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2024-04-29 23:50:07, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Lactuca sativa protein CLAVATA 3 (LOC122198043), mRNA. (611 bp)
includes similarity to: 2 Proteins" /db_xref="GeneID:122198043" CDS 38..337 /gene="LOC122198043" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_042758182.1" /db_xref="GeneID:122198043" /translation="MAFALKSLSLSFVLLLGLLLLLQLYDGLNGAETTLSSVAALKKASNRKLLVVNDSRAKEAVFMIQGKKEEEEGWELRAAPLGPDPLHHHGADPKKPRTP" polyA_site 611 /gene="LOC122198043" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 83
XM_042902248.2 - Lactuca sativa (garden lettuce) - NCBI
PREDICTED: Erigeron canadensis protein CLAVATA 3 (LOC122593738), mRNA. (318 bp)
feature by RNAseq alignments" /db_xref="GeneID:122593738" CDS 1..318 /gene="LOC122593738" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_043622150.1" /db_xref="GeneID:122593738" /translation="MAFAFKSLSFSFILLLCVLFLLQISWGIYGAEKTISCDPSMKVMGNRKLLVVNGLEAKQEVLKIDGKKSTRKEDQYYVGWELRAAPLGPDPLHHHGADPKKPRTP" ORIGIN //...
AA_position 89
XM_043766215.1 - Erigeron canadensis - NCBI
Suillus subalutaceus uncharacterized protein (DFJ58DRAFT_733590), partial mRNA. (366 bp)
W" gene 366 /locus_tag="DFJ58DRAFT_733590" /db_xref="GeneID:64680762" CDS 1..366 /locus_tag="DFJ58DRAFT_733590" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_041238337.1" /db_xref="GeneID:64680762" /db_xref="JGIDB:Suisu1_733590" /translation="MSITQLPCHISGCKQIFKNKSGLTKHLHTLHPDPLHHHRTFHQAAPPPPHFPSPEHHNFDDAPLPATADTLEHQGDANGFILEEGTYVQFGPLLRAFHPRLTGLKCDIDGNTIDQTTPPPP" ORIGIN // REFERENCE 1 (bases 1 to 366) AUTHORS Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L., Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H.,...
AA_position 32
XM_041386313.1 - Suillus subalutaceus - NCBI
PREDICTED: Hordeum vulgare subsp. vulgare protein FLORAL ORGAN NUMBER2 (LOC123446299), mRNA. (768 bp)
db_xref="GeneID:123446299" CDS 73..444 /gene="LOC123446299" /codon_start=1 /product="protein FLORAL ORGAN NUMBER2" /protein_id="XP_044978906.1" /db_xref="GeneID:123446299" /translation="MRNSSLMVRLKVALPSMATVRFLLCLLVAWCCAALVILVPPAHARVGLVGGFGGRDNPAAAGFLHVGSESKQQQQPRGGGGSRYAWWSPPAWNEELRSVPAGPDPLHHHGSPRRPEQEPEHLP" polyA_site 768 /gene="LOC123446299" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 103
XM_045122971.1 - Hordeum vulgare subsp. vulgare (domesticated barley) - NCBI
Solanum lycopersicum CLAVATA3/ESR (CLE)-related protein 9 (CLE9), mRNA. (363 bp)
upstream in-frame stop codon" CDS 52..324 /gene="CLE9" /gene_synonym="SlCLE9" /codon_start=1 /product="CLAVATA3/ESR (CLE)-related protein 9 precursor" /protein_id="NP_001359067.1" /db_xref="GeneID:115600545" /translation="MSLLSTNKYSYPCLMLMAMILCIFLFSMQAQSSDQYSHGKSAMLRDHFIHNRKITKNGKRISQDAGELREAPMSPDPLHHHGGLPRNIMP" sig_peptide 52..141 /gene="CLE9" /gene_synonym="SlCLE9" /inference="COORDINATES: ab initio prediction:SignalP:4.0" ORIGIN // REFERENCE 1 (bases 1 to 363) AUTHORS Rodriguez-Leal D, Xu C, Kwon CT, Soyars C, Demesa-Arevalo E, Man J, Liu L, Lemmon ZH, Jones DS, Van Eck J, Jackson DP,...
AA_position 75
Synonym: SlCLE9
NM_001372138.1 - Solanum lycopersicum (Lycopersicon esculentum) - NCBI
PREDICTED: Raphanus sativus protein CLAVATA 3-like (LOC130507565), transcript variant X2, mRNA. (501 bp)
includes similarity to: 4 Proteins" /db_xref="GeneID:130507565" CDS 104..355 /gene="LOC130507565" /codon_start=1 /product="protein CLAVATA 3-like isoform X2" /protein_id="XP_056858247.1" /db_xref="GeneID:130507565" /translation="MDSRTLVLVLLVCLIFLHDASDITHANANFHALPIRKMMVMEKENEWGGANGNEELRTVPSGPDPLHHHVNPPRQPRTDSHLP" ORIGIN //...
AA_position 63
XM_057002267.1 - Raphanus sativus (radish) - NCBI
PREDICTED: Medicago truncatula protein CLAVATA 3 (LOC112419039), mRNA. (663 bp)
support for all annotated introns" /db_xref="GeneID:112419039" CDS 192..494 /gene="LOC112419039" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_024631555.1" /db_xref="GeneID:112419039" /translation="MASKFIFSSVFLLVLFCLLFIKETSAGCNTAYACSYANGESLKMFQNRKMLSGLKVSLEGSSTKIKYGEKTVVGELRKVPTGPDPLHHHNIGNPIKPENP" misc_feature 488 /gene="LOC112419039" /note="Protein Kinases, catalytic domain; Region: PKc_like; cl21453" /db_xref="CDD:451246" ORIGIN //...
AA_position 83
XM_024775787.2 - Medicago truncatula (barrel medic) - NCBI
PREDICTED: Helianthus annuus protein CLAVATA 3-like (LOC118480319), mRNA. (534 bp)
support for all annotated introns" /db_xref="GeneID:118480319" CDS 52..357 /gene="LOC118480319" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_035830993.1" /db_xref="GeneID:118480319" /translation="MAFEPKSLSVSFLLLLCLFLVLQLSDGAEATTLYNGSILKDISNRKLLVVNGLEAKEAVLNMGGKSKKGWELRAAPLGPDPLHHHGADPQKPRTP" ORIGIN //...
AA_position 85
XM_035975100.1 - Helianthus annuus (common sunflower) - NCBI
PREDICTED: Panicum virgatum protein FLORAL ORGAN NUMBER2-like (LOC120685088), mRNA. (309 bp)
to: 1 Protein" /db_xref="GeneID:120685088" CDS 1..309 /gene="LOC120685088" /codon_start=1 /product="protein FLORAL ORGAN NUMBER2-like" /protein_id="XP_039822863.1" /db_xref="GeneID:120685088" /translation="MAPRSLLCLAAAACCCLALLVPPAQGRLGIGLPGGFGATTNRRTSEQQRGTAAKAASTAWSSSWTAAAAGRVRPELRSVPGGPDPLHHHGSPWRPELEPTTP" ORIGIN //...
AA_position 83
XM_039966929.1 - Panicum virgatum (switchgrass) - NCBI
PREDICTED: Punica granatum protein CLAVATA 3 (LOC116211479), mRNA. (751 bp)
with support for all annotated introns" /db_xref="GeneID:116211479" CDS 189..482 /gene="LOC116211479" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_031401742.1" /db_xref="GeneID:116211479" /translation="MASSAALMAVCLLLLGASTLSAPLTTVSIRKVLVAVEDPPLVSNAIGAVPGGIEKSEGGGEMVESELRRVPSGPDPLHHHGSAPKKPDNRKSLPQTP" ORIGIN //...
AA_position 74
XM_031545882.1 - Punica granatum (pomegranate) - NCBI
PREDICTED: Asparagus officinalis uncharacterized LOC109836153 (LOC109836153), mRNA. (337 bp)
for all annotated introns" /db_xref="GeneID:109836153" CDS 18..272 /gene="LOC109836153" /codon_start=1 /product="uncharacterized protein LOC109836153" /protein_id="XP_020259628.1" /db_xref="GeneID:109836153" /translation="MKRDSLLILCSIILFSSFCSNVDGRLGCGDNMLGCFYQEGARPENADIYGFNGNGDVARDLRMVPSGPDPLHHHGSPKKPRNGP" ORIGIN //...
AA_position 68
XM_020404039.1 - Asparagus officinalis (garden asparagus) - NCBI
PREDICTED: Panicum virgatum protein FLORAL ORGAN NUMBER2-like (LOC120645795), mRNA. (321 bp)
to: 1 Protein" /db_xref="GeneID:120645795" CDS 1..321 /gene="LOC120645795" /codon_start=1 /product="protein FLORAL ORGAN NUMBER2-like" /protein_id="XP_039778468.1" /db_xref="GeneID:120645795" /translation="MTLRFLLLCLAAAACCCLALLVPPAQGRIAIGLAAGGFGATNRRASSEQQRGTAAKAAASTAWSSSWTGRVRPELRSVPGGPDPLHHHGSPRRPELEPTAP" ORIGIN //...
AA_position 87
XM_039922534.1 - Panicum virgatum (switchgrass) - NCBI
PREDICTED: Camelina sativa protein CLAVATA 3-like (LOC104754073), mRNA. (279 bp)
genomic feature by RNAseq alignments" /db_xref="GeneID:104754073" CDS 1..279 /gene="LOC104754073" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_010474533.1" /db_xref="GeneID:104754073" /translation="MDSRSLVLLLLFCLLFLHDASDLTQAHDHALPTRKMMMMKKGSDWGGANGDKKEKQKGLGLHEELRTVPSGPDPLHHHVNPPRQPRNPSHLP" ORIGIN // atggattcgagaagtcttgtgctactgctactcttctgcctcttgttcctccatgatgcttctgatctcactcaagctcatgatcatgctcttcccacgcgcaagatgatgatgatgaagaaggggagtgactggggaggagcaaatggagacgagaagcggtttagggctacatgaagagcttagaaccgttccttcaggacctgaccctttgcaccatcatgtgaacccaccaagacagccaagaaacccctctcatctcccttga
AA_position 72
XM_010476231.1 - Camelina sativa (false flax) - NCBI
PREDICTED: Setaria viridis protein FLORAL ORGAN NUMBER2-like (LOC117866179), mRNA. (641 bp)
introns" /db_xref="GeneID:117866179" CDS 140..481 /gene="LOC117866179" /codon_start=1 /product="protein FLORAL ORGAN NUMBER2-like" /protein_id="XP_034606223.1" /db_xref="GeneID:117866179" /translation="MARFFLCLAAAACCCLLALLVHPVQGRPSTGLASGGSFGGRDHPLSGPHVVTAEELRGTTVKAKPSWSSSSWTAVAAAGGRVRPELRSVPGGPDPLHHHGSPWRPELEQPITP" ORIGIN //...
AA_position 93
XM_034750332.1 - Setaria viridis - NCBI
PREDICTED: Camelina sativa protein CLAVATA 3 (LOC104705127), mRNA. (285 bp)
evidence includes similarity to: 2 Proteins" /db_xref="GeneID:104705127" CDS 1..285 /gene="LOC104705127" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_010419413.1" /db_xref="GeneID:104705127" /translation="MDSRSLVLLLLFCLLFLHDASDLTQAHADVHALPTRKMMMMKKGSNWGGANGEKEEKVKGLGLHEELRTVPSGPDPLHHHVNPPRQPRNHSHLP" ORIGIN //...
AA_position 74
XM_010421111.1 - Camelina sativa (false flax) - NCBI
PREDICTED: Camelina sativa protein CLAVATA 3-like (LOC104789283), mRNA. (285 bp)
includes similarity to: 1 Protein" /db_xref="GeneID:104789283" CDS 1..285 /gene="LOC104789283" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_010513310.1" /db_xref="GeneID:104789283" /translation="MDSRSLVLLLLFCLLFLHDASDLTQAHADVHALPTRKMMMMKKGSERGGVNGEKEEKLKGLGPNEELRTVPSGPDPLHHHVNPPRQPRNHSHLP" ORIGIN //...
AA_position 74
XM_010515008.1 - Camelina sativa (false flax) - NCBI
PREDICTED: Arabidopsis lyrata subsp. lyrata protein CLAVATA 3 (LOC9315145), mRNA. (576 bp)
the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:9315145" CDS 125..406 /gene="LOC9315145" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_002880898.1" /db_xref="GeneID:9315145" /translation="MDSRSLVLLLLFCLLFLHDASDLTHANAHIHGLPSRKMMKMEREWVGANGEEEKAKKKGLGLHEELRTVPSGPDPLHHHVNPPRQPRNQSNIP" ORIGIN //...
AA_position 73
XM_002880852.2 - Arabidopsis lyrata subsp. lyrata - NCBI
PREDICTED: Lotus japonicus protein CLAVATA 3 (LOC130745802), mRNA. (315 bp)
similarity to: 3 Proteins" /db_xref="GeneID:130745802" CDS 1..315 /gene="LOC130745802" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_057454170.1" /db_xref="GeneID:130745802" /translation="MASKSIVTIVILLLLFMCLSLIMRDPSDCNAAYGCSAASTKKILNRKVLSVLKDKKTTLKARVLQGSPNSKYIAEKSLSWQLRKVPSGPDPLHHHGGSPKPETP" ORIGIN //...
AA_position 89
XM_057598187.1 - Lotus japonicus - NCBI
PREDICTED: Eutrema salsugineum protein CLAVATA 3 (LOC112089240), mRNA. (288 bp)
evidence includes similarity to: 3 Proteins" /db_xref="GeneID:112089240" CDS 1..288 /gene="LOC112089240" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_024016053.1" /db_xref="GeneID:112089240" /translation="MDSRSLVLLLLFCIMFLHDASDITHAHAHVHALPTRKMMMVMKKENKWGGANGYEEEKKKGLGLNEELRTVPSGPDPLHHHVNPPRQPRNQSRLP" ORIGIN //...
AA_position 75
XM_024160285.1 - Eutrema salsugineum - NCBI
PREDICTED: Vicia villosa protein CLAVATA 3-like (LOC131651040), mRNA. (321 bp)
similarity to: 2 Proteins" /db_xref="GeneID:131651040" CDS 1..321 /gene="LOC131651040" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_058776703.1" /db_xref="GeneID:131651040" /translation="MASKFIPASVFLLVLFFLLLMRETSGCNSACACFDANGGGLKLSHNRKMLSSLKVKKAMLKVSVEGSSARMKKSEKEVIGEMRKVPTGPDPLHHHSIGNPIKPQTP" ORIGIN //...
AA_position 89
XM_058920720.1 - Vicia villosa (hairy vetch) - NCBI
PREDICTED: Capsella rubella protein CLAVATA 3 (LOC111831232), mRNA. (311 bp)
with support for all annotated introns" /db_xref="GeneID:111831232" CDS 21..311 /gene="LOC111831232" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_023640973.1" /db_xref="GeneID:111831232" /translation="MDSSRSLVLLLLFCLLFLHDASDLTQAHGHVTSLPTRKMMMMNKGSETVGANEEKEEKKIKGLGLNEELRTVPSGPDPLHHHVNPPRQPRNHSLLP" ORIGIN //...
AA_position 76
XM_023785205.1 - Capsella rubella - NCBI
PREDICTED: Nicotiana tomentosiformis uncharacterized LOC104116439 (LOC104116439), mRNA. (821 bp)
db_xref="GeneID:104116439" CDS 253..600 /gene="LOC104116439" /codon_start=1 /product="uncharacterized protein LOC104116439" /protein_id="XP_009625587.1" /db_xref="GeneID:104116439" /translation="MAFTNKHYLISLMILMVALQVQYICSDCLLLSGHSHGKTATQHSRKVLYMLKEKETEPITVTGSEITKQGHGYGETISTRNNGKNNKLELGVELREAPASPDPLHHHGNKPGIMP" ORIGIN //...
AA_position 101
XM_009627292.2 - Nicotiana tomentosiformis - NCBI
PREDICTED: Brassica rapa protein CLAVATA 3 (LOC103864769), mRNA. (544 bp)
annotated introns" /db_xref="GeneID:103864769" CDS 1..366 /gene="LOC103864769" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_009140784.2" /db_xref="GeneID:103864769" /translation="MIAPLLLSHYQSKEQLLSFIYSISLYKMDSRTLVLLLLFCLMFLHDASDITHANANVHALPIRKMMVMKKDNEWGGANGIEEEKEKVFGLNEELRTVPSGPDPLHHHVNPPRKPRTDSHIP" ORIGIN //...
AA_position 101
XM_009142536.3 - Brassica rapa (field mustard) - NCBI
PREDICTED: Raphanus sativus protein CLAVATA 3-like (LOC130507565), transcript variant X1, mRNA. (579 bp)
to: 1 Protein" /db_xref="GeneID:130507565" CDS 104..433 /gene="LOC130507565" /codon_start=1 /product="protein CLAVATA 3-like isoform X1" /protein_id="XP_056858246.1" /db_xref="GeneID:130507565" /translation="MDSRTLVLVLLVCLIFLHDASGLFPFLSLLYICRSCSHILTITMFSTDITHANANFHALPIRKMMVMEKENEWGGANGNEELRTVPSGPDPLHHHVNPPRQPRTDSHLP" ORIGIN //...
AA_position 89
XM_057002266.1 - Raphanus sativus (radish) - NCBI
PREDICTED: Panicum hallii protein FLORAL ORGAN NUMBER2-like (LOC112872312), mRNA. (397 bp)
annotated introns" /db_xref="GeneID:112872312" CDS 89..397 /gene="LOC112872312" /codon_start=1 /product="protein FLORAL ORGAN NUMBER2-like" /protein_id="XP_025791201.1" /db_xref="GeneID:112872312" /translation="MARFFLCLAAAACCLVLLVPPVHGRLGIGRAGGLGAANRHTAAEEQQRGTAVKAASSAWSTSWTAAAASGRVRPELRSVPGGPDPLHHHGSPWRPELEPTTP" ORIGIN //...
AA_position 83
XM_025935416.1 - Panicum hallii - NCBI
PREDICTED: Nicotiana tabacum uncharacterized LOC107801497 (LOC107801497), transcript variant X1, mRNA. (741 bp)
db_xref="GeneID:107801497" CDS 252..599 /gene="LOC107801497" /codon_start=1 /product="uncharacterized protein LOC107801497" /protein_id="XP_016480314.1" /db_xref="GeneID:107801497" /translation="MAFTNKQYLISLMILMVALQVQYICSDCLLLSGHSHGKTATQHSRKLLYMLKEKETEPITVTGSEITKQGHGYGKTISTGNNGKNNKLELGVELREAPASPDPLHHHGNKPGIMP" ORIGIN //...
AA_position 101
XM_016624828.1 - Nicotiana tabacum (common tobacco) - NCBI
Arabidopsis thaliana CLAVATA3 (CLV3), mRNA. (616 bp)
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="CLAVATA3" /protein_id="NP_973541.1" /db_xref="Araport:AT2G27250" /db_xref="GeneID:817267" /db_xref="TAIR:AT2G27250" /translation="MDSYKSQHNFFLLFTISPDLTQAHAHVQGLSNRKMMMMKMESEWVGANGEAEKAKTKGLGLHEELRTVPSGPDPLHHHVNPPRQPRNNFQLP" ORIGIN // REFERENCE 1 (bases 1 to 616) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S.,...
AA_position 72
Synonym: AtCLV3; CLAVATA3; F12K2.17; F12K2_17
NM_201812.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Arabidopsis thaliana CLAVATA3 (CLV3), mRNA. (783 bp)
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink)." /codon_start=1 /product="CLAVATA3" /protein_id="NP_565641.2" /db_xref="Araport:AT2G27250" /db_xref="GeneID:817267" /db_xref="TAIR:AT2G27250" /translation="MSGPVQQLFHCFSCHEKYLYILLWCAKHSKMLFNWQMMMMKMESEWVGANGEAEKAKTKGLGLHEELRTVPSGPDPLHHHVNPPRQPRNNFQLP" ORIGIN // REFERENCE 1 (bases 1 to 783) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S...
AA_position 74
Synonym: AtCLV3; CLAVATA3; F12K2.17; F12K2_17
NM_128283.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
PREDICTED: Brassica napus protein CLAVATA 3-like (LOC106424295), mRNA. (1077 bp)
with support for all annotated introns" /db_xref="GeneID:106424295" CDS 535..819 /gene="LOC106424295" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_013720496.1" /db_xref="GeneID:106424295" /translation="MDSRTLVLLLLFCLMFLHGASDITHANANVHALPIRKMMVMKKDNEWGGANRIEEEKEKVFGLNEELRTVPSGPDPLHHHVNPPRKPRTDSHIP" ORIGIN //...
AA_position 74
XM_013865042.3 - Brassica napus (rape) - NCBI
PREDICTED: Brassica napus protein CLAVATA 3 (LOC106449970), mRNA. (2833 bp)
with support for all annotated introns" /db_xref="GeneID:106449970" CDS 57..341 /gene="LOC106449970" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_048633746.1" /db_xref="GeneID:106449970" /translation="MDSRTLVLLLLFCLMFLHDASDITHANANVHALPIRKMMVMKKDNEWGGANGIEEEKEKVFGLNEELRTVPSGPDPLHHHVNPPRKPRTDSHIP" ORIGIN //...
AA_position 74
XM_048777789.1 - Brassica napus (rape) - NCBI
PREDICTED: Brassica oleracea var. oleracea protein CLAVATA 3 (LOC106341577), mRNA. (317 bp)
with support for all annotated introns" /db_xref="GeneID:106341577" CDS 33..317 /gene="LOC106341577" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_013635765.1" /db_xref="GeneID:106341577" /translation="MDSRTLVLLLLFCLMFLHGASDITHANANVHALPIRKMMVMKKDNEWGGANRIEEEKEKVFGLNEELRTVPSGPDPLHHHVNPPRKPRTDSHIP" ORIGIN //...
AA_position 74
XM_013780311.1 - Brassica oleracea var. oleracea - NCBI
PREDICTED: Coffea eugenioides protein CLAVATA 3 (LOC113772799), mRNA. (330 bp)
similarity to: 2 Proteins" /db_xref="GeneID:113772799" CDS 1..330 /gene="LOC113772799" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_027173082.1" /db_xref="GeneID:113772799" /translation="MAFLSIVSKSAVMLFITALCFLFVMQLQASDCKMGSGCFYVKATLHEVHSRKLLEGMKGNEMVFKSGMAGSASGGKGMKVGAGWELREAPMGPDPLHHHGGGPKNAKTP" ORIGIN //...
AA_position 93
XM_027317281.1 - Coffea eugenioides - NCBI
Arabidopsis thaliana CLAVATA3 (CLV3), mRNA. (552 bp)
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink)." /codon_start=1 /product="CLAVATA3" /protein_id="NP_001118398.1" /db_xref="Araport:AT2G27250" /db_xref="GeneID:817267" /db_xref="TAIR:AT2G27250" /translation="MDSKSFLLLLLLFCFLFLHDASDLTQAHAHVQGLSNRKMMMMKMESEWVGANGEAEKAKTKGLGLHEELRTVPSGPDPLHHHVNPPRQPRNNFQLP" ORIGIN // REFERENCE 1 (bases 1 to 552) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van...
AA_position 76
Synonym: AtCLV3; CLAVATA3; F12K2.17; F12K2_17
NM_001124926.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
PREDICTED: Lycium ferocissimum uncharacterized LOC132054669 (LOC132054669), mRNA. (534 bp)
xref="GeneID:132054669" CDS 40..408 /gene="LOC132054669" /codon_start=1 /product="uncharacterized protein LOC132054669" /protein_id="XP_059302627.1" /db_xref="GeneID:132054669" /translation="MAPFTNKQYPYLIIMVVLCIFLFPMMQAQSYDSVYYICGSAHGKATMQYLIQNRKLLLKEKETVTIIVPGTGSNEGHGHAKIVSSWNGKNKSGEYVELREAPMGPDPLHHHGGSPRNKPALP" ORIGIN //...
AA_position 105
XM_059446644.1 - Lycium ferocissimum - NCBI
PREDICTED: Coffea arabica protein CLAVATA 3-like (LOC113696569), mRNA. (469 bp)
annotated introns" /db_xref="GeneID:113696569" CDS 53..391 /gene="LOC113696569" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_027071771.1" /db_xref="GeneID:113696569" /translation="MAFLSIVSKSAVMLFITALCFLFVMQLQASALADCKMGSGCFYVKATLHEVHSRKLLEGMKGNEMVFKSGMAGSASGGKGMKVGAGWELREAPMGPDPLHHHGGGPKNAKTP" ORIGIN //...
AA_position 96
XM_027215970.1 - Coffea arabica (coffee) - NCBI
PREDICTED: Trifolium pratense protein CLAVATA 3 (LOC123894433), mRNA. (308 bp)
genomic feature by RNAseq alignments" /db_xref="GeneID:123894433" CDS 9..308 /gene="LOC123894433" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_045800394.1" /db_xref="GeneID:123894433" /translation="MASKFIFSSFFILVLFCLLLMRETSGCNSTYACSYANGGSLRMIQNRKMLSGLKVSLEGSSTKMKYGEKAVIGELRKVPSGPDPLHHHNIGNPIKPETP" ORIGIN //...
AA_position 82
XM_045944438.1 - Trifolium pratense - NCBI
PREDICTED: Coffea arabica uncharacterized LOC113731465 (LOC113731465), mRNA. (731 bp)
db_xref="GeneID:113731465" CDS 169..510 /gene="LOC113731465" /codon_start=1 /product="uncharacterized protein LOC113731465" /protein_id="XP_027112594.1" /db_xref="GeneID:113731465" /translation="MAFLSIVSKSAVMLFITALCCLFVMQLQASALADCKMGSGCFYVKATLHEVHSRKLLEGMKGHEMVFKSGGMAGSASGGKGMKVGAGWELREAPMGPDPLHHHGGGPKNAKTP" ORIGIN //...
AA_position 97
XM_027256793.1 - Coffea arabica (coffee) - NCBI
PREDICTED: Setaria italica protein FLORAL ORGAN NUMBER2-like (LOC101764297), mRNA. (342 bp)
Protein" /db_xref="GeneID:101764297" CDS 1..342 /gene="LOC101764297" /codon_start=1 /product="protein FLORAL ORGAN NUMBER2-like" /protein_id="XP_004980685.1" /db_xref="GeneID:101764297" /translation="MARFFLCLAAAACCCLLALLVPPVHGRPGTGLASGGSFGGRDHPLSGPHVVTAEELRGTTVKAKPSWSSSSWTAAAAVGGRVRPELRSVPGGPDPLHHHGSPWRPELEQPITP" ORIGIN //...
AA_position 93
XM_004980628.1 - Setaria italica (foxtail millet) - NCBI
PREDICTED: Sorghum bicolor protein FLORAL ORGAN NUMBER2-like (LOC110435999), mRNA. (713 bp)
db_xref="GeneID:110435999" CDS 1..360 /gene="LOC110435999" /codon_start=1 /product="protein FLORAL ORGAN NUMBER2-like" /protein_id="XP_021317809.1" /db_xref="GeneID:110435999" /translation="MARIFLCLLAAAYCCIALLPPPAQARRHGLQQQQAAGAGGRRRLHLSPQVPEPRFFVPKQAAAAERRGEPVSMKARPRAAAAWSVRPELRAVPGGPDPLHHHGGSPSRRPEQDRTPRSP" ORIGIN //...
AA_position 96
XM_021462134.1 - Sorghum bicolor (sorghum) - NCBI
PREDICTED: Pisum sativum protein CLAVATA 3-like (LOC127086676), mRNA. (535 bp)
similarity to: 2 Proteins" /db_xref="GeneID:127086676" CDS 8..328 /gene="LOC127086676" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_050883427.1" /db_xref="GeneID:127086676" /translation="MASKLIPTSVFLLVLFFLLLMRESSGLNSSYACFDANGGTLKLSHNRKMLSSLEVKKAMLKVNVEGPSTRMKKSEKEVIGELRKVPTGPDPLHHHSIGNPIKPETP" polyA_site 535 /gene="LOC127086676" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 89
XM_051027470.1 - Pisum sativum (garden pea) - NCBI
PREDICTED: Coffea arabica uncharacterized LOC113741807 (LOC113741807), mRNA. (552 bp)
db_xref="GeneID:113741807" CDS 169..552 /gene="LOC113741807" /codon_start=1 /product="uncharacterized protein LOC113741807" /protein_id="XP_027125250.1" /db_xref="GeneID:113741807" /translation="MAFLSIVSKSAVMLFITALCCLFVMQLQASALADCKMGSGCFYVKATLHEVHSRKLLEGMKGHEMVFKSGGMAGSASGGKGMKVGAGWELREAPMGPDPLHHHGGGPRTPRHHSAFVDPHPFETELS" ORIGIN //...
AA_position 97
XM_027269449.1 - Coffea arabica (coffee) - NCBI
PREDICTED: Rhododendron vialii uncharacterized LOC131314639 (LOC131314639), mRNA. (761 bp)
CDS 101..529 /gene="LOC131314639" /codon_start=1 /product="uncharacterized protein LOC131314639" /protein_id="XP_058199409.1" /db_xref="GeneID:131314639" /translation="MELKSGLSFWQQWNVRYFVFLSFFENLRGVSLSLWSIWGVLNRVRMGLWRAIAWFCLSMLVAFVVFSSPFLHSSTTPCFQGGRKLLNTQQGTALPQGFLSNNQGRRGGEIGGNLGNGAEESAREVPTGPDPLHHHDINPSGP" ORIGIN //...
AA_position 129
XM_058343426.1 - Rhododendron vialii - NCBI
PREDICTED: Fopius arisanus glycine-rich RNA-binding protein 3, mitochondrial-like (LOC105267100), mRNA. (812 bp)
with support for all annotated introns" /db_xref="GeneID:105267100" CDS 72..617 /gene="LOC105267100" /codon_start=1 /product="glycine-rich RNA-binding protein 3, mitochondrial-like" /protein_id="XP_011304033.1" /db_xref="GeneID:105267100" /translation="MAKLLAVVILLIVTCASAYPTIQSDEQDRDFKVRVARSPGPDPLHHHHHYGGYDGYGRYGEHGGYGGYGGYGGYGGYGGYGDNDGGYGSQRYNGYGNQRFNGYGNQGYNGYGNQGYNGYGNQGYNGYGNQGYGNQGYNRYPQSGNSQSAANANSGSFNTPFGSGSFASANANSRNDNGEIY" ORIGIN //...
AA_position 41
XM_011305731.1 - Fopius arisanus - NCBI
PREDICTED: Raphanus sativus uncharacterized LOC108853560 (LOC108853560), mRNA. (779 bp)
protein LOC108853560" /protein_id="XP_018482472.2" /db_xref="GeneID:108853560" /translation="MDDGEYALIFYMPELRYRLQGSDCYDQGFSRLAKLCHGAGEDRNVTDLLPGFQDSYVPRARNQISDFLSKTARSFHRELLFIATNKKKINDTPSSSLQPINNTPILLSHYHIKEQFLSFIHSISLYKMDSRTLVLVLLVCLIFLHDASDITHANANFHALPIRKMMVMEKENEWGGANGNEELRTVPSGPDPLHHHVNPPRQPRTDSHLP" ORIGIN //...
AA_position 190
XM_018626970.2 - Raphanus sativus (radish) - NCBI
PREDICTED: Thamnophis sirtalis metabotropic glutamate receptor 1-like (LOC106554659), partial mRNA. (1245 bp)
start=1 /product="metabotropic glutamate receptor 1-like" /protein_id="XP_013928853.1" /db_xref="GeneID:106554659" /translation="MLLTMCRQEDPMKLVTWIWMVSCNKMIGVLLVFFPAILLEMDFLPKNTGRKVLLSAATSQRSVARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPFLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSLISIRDEKDALGRCLPDPLHHHQIRAKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDILQARAMLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELAAQEGLCIAHSDKIYSNAGEKSFEKLLQKLRERLPKARVVVCFCEGMTVRGILMAMRRMGVFRELLLIG" misc_feature 401..>1245 /gene="LOC106554659" /note="Type 1 periplasmic binding fold superfamily; Region: Periplasmic_Binding_...
AA_position 167
XM_014073378.1 - Thamnophis sirtalis - NCBI
PREDICTED: Eriocheir sinensis homeobox protein ceh-10-like (LOC126981396), mRNA. (3465 bp)
MSSQRAQRGHSGRRQQAVEAEGLDSSDSMSKSFDGQNVSLGRRHSRTIFTSFQLEELEKAFKESHYPDVYAREMLSLKTDLPEDRIQVWFQNRRAKWRKTEKTWGKSTIMAEYGLYGAMVRHSLPLPETIVKSVDNGEECPAPWLLGMHRKSLEAAQTLQESEADGEASDGREEPQLHTSQQPQQHQPSSGEQQTEQQDQHGHPGEHAGDPESAFPRDSPHFPLEKDVGSSGFVGTRGEAGGGSLHGGGPSAAAAQNPIQDDLRSSSIAALRQKAQEHAARMSINNNLAGLHHPDPLHHHHHHHHHLGGHF" misc_feature order(145..159,163..165,214..216,232..234,271..273, 277..282,289..294,298..306,310..315) /gene="LOC126981396" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 151..312 /gene="LOC126981396" /note="Homeobox domain; Region: Homeobox;...
AA_position 331
XM_050832413.1 - Eriocheir sinensis (Chinese mitten crab) - NCBI
PREDICTED: Mus pahari osteomodulin (Omd), mRNA. (1858 bp)
WDEDYDQEPNEDYEPEFQFHQNIEYEVPFYHNILGCAKECFCPTNFPTSMYCDNRKLKTIPNIPMHIQQLNLQFNDIEAVTANSFINATHLKEINLSHNKIKSQKIDYGVFAKLSNLQQLHLEHNNLEEFPFPLPKSLERLLLGYNEISTLPTNAMDGLVNVTMLDLCYNHLSDSMLKEKTLSKMEKLMQLNLCNNRLESMPPGLPSSLMYLSLENNSISSIPDNYFDKLPKLHALRISHNKLEDIPYDIFNLSNLIELNVGHNKLKQAFYIPRNLEHLYLQNNEIESINVTMICPSPDPLHHHHLTYLRVDQNKLKEPISSYIFFCFPRIHSIYYGEQRSTNGETIQLKTQVFRSYQDDHDSQDNTLEGQEVSDEHFNSHYYEMQEWQDTI" misc_feature 1271 /gene="Omd" /note="type III secretion system effector E3 ubiquitin transferase SlrP; Region: PRK15370" /db_xref="CDD:185268" misc_feature 585..641 /gene="Omd" /note="leucine-rich repeat...
AA_position 324
XM_021216032.2 - Mus pahari (shrew mouse) - NCBI
PREDICTED: Portunus trituberculatus RYamide receptor-like (LOC123502169), mRNA. (1962 bp)
SIFVSAYTLVAISLDRYLAIIYPLRPRMTRCQAKVIIAAVWFMALVTTLPIAVFSRLDPTDLRVYQWYGREVCREDWPNEMLRKYYTMSLMILQYFLPLLVLIYTYSRIACKVWGCRSTRFSHSGCNTQMTLVAAPETARGLLRTNASDHSPAKMIRMTLAVVLVYSLCWLPFNILMVILDFVEEAGFWTHTHHVWFICHWLAMSHACYNPLILCWMNTKFREGYLLALYRLLPCCRSRLSHSLLQLRQSAGLQRAYTSSTRASRTQRYSAVYLECQVRENNGDLPPTVPIHHQLDLPDPLHHHHLHHLHHKPPPPQPPPPPHKPWESKL" misc_feature 678..1598 /gene="LOC123502169" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:452889" misc_feature 681..755 /gene="LOC123502169" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_...
AA_position 432
XM_045251396.1 - Portunus trituberculatus (swimming crab) - NCBI
PREDICTED: Portunus trituberculatus visual system homeobox 1-like (LOC123508227), mRNA. (1938 bp)
TMNSGMPPMLGLRPDAHAAHPDAHSPGLDSSDSTSKLFDGQNVSLGRRHSRTIFTSFQLEELEKAFKESHYPDVYAREMLSLKTDLPEDRIQVWFQNRRAKWRKTEKTWGKSTIMAEYGLYGAMVRHSLPLPDTIMKSVDNGEECPAPWLLGMHRKSMEAAQTLQESEADGEASDGREEPQLHKSQQPPQLQNSSGEPQTEQQEQNGHPGEHSGDPESVFLRDSSHFPMDKDVGGNSFVGSRAEGSGANFNGRGPSQASQSPIQDDLRSSSIAALRQKAQEHAARMSINNNLAGLHHPDPLHHHHHHHHHLGGHF" misc_feature order(767..781,785..787,836..838,854..856,893..895, 899..904,911..916,920..928,932..937) /gene="LOC123508227" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 773..934 /gene="LOC123508227" /note="Homeobox domain; Region: Homeobox;...
AA_position 463
XM_045261780.1 - Portunus trituberculatus (swimming crab) - NCBI
Malassezia globosa CBS 7966 uncharacterized protein (MGL_3241), partial mRNA. (1644 bp)
xref="taxon:425265" /chromosome="Unknown" gene 1644 /locus_tag="MGL_3241" /db_xref="GeneID:5854003" CDS 1..1644 /locus_tag="MGL_3241" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_001729697.1" /db_xref="GeneID:5854003" /translation="MRAALGVWAVLGCTSVGSIYALQQHSHALSEEVSAPTVSSEFPDPLHHHYHQYHHRHIRVYPHASSSVWRLRRLHQNANRDWWEPDNILAQGDSLLSSLVGGEFTTINKDSSAPGSSPTVHPNNHLLSSHEFTTINKNSRASPTDEASSSAASKVASQTSSSGDDEDKETSSQVPTKSSTSRSVASSTQTQEDSSTPGAVQSTSSTTMKRSSRSSSPTSSSLSSLSSSSLTGNGDNVERTSATPSASSQESLASSQESSVRSPSSRASSAPMPTTSDADDESAKAQPSSSSGTPGSQSPMDPSQHMSNADSDGHDHTGLIAGVSTAGGVVVAALLLFMLYWLWKSRK...
AA_position 43
XM_001729645.1 - Malassezia globosa CBS 7966 - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/aa%3aPDPLHHH
lang : en | div : | spe : | query_string : aa:PDPLHHH | format : html | download : 

0.000 | 0.000 | search_start;
0.075 | 0.075 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:PDPLHHH)?to=0&format=json
0.111 | 0.035 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:PDPLHHH)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.116 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]