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2024-05-17 08:54:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_042902248             611 bp    mRNA    linear   PLN 22-DEC-2022
DEFINITION  PREDICTED: Lactuca sativa protein CLAVATA 3 (LOC122198043), mRNA.
ACCESSION   XM_042902248
VERSION     XM_042902248.2
DBLINK      BioProject: PRJNA432228
KEYWORDS    RefSeq.
SOURCE      Lactuca sativa (garden lettuce)
  ORGANISM  Lactuca sativa
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; asterids; campanulids; Asterales; Asteraceae;
            Cichorioideae; Cichorieae; Lactucinae; Lactuca.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_056627) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 22, 2022 this sequence version replaced XM_042902248.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_002870075.4-RS_2022_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Lactuca sativa"
                     /mol_type="mRNA"
                     /cultivar="Salinas"
                     /db_xref="taxon:4236"
                     /chromosome="5"
     gene            1..611
                     /gene="LOC122198043"
                     /note="protein CLAVATA 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins"
                     /db_xref="GeneID:122198043"
     CDS             38..337
                     /gene="LOC122198043"
                     /codon_start=1
                     /product="protein CLAVATA 3"
                     /protein_id="XP_042758182.1"
                     /db_xref="GeneID:122198043"
                     /translation="
MAFALKSLSLSFVLLLGLLLLLQLYDGLNGAETTLSSVAALKKASNRKLLVVNDSRAKEAVFMIQGKKEEEEGWELRAAPLGPDPLHHHGADPKKPRTP"
     polyA_site      611
                     /gene="LOC122198043"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ctctcttccatacttgtagtttacacacccaaaacttatggcttttgcactcaaatctctttccctatccttcgttttgctgcttggcttgcttcttctcctacaactctacgatggccttaatggtgcagaaacgaccctctcctctgtcgctgcattgaaaaaagccagcaacaggaagttattggtggtgaatgattcgcgagcaaaggaagcagttttcatgattcaggggaagaaagaggaagaggagggttgggaactaagggcagctccgttaggtccggaccctcttcaccatcatggtgctgacccaaagaagccacgaactccttaagccaaaatgatgtctttttacttaagagttgagacaatcttttttggctgttaagttgcagattatatatataatataatataatatatacatgcaatgacgattggcgacggactttatggatgaagttttttgttggcttttattttttgttttgttttgtggttttgatcatgtgaagtatgtatagcagcatcttgtgggagttgtaatgtttaaggttttgtaagtttgtttatggtatgaagtaatatatgttcagaagaaaacaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]