2024-05-17 04:39:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_043766215 318 bp mRNA linear PLN 21-SEP-2021 DEFINITION PREDICTED: Erigeron canadensis protein CLAVATA 3 (LOC122593738), mRNA. ACCESSION XM_043766215 VERSION XM_043766215.1 DBLINK BioProject: PRJNA763527 KEYWORDS RefSeq; includes ab initio. SOURCE Erigeron canadensis ORGANISM Erigeron canadensis Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Astereae; North American clade; Conyzinae; Erigeron. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_057761.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Erigeron canadensis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 14% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..318 /organism="Erigeron canadensis" /mol_type="mRNA" /isolate="Cc75" /db_xref="taxon:72917" /chromosome="1" /tissue_type="leaves" /country="Canada" gene 1..318 /gene="LOC122593738" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 32% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:122593738" CDS 1..318 /gene="LOC122593738" /codon_start=1 /product="protein CLAVATA 3" /protein_id="XP_043622150.1" /db_xref="GeneID:122593738" /translation="
MAFAFKSLSFSFILLLCVLFLLQISWGIYGAEKTISCDPSMKVMGNRKLLVVNGLEAKQEVLKIDGKKSTRKEDQYYVGWELRAAPLGPDPLHHHGADPKKPRTP"
ORIGIN
atggcttttgcattcaaatcactttctttctctttcattttgttactttgcgtgctttttctcttacaaatctcttggggtatctatggtgcagaaaagaccatctcatgtgacccttctatgaaagttatgggtaacaggaagttgttggtggtgaatggtttggaagcaaagcaagaagttttgaagatagatgggaagaagagtactaggaaagaggaccaatattatgtgggttgggaactaagggcagcaccattgggcccagacccacttcaccatcatggtgctgacccaaagaagccaagaactccttga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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