LOCUS       XM_045261780            1938 bp    mRNA    linear   INV 04-DEC-2021
DEFINITION  PREDICTED: Portunus trituberculatus visual system homeobox 1-like
            (LOC123508227), mRNA.
ACCESSION   XM_045261780
VERSION     XM_045261780.1
DBLINK      BioProject: PRJNA783019
KEYWORDS    RefSeq.
SOURCE      Portunus trituberculatus (swimming crab)
  ORGANISM  Portunus trituberculatus
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea;
            Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda;
            Pleocyemata; Brachyura; Eubrachyura; Portunoidea; Portunidae;
            Portuninae; Portunus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_059278) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Portunus trituberculatus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Portunus trituberculatus"
                     /mol_type="mRNA"
                     /isolate="SZX2019"
                     /db_xref="taxon:210409"
                     /chromosome="24"
                     /tissue_type="muscle"
                     /country="Pacific Ocean"
                     /collection_date="2019-03-01"
     gene            1..1938
                     /gene="LOC123508227"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:123508227"
     CDS             263..1705
                     /gene="LOC123508227"
                     /codon_start=1
                     /product="visual system homeobox 1-like"
                     /protein_id="XP_045117715.1"
                     /db_xref="GeneID:123508227"
                     /translation="

MMERGTVHVSAPSLHAHAHMTALTAPTLPQRSPFAIQELLGLGSQSDSPPAPPASSSFGAGGSLGAAPHLLYSRHAALAAHQQHSLFPDSRHVWMNPALLPGMGVGGLGGPVTPVTMNSGMPPMLGLRPDAHAAHPDAHSPGLDSSDSTSKLFDGQNVSLGKKKKKKRRHSRTIFTSFQLEELEKAFKESHYPDVYAREMLSLKTDLPEDRIQVWFQNRRAKWRKTEKTWGKSTIMAEYGLYGAMVRHSLPLPDTIMKSVDNGEECPAPWLLGMHRKSMEAAQTLQESEADGEASDGREEPQLHKSQQPPQLQNSSGEPQTEQQEQNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGHPGEHSGDPESVFLRDSSHFPMDKDVGGNSFVGSRAEGSGANFNGRGPSQASQSPIQDDLRSSSIAALRQKAQEHAARMSINNNLAGLHHPDPLHHHHHHHHHLGGHF"

     misc_feature    order(767..781,785..787,836..838,854..856,893..895,
                     899..904,911..916,920..928,932..937)
                     /gene="LOC123508227"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    773..934
                     /gene="LOC123508227"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(773..775,782..784,902..904,911..916,923..925)
                     /gene="LOC123508227"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1553..1609
                     /gene="LOC123508227"
                     /note="OAR domain; Region: OAR; pfam03826"
                     /db_xref="CDD:427530"
     polyA_site      1938
                     /gene="LOC123508227"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggcagcctccacaccccactgtgatctcttctgcaattgttactcctggcggtatggactgaaccccgtgatacctacactagttaattagtggccacactggaaaaggacgcagtattgaggcatttacagtggttttacctggcggagtgactgttcctaaggcagcggtgacatatactagaggtgatcggcctgcgggcggcggctgcggcatggtgatcggccccggctggtgactcaccgcccgcacgcccgcgccatgatggaacgtggcaccgtgcatgtgtcggcgccctccctccacgcccacgcccatatgacggccctcacggcgcccaccttgccccagcgctcgcccttcgccatccaggagttgctggggctgggctcccagtctgactcgcccccggctccgcccgcgtcctcttccttcggggctggcggctccctcggggcagcgccccatctcttatactcccgccacgccgccctcgccgcccaccagcagcactcgctgttcccagactcccgccatgtctggatgaaccccgcccttctacccggcatgggcgtgggagggctgggcgggccagtcacgcccgtcaccatgaacagcggcatgcccccaatgctgggcctccgaccagacgcccacgccgctcatcccgacgcccacagtccagggttggattcctcggattccacaagcaagctcttcgatggacagaacgtcagtcttgggaagaagaaaaagaagaaacgaagacacagtcgcaccatctttacgtccttccaactggaggagctagagaaggccttcaaggaatcacactaccctgatgtctacgcccgggagatgctgtcccttaaaaccgaccttcctgaggaccggatacaggtgtggttccagaaccgtcgagcgaagtggcgcaagacagagaagacgtggggcaagagcaccatcatggcggagtacggcctgtacggcgccatggtgagacactctctgcctctacccgatacgatcatgaagtccgtagacaacggagaagagtgcccggcgccctggctcctagggatgcatcgaaagagcatggaggcagcgcagacgctgcaggagtcagaagcggatggggaagccagcgatgggcgggaggagcctcagctacacaagtcgcagcagcctccgcagcttcagaattcctcaggagagccgcagacagagcagcaagagcagaaccagcaacaacaacagcagcagcagcagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacagcaacagcagcaacagcaacagcaacaacagcaacagcaacagcagcagcagcagcagcagggccatcctggagaacacagtggggaccctgagtccgtcttcctacgggactcctcacacttcccgatggacaaggacgtgggcggtaacagcttcgtggggtcgcgagccgagggtagtggggccaatttcaacggcaggggtccctctcaggccagccagagtcccatccaggacgacctccgctccagcagcatcgcagcgctgcgacagaaggcgcaggaacacgccgccaggatgagcatcaacaacaacctggcgggcttgcaccaccctgaccccctccatcaccaccaccaccaccaccatcacctcggtggtcacttctgatccacagtgacagcgtctccaccccctccagcacccacgccctctccacccctcctcagttggaaccactaccactgtcaccaaaacgaccactttgatccaccgtagtagcgaccgggtgtctccccacgcacattcaccgctgccacgccccaacacaccacaccgccagctcttcaaactcctaatctacttctgcataagttaaagctggtgtagttgccatctcccca

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