2024-05-16 22:33:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_027215970 469 bp mRNA linear PLN 04-DEC-2018 DEFINITION PREDICTED: Coffea arabica protein CLAVATA 3-like (LOC113696569), mRNA. ACCESSION XM_027215970 VERSION XM_027215970.1 DBLINK BioProject: PRJNA506972 KEYWORDS RefSeq. SOURCE Coffea arabica (coffee) ORGANISM Coffea arabica Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_039899.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Coffea arabica Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..469 /organism="Coffea arabica" /mol_type="mRNA" /cultivar="Caturra red" /isolate="CCC135-36" /db_xref="taxon:13443" /chromosome="1e" /sex="hermaphrodite" /tissue_type="leaves" /dev_stage="mature" /country="Colombia: Cenicafe Estacion Central Naranjal, Chinchina, Caldas" /lat_lon="4.970533 N 75.649180 W" /collection_date="Jul-2014" /collected_by="Alvaro L. Gaitan, Ph. D." gene 1..469 /gene="LOC113696569" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:113696569" CDS 53..391 /gene="LOC113696569" /codon_start=1 /product="protein CLAVATA 3-like" /protein_id="XP_027071771.1" /db_xref="GeneID:113696569" /translation="
MAFLSIVSKSAVMLFITALCFLFVMQLQASALADCKMGSGCFYVKATLHEVHSRKLLEGMKGNEMVFKSGMAGSASGGKGMKVGAGWELREAPMGPDPLHHHGGGPKNAKTP"
ORIGIN
cttctttctgagagattgcatttgcatgcactagtaaaagtattgtaccaaaatggccttcctttctattgtttccaagtctgctgtcatgctcttcatcactgccttgtgcttcctctttgtcatgcagctccaagcttctgccttggcagattgcaagatgggcagtggatgcttctacgtcaaagcaactctgcatgaagtgcattccagaaagttgcttgaagggatgaagggcaatgaaatggttttcaagagtggcatggctggatcggcaagtggtggcaaagggatgaaggttggtgctggttgggagttgagggaggctccgatgggtccagaccccttgcaccaccacggtggcggccccaagaacgccaagacaccatagtgcttttgtggatccccacccttttgagacagagttgtcttaagttttggctactccgatcctgctataaatctagaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]