GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-20 05:00:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_043871798             800 bp    mRNA    linear   MAM 27-SEP-2021
DEFINITION  PREDICTED: Cervus elaphus leucine zipper protein 6 (LUZP6), mRNA.
ACCESSION   XM_043871798
VERSION     XM_043871798.1
DBLINK      BioProject: PRJNA764704
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Cervus elaphus (red deer)
  ORGANISM  Cervus elaphus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Cervidae; Cervinae; Cervus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_057832.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Cervus elaphus Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 27% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Cervus elaphus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9860"
                     /chromosome="18"
     gene            1..800
                     /gene="LUZP6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 23 ESTs, 1 Protein, and
                     83% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:122673881"
     CDS             1..432
                     /gene="LUZP6"
                     /codon_start=1
                     /product="leucine zipper protein 6"
                     /protein_id="XP_043727733.1"
                     /db_xref="GeneID:122673881"
                     /translation="
MRARLRRGGAHSSAAGRLDFGFPLPLHMDFMLIRVGLEFCIKSVFSDALFQVKTGGLPVYISILTDSPLQLPTGVLRLTVQLRHRNRPSSSLHSSPSKPSGARRRSRWMPWVEAVSKQALHSLISFPQIMDFKSICTYLIFFP"
     polyA_site      800
                     /gene="LUZP6"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
atgagagctcggttaaggcgagggggcgcacactcctccgctgctggacggctggactttgggtttcctctcccccttcacatggatttcatgcttattcgagttggattagaattttgtattaagtcagtcttttcagatgcactatttcaagtgaaaacaggtggtttacctgtctacattagtatcctaacagattcccccttgcagcttccgactggtgtcttgagacttacagttcagctccggcaccggaatcgacccagtagttctctgcacagctcaccttctaaacccagtggggcacgaaggagaagtaggtggatgccatgggtggaagctgtcagcaagcaggcccttcattcattgatttccttcccccaaataatggatttcaaatctatatgtacttatttgatttttttcccctaaaacttcaactaagctgctgttttcttccatgcaatattgtgtactcgattgtgtatagaagaagctggtgagagtgccctcctacataagcaattgcagtgtttgcatgcaaaattttaaaaaatttaaattgtcctgattctattttgtaaatggagaaacaatcatatctttctaagcagtaatggaggaagactagtgctttgtgcattttgatatatttgagttcattttttccacaatgtaatacatttgacacagttgggtttctcatattatcctagttcatgtacatcagaatgctaaataatactgtgtttaagttttgtgttgcaagaacaaatggaataaacttgaattgtgctaca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]