2024-05-20 03:34:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008939167 606 bp mRNA linear VRT 02-SEP-2014 DEFINITION PREDICTED: Merops nubicus secreted frizzled-related protein 4 (SFRP4), partial mRNA. ACCESSION XM_008939167 VERSION XM_008939167.1 DBLINK BioProject: PRJNA253837 KEYWORDS RefSeq; includes ab initio. SOURCE Merops nubicus (carmine bee-eater) ORGANISM Merops nubicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Meropidae; Merops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_008604885.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Merops nubicus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..606 /organism="Merops nubicus" /mol_type="mRNA" /isolate="BGI_N331" /db_xref="taxon:57421" /chromosome="Unknown" /sex="female" gene <1..606 /gene="SFRP4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:103771850" CDS <1..606 /gene="SFRP4" /codon_start=1 /product="secreted frizzled-related protein 4" /protein_id="XP_008937415.1" /db_xref="GeneID:103771850" /translation="
FADAKWSDFTQGMVVPDRPPEPDCKSRGQERCRCKKTKPTLSTYLAKNYSYIIHAKVKNVEKGNCQEITTVVEVKDILKSSTPIPLSQVPLLTNSSCQCPPLQPKQDVLIMCYEWRSRLMLLDGCLVEKWKDQLNKRFKRWEQRLQEQKLRTARSKNQNAGHSGRSGAPKPSTKNINPLLSGPKKAMKPRSGQKETNPKKV"
misc_feature 124..447 /gene="SFRP4" /note="NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the...; Region: NTR_like; cl02512" /db_xref="CDD:445808" ORIGIN
tttgcagatgcgaagtggtcggacttcacgcaggggatggtggtgccggacagacccccagagcccgactgcaagagccgcggccaggagcgatgcaggtgcaagaagacaaagccaacgctctcgacttacctggccaagaactacagctacatcattcacgctaaagtgaaaaacgtagaaaaagggaattgccaggaaatcacaactgtggtcgaagtcaaagacatccttaagtcttcaacacccattcctctgtctcaagtgcctcttctgaccaattcctcctgccagtgtccacctcttcagccgaagcaggacgtcctcatcatgtgctacgagtggcgctcgaggttgatgcttctggatggatgcctggttgaaaaatggaaggatcagctaaacaaaagatttaagaggtgggaacagaggttgcaagaacaaaagctgcgaacagcccgcagcaagaaccagaacgcaggacacagtggtcggagtggagccccaaaaccatccaccaagaacatcaacccactgctcagcggccccaaaaaagccatgaaaccaagaagtggccagaaagaaaccaaccccaaaaaagtatga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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