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2024-05-16 14:33:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_045251396            1962 bp    mRNA    linear   INV 04-DEC-2021
DEFINITION  PREDICTED: Portunus trituberculatus RYamide receptor-like
            (LOC123502169), mRNA.
ACCESSION   XM_045251396
VERSION     XM_045251396.1
DBLINK      BioProject: PRJNA783019
KEYWORDS    RefSeq.
SOURCE      Portunus trituberculatus (swimming crab)
  ORGANISM  Portunus trituberculatus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda;
            Pleocyemata; Brachyura; Eubrachyura; Portunoidea; Portunidae;
            Portuninae; Portunus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_059264) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Portunus trituberculatus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Portunus trituberculatus"
                     /mol_type="mRNA"
                     /isolate="SZX2019"
                     /db_xref="taxon:210409"
                     /chromosome="10"
                     /tissue_type="muscle"
                     /country="Pacific Ocean"
                     /collection_date="2019-03-01"
     gene            1..1962
                     /gene="LOC123502169"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:123502169"
     CDS             522..1916
                     /gene="LOC123502169"
                     /codon_start=1
                     /product="RYamide receptor-like"
                     /protein_id="XP_045107331.1"
                     /db_xref="GeneID:123502169"
                     /translation="
MNPTSYPAATPTGHVFLEGYSICDHCNFTDTDLEVLLNSGTCTPSDFSSYMPLIYQMYACIFVIALLGNTLVLYTVAANRKMHTVTNLFIANLAVGDLLIMVFCVPFSVASIIVLQYWPFGEVLCVFVNYSQAVSIFVSAYTLVAISLDRYLAIIYPLRPRMTRCQAKVIIAAVWFMALVTTLPIAVFSRLDPTDLRVYQWYGREVCREDWPNEMLRKYYTMSLMILQYFLPLLVLIYTYSRIACKVWGCRSTRFSHSGCNTQMTLVAAPETARGLLRTNASDHSPAKMIRMTLAVVLVYSLCWLPFNILMVILDFVEEAGFWTHTHHVWFICHWLAMSHACYNPLILCWMNTKFREGYLLALYRLLPCCRSRLSHSLLQLRQSAGLQRAYTSSTRASRTQRYSAVYLECQVRENNGDLPPTVPIHHQLDLPDPLHHHHLHHLHHKPPPPQPPPPPHKPWESKL"
     misc_feature    678..1598
                     /gene="LOC123502169"
                     /note="seven-transmembrane G protein-coupled receptor
                     superfamily; Region: 7tm_GPCRs; cl28897"
                     /db_xref="CDD:452889"
     misc_feature    681..755
                     /gene="LOC123502169"
                     /note="TM helix 1 [structural motif]; Region: TM helix 1"
                     /db_xref="CDD:410628"
     misc_feature    780..848
                     /gene="LOC123502169"
                     /note="TM helix 2 [structural motif]; Region: TM helix 2"
                     /db_xref="CDD:410628"
     misc_feature    897..965
                     /gene="LOC123502169"
                     /note="TM helix 3 [structural motif]; Region: TM helix 3"
                     /db_xref="CDD:410628"
     misc_feature    1026..1076
                     /gene="LOC123502169"
                     /note="TM helix 4 [structural motif]; Region: TM helix 4"
                     /db_xref="CDD:410628"
     misc_feature    1173..1244
                     /gene="LOC123502169"
                     /note="TM helix 5 [structural motif]; Region: TM helix 5"
                     /db_xref="CDD:410628"
     misc_feature    1389..1457
                     /gene="LOC123502169"
                     /note="TM helix 6 [structural motif]; Region: TM helix 6"
                     /db_xref="CDD:410628"
     misc_feature    1500..1577
                     /gene="LOC123502169"
                     /note="TM helix 7 [structural motif]; Region: TM helix 7"
                     /db_xref="CDD:410628"
ORIGIN      
gagaagtaagaaagaaagaaggaaatagaggagacagttaataaatagagaaagaagaaaagaaagaaagaaagaaagaaagaaagaaactaagatagagaagaaagaaaaaaaataagacttaaatgtgaatgaagataattagataagaaaggaaggaaaaagaagaaagaaaacgagagaagaagaagaagaagaagaagaagaagaagaagaagaagagaaagaggaagaggaagaagtccactcacggatatggcatcaggaggaggagcagaaggagaaggaggcggaggaggaggaggagtggtagtggacgtggtggaggaaatccttcttcggtgccagcaggacatcctcaacgcctcgggaactcagacatcagaaacggctacctacagaatggaaacctgacaggaaccaacgcgagtcctgaggaacgccttatcactgacacccactactacactgacgaccccaggatatctcaaggaccaggtgcaccctatgaggatacctacatgaatcctacgtcatatcctgcagctacccctacaggacacgttttcctggaggggtatagcatatgcgaccactgcaacttcacggacactgatttggaagtccttctaaactccgggacatgtacaccttcagatttctcctcctacatgcctttaatctaccaaatgtacgcttgtatcttcgtaatagcgctcctaggcaacactttagtcctctacacagtggcggctaatagaaaaatgcacacagtcaccaatctcttcatagcaaacctggctgtgggtgacctgctgataatggtgttctgtgtcccgttcagtgtcgcgtccatcatcgtcctgcagtactggccgttcggggaggtgctgtgtgtcttcgttaattattcccaggccgtgtcaatcttcgtctcggcctacacactggtagccataagcttggaccgctacctggccattatctacccgctccggccacgcatgactcgctgccaggctaaggtgatcattgcggcagtctggttcatggctctcgtcaccacactacccatcgctgtcttctctcgcctcgaccccactgaccttcgcgtgtatcagtggtacggacgcgaggtatgtcgagaggattggcccaacgaaatgctaagaaaatactacacgatgagcttaatgatcctacagtactttctgcctctccttgtccttatatacacgtactcaaggatcgcatgcaaggtgtggggttgtcgatctacccgtttctctcactctggatgcaacactcagatgacgctcgtggcagcccctgagacagcccggggactactgaggactaacgccagcgaccactcccccgccaagatgatacgaatgaccctggctgttgtccttgtctactccctctgctggctgcccttcaatatcctcatggtgatactggacttcgtggaggaggcaggtttctggacacacacccatcacgtctggttcatctgtcactggctggccatgtcccacgcctgctacaaccctctcattctctgctggatgaatacaaagttccgagaaggctatctgctggctctctaccgcctcctgccctgttgccgctcccgcctctcccactccctcctccagctcaggcagtcagcgggattgcagagggcgtatacttcaagcaccagggcatctcgcacgcagaggtacagcgcagtttatttggagtgtcaggtgagagagaacaatggtgacctccctccaacggtaccaattcatcaccagcttgatctgccagacccacttcaccaccaccacctccaccacctccaccacaaaccaccaccaccacagccgccgccaccaccacacaaaccctgggagtcaaagttataggttgtggtgttgagttactattggtgttgttgttgttagtgttaga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]