2024-05-16 14:33:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_045251396 1962 bp mRNA linear INV 04-DEC-2021 DEFINITION PREDICTED: Portunus trituberculatus RYamide receptor-like (LOC123502169), mRNA. ACCESSION XM_045251396 VERSION XM_045251396.1 DBLINK BioProject: PRJNA783019 KEYWORDS RefSeq. SOURCE Portunus trituberculatus (swimming crab) ORGANISM Portunus trituberculatus Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Brachyura; Eubrachyura; Portunoidea; Portunidae; Portuninae; Portunus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_059264) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Portunus trituberculatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1962 /organism="Portunus trituberculatus" /mol_type="mRNA" /isolate="SZX2019" /db_xref="taxon:210409" /chromosome="10" /tissue_type="muscle" /country="Pacific Ocean" /collection_date="2019-03-01" gene 1..1962 /gene="LOC123502169" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns" /db_xref="GeneID:123502169" CDS 522..1916 /gene="LOC123502169" /codon_start=1 /product="RYamide receptor-like" /protein_id="XP_045107331.1" /db_xref="GeneID:123502169" /translation="
MNPTSYPAATPTGHVFLEGYSICDHCNFTDTDLEVLLNSGTCTPSDFSSYMPLIYQMYACIFVIALLGNTLVLYTVAANRKMHTVTNLFIANLAVGDLLIMVFCVPFSVASIIVLQYWPFGEVLCVFVNYSQAVSIFVSAYTLVAISLDRYLAIIYPLRPRMTRCQAKVIIAAVWFMALVTTLPIAVFSRLDPTDLRVYQWYGREVCREDWPNEMLRKYYTMSLMILQYFLPLLVLIYTYSRIACKVWGCRSTRFSHSGCNTQMTLVAAPETARGLLRTNASDHSPAKMIRMTLAVVLVYSLCWLPFNILMVILDFVEEAGFWTHTHHVWFICHWLAMSHACYNPLILCWMNTKFREGYLLALYRLLPCCRSRLSHSLLQLRQSAGLQRAYTSSTRASRTQRYSAVYLECQVRENNGDLPPTVPIHHQLDLPDPLHHHHLHHLHHKPPPPQPPPPPHKPWESKL"
misc_feature 678..1598 /gene="LOC123502169" /note="seven-transmembrane G protein-coupled receptor superfamily; Region: 7tm_GPCRs; cl28897" /db_xref="CDD:452889" misc_feature 681..755 /gene="LOC123502169" /note="TM helix 1 [structural motif]; Region: TM helix 1" /db_xref="CDD:410628" misc_feature 780..848 /gene="LOC123502169" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:410628" misc_feature 897..965 /gene="LOC123502169" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:410628" misc_feature 1026..1076 /gene="LOC123502169" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:410628" misc_feature 1173..1244 /gene="LOC123502169" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:410628" misc_feature 1389..1457 /gene="LOC123502169" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:410628" misc_feature 1500..1577 /gene="LOC123502169" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:410628" ORIGIN
gagaagtaagaaagaaagaaggaaatagaggagacagttaataaatagagaaagaagaaaagaaagaaagaaagaaagaaagaaagaaactaagatagagaagaaagaaaaaaaataagacttaaatgtgaatgaagataattagataagaaaggaaggaaaaagaagaaagaaaacgagagaagaagaagaagaagaagaagaagaagaagaagaagaagagaaagaggaagaggaagaagtccactcacggatatggcatcaggaggaggagcagaaggagaaggaggcggaggaggaggaggagtggtagtggacgtggtggaggaaatccttcttcggtgccagcaggacatcctcaacgcctcgggaactcagacatcagaaacggctacctacagaatggaaacctgacaggaaccaacgcgagtcctgaggaacgccttatcactgacacccactactacactgacgaccccaggatatctcaaggaccaggtgcaccctatgaggatacctacatgaatcctacgtcatatcctgcagctacccctacaggacacgttttcctggaggggtatagcatatgcgaccactgcaacttcacggacactgatttggaagtccttctaaactccgggacatgtacaccttcagatttctcctcctacatgcctttaatctaccaaatgtacgcttgtatcttcgtaatagcgctcctaggcaacactttagtcctctacacagtggcggctaatagaaaaatgcacacagtcaccaatctcttcatagcaaacctggctgtgggtgacctgctgataatggtgttctgtgtcccgttcagtgtcgcgtccatcatcgtcctgcagtactggccgttcggggaggtgctgtgtgtcttcgttaattattcccaggccgtgtcaatcttcgtctcggcctacacactggtagccataagcttggaccgctacctggccattatctacccgctccggccacgcatgactcgctgccaggctaaggtgatcattgcggcagtctggttcatggctctcgtcaccacactacccatcgctgtcttctctcgcctcgaccccactgaccttcgcgtgtatcagtggtacggacgcgaggtatgtcgagaggattggcccaacgaaatgctaagaaaatactacacgatgagcttaatgatcctacagtactttctgcctctccttgtccttatatacacgtactcaaggatcgcatgcaaggtgtggggttgtcgatctacccgtttctctcactctggatgcaacactcagatgacgctcgtggcagcccctgagacagcccggggactactgaggactaacgccagcgaccactcccccgccaagatgatacgaatgaccctggctgttgtccttgtctactccctctgctggctgcccttcaatatcctcatggtgatactggacttcgtggaggaggcaggtttctggacacacacccatcacgtctggttcatctgtcactggctggccatgtcccacgcctgctacaaccctctcattctctgctggatgaatacaaagttccgagaaggctatctgctggctctctaccgcctcctgccctgttgccgctcccgcctctcccactccctcctccagctcaggcagtcagcgggattgcagagggcgtatacttcaagcaccagggcatctcgcacgcagaggtacagcgcagtttatttggagtgtcaggtgagagagaacaatggtgacctccctccaacggtaccaattcatcaccagcttgatctgccagacccacttcaccaccaccacctccaccacctccaccacaaaccaccaccaccacagccgccgccaccaccacacaaaccctgggagtcaaagttataggttgtggtgttgagttactattggtgttgttgttgttagtgttaga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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