaaatccttccgttggtacgataatgatgacatgtgtggagaaaaaagtgtaatcaaaggaag
position 90
XR_009721613.1 - Saccostrea echinata - NCBI
PREDICTED: Crassostrea virginica uncharacterized LOC111121231 (LOC111121231), ncRNA. (334 bp)
all annotated introns" /db_xref="GeneID:111121231" ncRNA 1..334 /ncRNA_class="lncRNA" /gene="LOC111121231" /product="uncharacterized LOC111121231" /db_xref="GeneID:111121231" ORIGIN // ccaaattacctggtacatgttaatgggtaagacaagttaaaaccatttggtttcgctatacatggtgcaatgtgtggattttcaagacgaatactatggcttaaagttgcaagaacaaacaatgacccttctgttgtagcatcatatttcttgaaatacctggaggaaataaatagtgctccaagagaatagaacgctggtggagaacactgagagagatgggcatctccttttggatacacttgttcaaagatatggaagaccaaggaatgttttcatcagcaaataacgagcacatagaatgcctccgcttctatctcacaaaaataataca
position 106
XR_002637740.1 - Crassostrea virginica (eastern oyster) - NCBI
PREDICTED: Rhipicephalus sanguineus uncharacterized LOC119400972 (LOC119400972), ncRNA. (355 bp)
ncRNA_class="lncRNA" /gene="LOC119400972" /product="uncharacterized LOC119400972" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:119400972" ORIGIN // aagcctgcctcgctataagccagatcacgcctcgttattggtgcatgaaccatggcgaagacttcaagcttgcagcgaattgtcgttgtggctgcattagcctttcttctgtcgacgttgcaagaacaaagcagctttcgtgccactgcaagaaagacgccttgcaggaaccctaaatttctatgccccgaggaaatacggcgtcgtgaagaggagaggaggatgtgggtgtcttcgtacttatccggtccaaagcctcgggcagatccagacttgggtgcctagggaatttgcttgcagcaatggtgcaattctcaaatgagaacttctaaataaatctatcttgcttcaggaa
position 117
XR_005185330.2 - Rhipicephalus sanguineus (brown dog tick) - NCBI
PREDICTED: Saccostrea echinata uncharacterized LOC133191825 (LOC133191825), ncRNA. (332 bp)
ORIGIN // ctgtggacagactcttcttgggtgtcgttcgatgaaacgaagacttcttcagaaacatggcatctttataggaagggataacatgttgtgtttattgagaataatcgatcctgacggagttgatctaagagcaagtcactgcttgacaagaagaatgtatctaaacaatggaccaaattatcttgcacatgttgatgggtacgacaagttgaagccatttggcttcgctatacatggtgcaatgtgtggattttcaagacgaatactatggcttaaagttgcaagaacaaacaatgacccttttgttgtagcatcatatttcttgaaatacc
position 278
XR_009721747.1 - Saccostrea echinata - NCBI
PREDICTED: Crassostrea virginica uncharacterized LOC111137458 (LOC111137458), ncRNA. (379 bp)
taaaggaggaaatgatgtttagtggacagactcttgggtgtcgctcaatgaaacggagacttcttcagaaacatggcatctttatgggaagggatgacgtgctgtgtttattgagaataattgaccctgatggagttgatataagagcaagtcactgtttgacaagaagaatgtatctaaacaatggaccaaattacctggtacatgttgatgggtacgacaagttaaaaccatttggtttcgctatacatggtgcaatgtgtggattttcaggacgaatactatggcttaaagttgcaagaacaaacaatgacccttctgttgtacgtag
position 342
XR_002639879.1 - Crassostrea virginica (eastern oyster) - NCBI
PREDICTED: Tarenaya hassleriana defensin-like protein 183 (LOC104814662), mRNA. (361 bp)
db_xref="GeneID:104814662" /translation="MAKVSSIFILFSLFLLFTGGLERVTCREAKDICTKGFGLCTKDCDINCCKNKCAGEILGGQGSCDSIANVVLCNCYYHC" ORIGIN // aaaaacctaaagatggccaaggtttcttcaatcttcatcctcttctccctcttcctccttttcacaggagggttggagagggtgacgtgtcgtgaggcgaaggatatatgcaccaaagggttcgggctttgcaccaaagactgcgacatcaactgttgcaagaacaaatgcgcaggtgagatcttaggtggtcagggcagctgcgactccatcgccaacgttgtcctctgcaattgctactaccattgttaagctctcattcaaatatatatttacggtgttatattccgtatataataagacgatgtttctcttgatgtttccaattatgtggttctcacaattatattatttaataaaa
position 155
XM_010542827.1 - Tarenaya hassleriana - NCBI
PREDICTED: Gigantopelta aegis uncharacterized LOC121389490 (LOC121389490), ncRNA. (550 bp)
ggtgcacgggcagtgatacatggtgtgtggacacgtgtcacgttttggaactagagaggtttcctgtgaacagcttgggtcaggtgtattattgtgagctggggtgatgatgggttaccagcagcttgttgcgtcaccgtggggactgataccgatggcctcgttgatagtggaagagtgacggtcggatttattgagttggggtgataatggttaccagcagcttttggtgtcaccgttgaccgacactatagatggccttatttatggaacagagtgacggcgagtcgagggttgcaagaacaaagcaacactgtcgatgaacttgacctggacttggttacacgtatttgaaagggttctcaattccagagactgataatttattggtgcttggtgttattatatatgaacagtattaccttattaccagtgaattgtttataaaccaccactaaatattaagattaataattatttattgattcttggtgaaatacaaatgtaaaatta
position 331
XR_005960071.1 - Gigantopelta aegis - NCBI
Fusarium graminearum PH-1 uncharacterized protein (FGSG_13090), partial mRNA. (411 bp)
Submission JOURNAL Submitted (08-NOV-2008) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA atgtctcatgatggattctgtgacagcatgcaggcaggacacgccgtactgtcgggttgcttcgcttcagccgcttcgctttcaggtctggtgaccgaacagcaaggtaatggctccatattcatgaccatcccacgaaacatcgttatcagtatctatatcggttgcaagaacaaatgggcagccttaaagacttggacgtgttgtcaagtcgatgagaaatggattcgggggtcgactgccaccaaatctcgccgccggccggttgggactggtccccagctggaaggataccgtaccaagacctggacccagaccatgaacccggacctggacctgggctcgaggctaataccggaagcgtgcgttcctggttgtaggtcaggtcggatcactcccgcgacgcgatga
position 164
XM_011328621.1 - Fusarium graminearum PH-1 (Gibberella zeae PH-1) - NCBI
PREDICTED: Gigantopelta aegis uncharacterized LOC121391207 (LOC121391207), ncRNA. (571 bp)
ggtgcacgggcagtgatacatggtgtgtggacacgtgtcacgttttggaactagagaggtttcctgtgaacagctggggtcaggtgtattattttgagctggggtgatgatgggttaccagcagtttgttgcgtcaccgtggggactgataccgatggcctcgttgatagtggaagagtgacggtcggatttattgagttggggtgataatggttaccagcagcttctggtgtcaccgttgaccgacactatagatggccttatttatggaacagagtgacggcgagtcgagggttgcaagaacaaagcaacactgtcgatgaacttgacctggacttggttacacgtatttgaaaggattctcaattccagagactgataattgcttggtgcctggtgttattatatatgaacagtattaccttatttccagtgaattgtttataaaccaccactaaatattaagattaataattatttattgattcttggtgaaatacaaatgtaaaatta
position 352
XR_005960355.1 - Gigantopelta aegis - NCBI
PREDICTED: Nicotiana attenuata uncharacterized LOC109211627 (LOC109211627), ncRNA. (425 bp)
with support for all annotated introns" /db_xref="GeneID:109211627" ncRNA 1..425 /ncRNA_class="lncRNA" /gene="LOC109211627" /product="uncharacterized LOC109211627" /db_xref="GeneID:109211627" ORIGIN // atcaaacctaaacttctaccccacccctcagccgccactctcctctccgttttattactcctttcttccacaatagcgttaatttaaagttgcaagaacaaagaggagtaagaggggtgctcaagaaagcaatgcctttgagaaatttcaatctcttctaatgccaaatatatagtgattacggagagtgcttcattattcttggatgcatgaagatcaagtgcgacgagggcggcgacatgaatcatcaagcaaatacttatgttcatttaatatgaaattttgtactttattttttatctctattacaatcaagcctcacattttctagttattttcttcaagttttagttaccgtagaagacttctctactgcatatgctattaatttattagta...
position 89
XR_002065752.1 - Nicotiana attenuata - NCBI
PREDICTED: Gigantopelta aegis uncharacterized LOC121380153 (LOC121380153), ncRNA. (576 bp)
ggttcacgggcagtgatacatggtgtgtggacacgtgtcacgttttggaactagagaggtttcctgtgaacagctggggtcaggtgtattattgtgagctggggtgatgatgggttaccagcagcttgttgcgtcaccgtggggactgataccgatggcctcgttgatagtggaagagtgacggtcggatttatagagttggggtgataatggttaccagcagcttctggtgtcaccgttgaccgacactatagatggccttatttatggaacagggtgacggcgagtcgagggttgcaagaacaaagcaacactgtcgatgaacttgacctggacttggttacatgtatttgaaaggggtctctattccagagactgataatttactggtgcttggtgcctggtgttattatatatgaacagtattaccttatttccagtgaattgtttataaaccaccactaaatattaagattaataattatttattgattcttggtgaaatacaaatgtaaaa
position 353
XR_005958888.1 - Gigantopelta aegis - NCBI
PREDICTED: Crassostrea virginica uncharacterized LOC111103037 (LOC111103037), transcript variant X2, mRNA. (461 bp)
taaaggaggaaatgatgtttagtggacagactcttgggtgtcgctcaatgaaacggagacttcttcagaaacatggcatctttatgggaagggatgacgtgctgtgtttattgagaataattgaccctgatggagttgatataagagcaagtcactgcttgacaagaagaatgtatctaaacaatggaccaaattacctggtacatgttgatgggtacgacaagttaaaaccatttggtttcgctatacatggtgcaatgtgtggattttcaagacgaatactatggcttaaagttgcaagaacaaacaatgacccttctgttgtagcatcatatttcttgaaatacctggaggaaataaatagtgctccaagagaatagaacgctggtggagaacactgagagag
position 349
XM_022436035.1 - Crassostrea virginica (eastern oyster) - NCBI
PREDICTED: Saccostrea echinata uncharacterized LOC133174943 (LOC133174943), mRNA. (428 bp)
ttcaggaagaaatgatgttcagtggacagactcttgggtgtcgttcgatgaaacgaagacttcttcagaaacatggcatctttataggaagggataacatgttgtgtttattgagaataatcgatcctgatggagttgatctaagagcaagtcactgcttgacaagaagaatgtatctaaacaatggaccaaattatcttgcacatgttgatgggtacgacaagttgaagccatttggcttcgctatacatggtgcaatgtgtggattttcaagacgaatactatggcttaaagttgcaagaacaaacaatgactcctttgttgtagcatcatatttcttgaaatacctggaggaaataaatagttga
position 354
XM_061310036.1 - Saccostrea echinata - NCBI
PREDICTED: Nicotiana attenuata uncharacterized LOC109224637 (LOC109224637), ncRNA. (436 bp)
with support for all annotated introns" /db_xref="GeneID:109224637" ncRNA 1..436 /ncRNA_class="lncRNA" /gene="LOC109224637" /product="uncharacterized LOC109224637" /db_xref="GeneID:109224637" ORIGIN // aacctaaacttctaccccattcctcagccgccactcttctctccgttttattactcctttcttccacaatagcgttaatttaaagttgcaagaacaaagaggagtaagaggggtgctcaagaaagcaatgcctttgagaaatttcaatctcttctaatgccaaatatatagtgattacggagagtgcttcattattcttggatgcatgaagatcaagcgcgacgagggtggcgacatgaatcatcaagcaaatacttatgttcatttaatatgaaattttgtactttattttttatctctattacaatcaagcctcacatttgctagttattttcttcaagttatagttattgtagaagacttctctactgcatatgctattaattcattagtactgg...
position 85
XR_002067745.1 - Nicotiana attenuata - NCBI
PREDICTED: Gigantopelta aegis uncharacterized LOC121380079 (LOC121380079), ncRNA. (591 bp)
ggtgcacgggcagtgatacatggtgtgtggacacgtgtcacgttttggaactagagaggtttcctgtgaacagctggggtcaggtgtattattgtgagctggggtgatgatgggttaccagcagcttgttgcgtcaccgtggggactgataccgatggcctcgttgatagtggaagagtgacggtcggatttattgagttggggtgataatggttaccagcagcttctggtgtcaccgttgaccgacactatagatggccttatttatggaacagagtgacggcgagtcgagggttgcaagaacaaagcaacactgtcgatgaacttgacctggacttggttacacgtatttgaaaggggtctctgttccagagactgataatttactggtgcttggtgcctgggtgttattatatatgaacagtattaccttatttccagtgaattgtttataaaccaccactaaatattaagattaataattatttattgattcttggtgaaatacaaatgtaaaatta
position 364
XR_005958877.1 - Gigantopelta aegis - NCBI
PREDICTED: Podarcis muralis uncharacterized LOC114595849 (LOC114595849), ncRNA. (516 bp)
ORIGIN // tgcatgaaaagagaatcggatagggatggcaattgtgcttaatcttgaattgttttgcaggtagatgaaagaagatattgggagacatttaatgaataggaaaattaatcaaagtatgaataaataaagacattgaaaaatgattatatgtaatcacatgttattatgcagagccacctgctgaaacaaagacaggagacagggccttttttgtaaaggcgaaagatttatacgatctgaggataagccaaagtttttatcggtggttgcaagaacaaacgagccctatattccaaacaaagtgcttgattaacctggagggccggcttgaatggaataagcctcagagatgtacacaaaagcaagaatgagtggaggatcaatagaagcaaatcaggaaggcagaaaagctgagatttttaaagaagatggaacatgcagacagccccagtggaccaggccaacaacccatctagtcctgttctcacagcagccaatggcagaacctgcctcaca
position 266
XR_003706364.1 - Podarcis muralis (Common wall lizard) - NCBI
PREDICTED: Hyla sarda hepcidin-like (LOC130293938), mRNA. (585 bp)
ccagcagggggtgctataaggtggagcagcgtcagatcccgacctcacctgctgatcactcatcgtctgatccagagagaagatgaagtccctcagcctctgcctcatcctcgtcctgtccctgaccgtccaccgggggctctgcgcctccgctagaaggcacaatgaggtagcagatcctgcagatcatctcgccagcccagacgtggtagagtcacatctagaggaggttttccatagaacaaagcgtttctcccacctttccatctgtcgcttctgctgcaattgttgcaagaacaaagagtgcggattatgttgcaagacctaagacccggagctccaccacagaatggagagacttgatctaagaacgcttgagattgagggccggtcaggagacaagatgtcttggggccccacagtggaagccccacagcccttcaccaggtggtgggggagggggtcttctttaattccgtatttctaagaatattcggagaaatgtccattgtcgctcatcgtgatgtaactgtatggagtctccagccctgtatttataagtgttgtcgatgtttttggtttata
position 288
XM_056543244.1 - Hyla sarda - NCBI
PREDICTED: Bombina bombina hepcidin-2 (LOC128638157), mRNA. (608 bp)
ORIGIN // tcaaattgtcacagttagcccagaagtcagaaactggacacacctgcaagatacataagagacaatgaaatctgcagttctctgctcacttgtgatcctcacaattatctgccatctaagcttctctgtctcagtgatggggaatgaaatgaaatatcctgcagaccaacttacaaaatctgagatggatgagtcaaatttgctgaccactcttctcagaaccaaacgtcagtcccacttgtctatctgtcggtactgctgtaactgttgcaagaacaaaggctgtggcctctgctgtcgcacataagtcaccagtacatagttataaacccttggtgccatcatctcaatgaagaatttataactgacacgtagcatcacagagctctggacacacaaactgcacagtccaaatccagtgacatggatgaagtgggactgtaataaaggaaaccaggactggattaattagtgcttaatacaatctgatctaagcaatctagtcacccagataaaaatggtttatctgtaaatactgaactttatttatttctcacacctacatgattttactgcttctgtctatttat...
position 267
XM_053690020.1 - Bombina bombina (fire-bellied toad) - NCBI
PREDICTED: Gigantopelta aegis uncharacterized LOC121377756 (LOC121377756), ncRNA. (604 bp)
ggtgcacgggcagtgatacatggtgtgtggacacgtgtcacgttttggaactagagaggtttcctgtgaacagctggggtcaggtgtattattgtgagctggggtgatgatgggttaccagcagcttgttgcgtcaccgtggggactgataccgatggcctcgttgatagtggaagagtgacggtcggatttattgagttggggtgataatggttaccagcagcttctggtgtcaccgttgaccgacactatagatggccttatttatggaacagggtgacggcgagtcgagggttgcaagaacaaagcaacactgtcgatgaacttgacctggacttggttacacgtatttgaaaggggtctctattccagagactgataatttactggtgcttggtgcctgggtgttattacatatgaacagtattaccttatttccagtgaattgtttataaaccaccactaaatattaagattaataattatttattgattcttggtgaaatacaaatgtaaaa
position 380
XR_005958653.1 - Gigantopelta aegis - NCBI
PREDICTED: Crassostrea virginica uncharacterized LOC111103037 (LOC111103037), transcript variant X1, mRNA. (487 bp)
taaaggaggaaatgatgtttagtggacagactcttgggtgtcgctcaatgaaacggagacttcttcagaaacatggcatctttatgggaagggatgacgtgctgtgtttattgagaataattgaccctgatggagttgatataagagcaagtcactgcttgacaagaagaatgtatctaaacaatggaccaaattacctggtacatgttgatgggtacgacaagttaaaaccatttggtttcgctatacatggtgcaatgtgtggattttcaagacgaatactatggcttaaagttgcaagaacaaacaatgacccttctgttgtagcatcatatttcttgaaatacctggaggaaataaataggtgctccaaggtgtgtgagaattgatgctggaactgagaatgtatacattgaggatattcaaaaatca
position 349
XM_022436034.1 - Crassostrea virginica (eastern oyster) - NCBI
PREDICTED: Gigantopelta aegis uncharacterized LOC121386498 (LOC121386498), ncRNA. (614 bp)
ggtgcacgggcagtgatacatggtgtgtggacacgtgtcacgttttggaactagagaggtttcctgtgaacagctggggtcaggtgtattattgtgagctggggtgatgatgggttaccagcagcttgttgcgtcaccgtggggactgataccgatggcctcgttgatagtggaagagtgacggtcggatttattgagttggggtgataatggttaccagcagcttctggtgtcaccgttgaccgacactatagatggccttatttatggaacagagtgacggcgagtcgagtgttgcaagaacaaagcaacactgtcgatgaacttgacctggacttggttacacgtatttgaaaggggtctctattccagagactgataatttactggtgcttggtgcctggtgttattatatatgaacagtattaccttatttccagtgaattgtttataaaccaccactaaatattaagattaataattatttattgattcttggtgaaatacaaatgtaaaa
position 391
XR_005959667.1 - Gigantopelta aegis - NCBI
PREDICTED: Anastrepha obliqua uncharacterized LOC129248022 (LOC129248022), mRNA. (621 bp)
ORIGIN // gcagtgaattttcactcattttctatttattaagttacaaaaattaacataagtggccgatttgtacttctatacttacctctttacataaatatacgccagacgtagtattggaaatggatgtaatcagcgaaatcaatgaaaaatattccgcattggaggcagaaatcgacaggaggttggacaaaatcaaaatggaagaaaagaaattggaaaagttgcaagaacaaagagcgagcaaaacatcagcacaaactactaaagttctctcgtatgaggagtcacttgcgagaaatacaaatttgcttaagtcattggagatagccaaagcgcggttacgttcacgttcgactttctcgccagttgagcaaatactggaaaaggcaatagcaaactataagagcgacctggaaacgtcacagcaattatcgtcacgtttcaagcaagtgcaaatttatgaagcgtcacctatgctaggcactgccagagaagatggagtacaactgaagtgagtgcaagtgatgcacacacacgcacatatccacacgcatttttaagtacttatttaagtaatgtatcaacttgtacgc...
position 218
XM_054887428.1 - Anastrepha obliqua - NCBI
PREDICTED: Solanum pennellii transcription factor VIP1-like (LOC114077646), mRNA. (543 bp)
ttgtgctcgaaaactccaactcaaaatgaactaattaataatgttcaaacattggaagaagcaatgaattctgaactcaagcatggtcaagtagatcctaacgtagattggaagaaaatgaaaagaatcatgtcaaatcgactatcagcacaaagatccaggaacaaaaagatagaatacacagctgaattggaaaagaaagtcaaagaattagagcatacaatagcttgggcgggatcagaaatagaaaatgctaaagataataaaaagaagttgatgctggagaacgaaatgttgcaagaacaaatggatattgtcactcacaaatctaattcaagcattgcacaaactgaagagttgaaagttgagttgaaaaggcttaaggaacttgcaaagagtcaaaagattgaaggacaaagttccaacttttgtgagtcagaagtagacatggatcagtatctcaactttgataccatgaacttttacccacaccaggattga
position 336
XM_027917980.1 - Solanum pennellii - NCBI
Rhizopus microsporus ATCC 52813 uncharacterized protein (RHIMIDRAFT_241997), partial mRNA. (543 bp)
gaaaatgtcgtctatcattttcaacctactcaaagattagacgcaatcaagtctgttatcattgatcgatgcaaacaaaagcaattgcccaaacagacatcaccacctatagaacatattggtggtttaccttccccacctgttgaagagaagaagccttttgttgaagaagaagaagaagaaacagaggaaagagaaaaagaatttaaaatgacctgtgatgaaattaaagccaagattcaaacattgaaagatgaaaagcatagactgtttcagctaattaaacaaatgatgttgcaagaacaaataaaaaagaaacaagaacaagagaaaatacaagaacaagagaaaatgcaagaacaagaagaaaagacgactcgatggggcccaccttcagagaggtcgaattatttttattcacgtccaagatataatcctcatccatatacgcaacatcgaccatctcgtcattataactcaaggtcctctccttattcttaa
position 336
XM_023609692.1 - Rhizopus microsporus ATCC 52813 - NCBI
PREDICTED: Hibiscus syriacus uncharacterized LOC120192904 (LOC120192904), mRNA. (592 bp)
atctcatacaacaagaagtcagtgacagaggcggtgccatactttgagcagttgggtcctctagtgaggcagatgatgccaatcgtagaagcatctcccttgtatgcaatggctaggagtgcttcagatgatgcgtggaagatgtttattggcatggctggatcaatgatacctgagagaccaagaagccctagtctcgttctccaaatttgtggatcaattgccttctgtttttgttcagttcacggaagggatatcagagttcaggccaacaccttctaagaaccgtgaatgttgcaagaacaaatacaacgtacaacacacactactggtgaagttcaactcggacacgattgatgaaactgatctcctcgaagagatattgaagcctcgtgtggacactatcggtgggacactcgaaaaggtgcaattaagt
position 450
XM_039195608.1 - Hibiscus syriacus - NCBI
PREDICTED: Oncorhynchus gorbuscha uncharacterized LOC124017895 (LOC124017895), transcript variant X2, mRNA. (568 bp)
ORIGIN // gtatccttccactgtcaggtgttgaaccacacgcatcaacttttgtatttgtgtaactatttctttcggacatgcctttcgttctcgtgttgccttcattatggaaaccttgacagcaacagccgtgcaagacatttgtcaatttatggaagaaacgtatgctgctcttcgagtggaaatgttgcaagaacaaaaccgaagttcgaggacaaaatttcaggcgatggagaatagcaaggggaaagaaaagcctgcgaacagtatggagagcgttcaagaagacggtttcagaaacttcccagtcgtggagcaaatcctcaatgaacaagaggccaatggtctttggctagaaggtcaccttactgtggaagatgcaggtccactgtcactggcaccagaggaagaacagccattgcagagttttggtcagatgacagacaagggagtggagacatgttcagcaccgctggtcattaaacaggaggaaacggatgatgtcatggagtctcaagtaccataaaggcctgattggtggagtgctgcagagatggttgtccttctggaaggt
position 181
XM_046333154.1 - Oncorhynchus gorbuscha (pink salmon) - NCBI
PREDICTED: Miniopterus natalensis uncharacterized LOC107544197 (LOC107544197), ncRNA. (675 bp)
aatattgtatacttggttgtgtatagaagctggtgagagtgccctcctacataagcaattgcagtgttttgcatgcagagttttaaaactttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatataattgagttcattttttccatgatgtaatacttttgacacagttgggtttcgcatattatcctagttcatgtacatcagaatgctaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctacagctaa
position 632
XR_001603884.1 - Miniopterus natalensis - NCBI
PREDICTED: Ceratotherium simum simum leucine zipper protein 6 (LOC106801840), mRNA. (708 bp)
tgtatcctcgattgtgtatagaagaagctggtgagagtgccctcctacataagcaattgcagtgtttttgcatgcaaaatttaaaaaatttaaattgtcctgattctattttgtaaatggaacaacaatcatatctttctaagcagtaatggaagaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtaatacttttgacacaattgggtttctcatattatcctagttcatgtacatcagaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctacag
position 669
XM_014787783.1 - Ceratotherium simum simum (southern white rhinoceros) - NCBI
PREDICTED: Propithecus coquereli leucine zipper protein 6 (LUZP6), mRNA. (700 bp)
ctcaattgtgtatagaagaagctggtgagagtgccctcctacataaataagcaattgcagtgttttgcatgcaaaatttaaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcatttttccataatgtcatatttttgacacaattgggtttctcataagtatcctagttcatgtacatcatccgaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 662
XM_012642752.1 - Propithecus coquereli (Coquerel's sifaka) - NCBI
PREDICTED: Bubalus bubalis leucine zipper protein 6 (LUZP6), mRNA. (718 bp)
tattgtatactcaattgtgtatagaagaagctggtgcgagtgccctcctacataagcaattgcagtgtttgcatgcaaaattttaaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaaggagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacagtgtaatacatttgacacagttggggttctcattatcctagttcatgtacatcagaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 680
XM_006041172.2 - Bubalus bubalis (water buffalo) - NCBI
PREDICTED: Equus przewalskii leucine zipper protein 6 (LUZP6), mRNA. (720 bp)
tgtatactcgattgtgtatagaagaagctggtgagagtgccctcctacataagcaattgcagtgtttttgcatgcaaaatttaaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcctatctttctaagcagtaatggaagaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtaatacttttgacacaattgagtttctcatattatcctggttcatgtacatcagaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctacagg
position 680
XM_008526274.1 - Equus przewalskii (Przewalski's horse) - NCBI
PREDICTED: Mandrillus leucophaeus leucine zipper protein 6 (LUZP6), mRNA. (734 bp)
tactcaattgtgtatagaagaagctggtgagagtgccctcctacataaataagcaattgcagtgttttgcatgcaaaatataaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtcatacttttgacacaattgggtttctcataagtatcctagttcatgtacatccgaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 696
XM_012000127.1 - Mandrillus leucophaeus (drill) - NCBI
PREDICTED: Pistacia vera LOB domain-containing protein 1-like (LOC116145384), mRNA. (659 bp)
aagatgctacgtcggagatgtgacaacaattgcatacttgcaccatattttccaatcgatgagatagaaaactttgcctgtgtgcatagagtttttggagctagcaatgtcattaaaatgattcagatggctgaggagacgaagagggaggatgctgtcaaagcaatagtttatgaagcaacagcaaggctcagagaccctgtttatggcagtgctgggactacttttcacttgcataagatggttcaggatctgaaatttgagttggaatcaatacaaagtcgagttatggcgttgcaagaacaaagaaatcagttattgggtattgtcatgaatgttcatcaccaggatcctgtctaccccataaatgactccatgtttgattgtggggatttctcattagatgatggatctctagcctatgatcctgttaacttttctatggagtgtgactggattttgtaaggagattctgattctcccc
position 469
XM_031430850.1 - Pistacia vera - NCBI
PREDICTED: Cercocebus atys leucine zipper protein 6 (LUZP6), mRNA. (755 bp)
tactcaattgtgtatagaagaagctggtgagagtgccctcctacataaataagcaattgcagtgttttgcatgcaaaatataaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtcatacttttgacacaattgggtttctcataagtatcctagttcatgtacatccgaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 717
XM_012068393.1 - Cercocebus atys (sooty mangabey) - NCBI
PREDICTED: Mandrillus leucophaeus leucine zipper protein 6-like (LOC105553934), mRNA. (755 bp)
tactcaattgtgtatagaagaagctggtgagagtgccctcctacataaataagcaattgcagtgttttgcatgcaaaatataaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtcatacttttgacacaattgggtttctcataagtatcctagttcatgtacatccgaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 717
XM_012000128.1 - Mandrillus leucophaeus (drill) - NCBI
PREDICTED: Colobus angolensis palliatus leucine zipper protein 6 (LUZP6), mRNA. (756 bp)
tactcaattgtgtatagaagaagctggtgagagtgccctcctacataaataagcaattgcagtgttttgcatgcaaaatataaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtcatacttttgacacaattgggtttctcataagtatcctagttcatgtacatccgaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 718
XM_011941552.1 - Colobus angolensis palliatus - NCBI
PREDICTED: Bubalus carabanensis uncharacterized LOC129622557 (LOC129622557), ncRNA. (756 bp)
aaggagagcatcccacttcctgaagccatccacccatcagttcaccagtccctctgttcatttgttctccatgctccaacacaggaaggaaggaagcactcctgtccaccagtgctgtggacgcacgacagcagagccctccacttcagccgctcaacagatgtttgaggaatgaagagatgactgagtatggatggtcctagtgagagagggatgataagttgcagaacaggggacaacatttgtcttgttgaagatttacaaggacatcaatgaccagatcaacctggacagttgcaagaacaaaggattccacccccaagacgtttgcaacaaccaaccacactccctcccctcttagtacaaaagaagcttgaattctgactcaggattggccttcttggaaattgctacagtggagtatattattttccccccaaaatcttcaaagctaaagatgtttcaagcagatgttatgattgctcttgtaataagaatctggataaaagatacacataaaatgattatttcttgtaagtaaaaattgtggttgaacata
position 491
XR_008700061.1 - Bubalus carabanensis (carabao) - NCBI
PREDICTED: Mangifera indica LOB domain-containing protein 1-like (LOC123224552), mRNA. (761 bp)
aagatgctacgtcggagatgtgacaacaattgcactcttgcaccatattttccaaccgatgagatagaaaagtttgcctgtgtgcacaaagtttttggcgctagcaatgtcattaaaatgattcagatggttgaggagataaagagagaagatgccgtcaaagcactagtttacgaagcaaaagcaaggcttagagaccctgtttatggcagtgccggggctacctctcacttgtataagatggttcaggatctgaaagttgagttggaatcaatgcaaactcaaattgtggcgttgcaagaacaaagaaatcagttattaagtattcttatgaatgttcatcaccaggatcctgtctactccataaatgactccacaattgactgtggcaatttctcagtagatgatggatctctggcctatgatcctgtcaactttcctgtggcatgtgacaggattttgtaaggggattctaattctctccagtattttatgaggtgaattaccagagttgttgctttaaaaaggtagagatgatttagtaagaaagtacccatggaagtatactggtttaatttgaagaaatgttctacagtagaa...
position 348
XM_044648277.1 - Mangifera indica (mango) - NCBI
PREDICTED: Vidua chalybeata uncharacterized LOC128794063 (LOC128794063), ncRNA. (787 bp)
aagcacttggactccatcttcaaagctggattgatggaaaacctgtaatgtcaacacctgggtaagtacagagagctagcaaaaaaaattcctagcagttctgaaacacttagcacaagaagatgtcatatgagctaaacaacaccctggtatcataactgcccagtgacactgctttcactgtgaatatgctctcacatcacctttagaaatgtgtcacctttattttcataaactttacatcaccttccagtttaacctcaggaaaggccactggtggtgctgatgattcagttgcaagaacaaaatagagatttcactgacctacatccgtcagccaaccatcctcaaggctatgttaccctctcataaaattggtgctgcatactcaccttccaatggaaaacaaagagctaccagcttcattagtcaatgttgctactgacaataaagtgtgctttgtgtactaagggtcggcactaaggacaagacaaacagaacaactactaaaaatgcctttcaaggctctttccctgtcactgtgaatgaaaactcttttgtctccaaggatactccacggtgggactgcacagcctgaat...
position 398
XR_008432974.1 - Vidua chalybeata - NCBI
PREDICTED: Musa acuminata subsp. malaccensis uncharacterized LOC103984015 (LOC103984015), ncRNA. (602 bp)
agtgaagtctcctatattccaagcgcacgacgaaaacaaaaagatgttcaccaaaggtcaggaggtcacagagaagcaatcaatagatcaccaacctttcttttagatacaaaggcacctgtcatggcaacacctatcttttagatacaagctattggctattacatgagctcattggaaagggatggcacaactaccttctcagtcagccaaccatgatcgatgcaaatttatgaatgaagatggatcgtagaaaatcatccaaacggtgttcagctacgacgcatacaaatgttgcaagaacaaaatggcattggaatcggattgaatggtcaaacatgaaaactcacgagttcgcacagccttccaagtcaaaccctttaattgctgttagtgtgcacgattcccagtaacttgttgcgctgaaactacaaagagttgacctcaatgtcgagcataaaactaaaactgga
position 423
XR_671615.2 - Musa acuminata subsp. malaccensis (wild Malaysian banana) - NCBI
PREDICTED: Merops nubicus secreted frizzled-related protein 4 (SFRP4), partial mRNA. (606 bp)
aagaactacagctacatcattcacgctaaagtgaaaaacgtagaaaaagggaattgccaggaaatcacaactgtggtcgaagtcaaagacatccttaagtcttcaacacccattcctctgtctcaagtgcctcttctgaccaattcctcctgccagtgtccacctcttcagccgaagcaggacgtcctcatcatgtgctacgagtggcgctcgaggttgatgcttctggatggatgcctggttgaaaaatggaaggatcagctaaacaaaagatttaagaggtgggaacagaggttgcaagaacaaaagctgcgaacagcccgcagcaagaaccagaacgcaggacacagtggtcggagtggagccccaaaaccatccaccaagaacatcaacccactgctcagcggccccaaaaaagccatgaaaccaagaagtggccagaaagaaaccaaccccaaaaaagtatga
position 432
XM_008939167.1 - Merops nubicus (carmine bee-eater) - NCBI
PREDICTED: Oryx dammah leucine zipper protein 6 (LUZP6), mRNA. (714 bp)
tgtatactcgattgtgtatagaagaagctggtgagagtgccctcctacataagcaattgcagtgtttgcatgcaaaattttaaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacagtgtaatacatttgacacagttgggtttctcttattatcctagttcatgtacatcagaatgctaaataatactgtgttttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 676
XM_040259896.1 - Oryx dammah (scimitar-horned oryx) - NCBI
PREDICTED: Nomascus leucogenys leucine zipper protein 6 (LUZP6), mRNA. (704 bp)
actcaattgtgtatagaagaagctggtgagagtgccctcctacataaataagcaattgcagtgttttgcatgcaaaatataaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtcatacttttgacgcaattgggtttctcataagtatcctagttcatgtacatccgaatgctaaataatactgtgttttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 666
XM_003261188.4 - Nomascus leucogenys (northern white-cheeked gibbon) - NCBI
PREDICTED: Leptonychotes weddellii leucine zipper protein 6 (LUZP6), mRNA. (709 bp)
ttgtgtactcgattgtgtatagaagaagctggtgagagtgccctcctatataagcaattgcagtgttttgcatgcaaaattttaagaatttaaatcatcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccatcatgtaatacttttgacgcaattgggtttctcatatgatcctagttcatgtacatccgaatgctaaataataccgtgtttcagttttgtgttgcaagaacaaatggaataaacttgaattgtgctacaa
position 670
XM_031029252.1 - Leptonychotes weddellii (Weddell seal) - NCBI
PREDICTED: Trachypithecus francoisi uncharacterized LOC117083189 (LOC117083189), ncRNA. (713 bp)
product="uncharacterized LOC117083189" /db_xref="GeneID:117083189" ORIGIN // agccatcctttcacgtttctgtcttagcaccaccagcactctgccactcactttttcttctctcctctgagcaagcgagctgcatgagtggagatgggttggaggaacctcttttcccaccctttcccaccagactaattgctttcaggaacctttggacctaatcgccagagctaaggagaaatgcttgactgcaagcaaaacaatgtgaaggttgcaagaacaaatttagtgttcgaaccaaatgagaacataagattgtgaggggcagatatgtaagacactgcaccaatgcctggatgtagcctcatggcctaagatggaaagttctcaattgccaactcctgtctgagtttgctctgccctggaatacctggcttgtattttcctcttattataaactttgatttatttatgaaaaagttttaaatgatctgatgccccacaaaatgttcaagttcatctatagattgtttcttgaagaagaaaacactaaatatgtgacttaaaatagtcagcagta...
position 214
XR_004436991.1 - Trachypithecus francoisi (Francois's langur) - NCBI
PREDICTED: Cervus elaphus leucine zipper protein 6 (LUZP6), mRNA. (800 bp)
ttgtgtactcgattgtgtatagaagaagctggtgagagtgccctcctacataagcaattgcagtgtttgcatgcaaaattttaaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtaatacatttgacacagttgggtttctcatattatcctagttcatgtacatcagaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
position 762
XM_043871798.1 - Cervus elaphus (red deer) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/seq%3aGUUGCAAGAACAAA
lang : en | div : | spe : | query_string : seq:GUUGCAAGAACAAA | format : html | download : 

0.000 | 0.000 | search_start;
0.076 | 0.076 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTTGCAAGAACAAA)?to=0&format=json
0.155 | 0.079 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GTTGCAAGAACAAA)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.159 | 0.004 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]