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2024-05-04 20:53:06, GGRNA : RefSeq release 222 (Jan, 2024)

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Results:

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Monodelphis domestica microRNA mir-375 (MIR375), microRNA. (63 bp)
REFERENCE 2 (bases 1 to 63) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 cccgcgccgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggc
position 39
Synonym: mdo-mir-375; Mirn375
NR_032203.1 - Monodelphis domestica (gray short-tailed opossum) - NCBI
Macaca mulatta microRNA mir-375 (MIR375), microRNA. (64 bp)
REFERENCE 2 (bases 1 to 64) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggc
position 40
Synonym: mml-mir-375
NR_032498.1 - Macaca mulatta (Rhesus monkey) - NCBI
Bos taurus microRNA mir-375 (MIR375), microRNA. (64 bp)
REFERENCE 7 (bases 1 to 64) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggc
position 40
Synonym: bta-mir-375; mir-375
NR_031317.1 - Bos taurus (cattle) - NCBI
Canis lupus familiaris microRNA mir-375 (MIR375), microRNA. (70 bp)
REFERENCE 2 (bases 1 to 70) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 gccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggcagggg
position 41
Synonym: cfa-mir-375
NR_049460.1 - Canis lupus familiaris (dog) - NCBI
Apis mellifera microRNA mir-375 (Mir375), microRNA. (100 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 atcgattgaattatcagtttggtgcatcgatcctaacgatcaacaaacttttcacttgaaagtttgttcgttcggctcgagttatcaaactgaatggatg
position 63
Synonym: ame-mir-375
NR_034295.1 - Apis mellifera (honey bee) - NCBI
Anolis carolinensis microRNA mir-375 (mir375), microRNA. (100 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 ctgggctactgctgtgcttgcctcgcgtcgagccccacgcacaagacctgacgtgaatgttttgttcgttcggctcgcgttaggcaggtccagcctatct
position 61
Synonym: aca-mir-375
NR_129967.1 - Anolis carolinensis (green anole) - NCBI
Danio rerio microRNA 375-1 (dre-mir-375-1), microRNA. (80 bp)
M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M and Tuschl T. TITLE The developmental miRNA profiles of zebrafish as determined by small RNA cloning JOURNAL Genes Dev 19 (11), 1288-1293 (2005) PUBMED 15937218 tgcacttgctttacgttgagccacacgcacaatacatgtggattcagttttgttcgttcggctcgcgttaagcaagtgca
position 49
Synonym: mir375-1; mirn375-1
NR_030132.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 375-2 (dre-mir-375-2), microRNA. (83 bp)
Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M and Tuschl T. TITLE The developmental miRNA profiles of zebrafish as determined by small RNA cloning JOURNAL Genes Dev 19 (11), 1288-1293 (2005) PUBMED 15937218 tgtacttgtctcacgttgagccacacgcacaatgcctgcagatgaaagggttttgttcgttcggctcgcgttacgcagatgca
position 52
Synonym: mir375-2
NR_030133.1 - Danio rerio (zebrafish) - NCBI - UCSC
Oryctolagus cuniculus microRNA mir-375 (MIR375), microRNA. (57 bp)
Only REFERENCE 2 (bases 1 to 57) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 gcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtga
position 36
Synonym: ocu-mir-375
NR_162622.1 - Oryctolagus cuniculus (rabbit) - NCBI
Pan troglodytes microRNA mir-375 (MIR375), microRNA. (63 bp)
REFERENCE 2 (bases 1 to 63) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgagg
position 40
Synonym: ptr-mir-375
NR_035777.1 - Pan troglodytes (chimpanzee) - NCBI
Taeniopygia guttata microRNA mir-375 (MIR375), microRNA. (72 bp)
REFERENCE 3 (bases 1 to 72) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 cctggcgtcgagccccacgtgcaatacctgacctgaacgttttgttcgttcggctcgcgttaggcaggtcca
position 41
Synonym: tgu-mir-375
NR_049106.1 - Taeniopygia guttata (zebra finch) - NCBI
Eptesicus fuscus microRNA mir-375 (MIR375), microRNA. (79 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 gctcccgccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggcaggggcgg
position 47
Synonym: efu-mir-375
NR_129265.2 - Eptesicus fuscus (big brown bat) - NCBI
Homo sapiens microRNA 375 (MIR375), microRNA. (64 bp)
Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P and Stoffel M. TITLE A pancreatic islet-specific microRNA regulates insulin secretion JOURNAL Nature 432 (7014), 226-230 (2004) PUBMED 15538371 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggc
position 40
Synonym: hsa-mir-375; mir-375; MIRN375; miRNA375
NR_029867.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Mus musculus microRNA 375 (Mir375), microRNA. (64 bp)
Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P and Stoffel M. TITLE A pancreatic islet-specific microRNA regulates insulin secretion JOURNAL Nature 432 (7014), 226-230 (2004) PUBMED 15538371 ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggc
position 40
Synonym: mir-375; Mirn375; mmu-mir-375
NR_029876.1 - Mus musculus (house mouse) - NCBI - UCSC - RefEx(expression)
Xenopus tropicalis microRNA mir-375 (mir375), microRNA. (70 bp)
REFERENCE 2 (bases 1 to 70) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 cctgacgccgagcctgacgtgcaatgctttgtgtcaacgttttgttcgttcggctcgcgttaagcaggtg
position 41
Synonym: xtr-mir-375
NR_049711.1 - Xenopus tropicalis (tropical clawed frog) - NCBI
Rattus norvegicus microRNA 375 (Mir375), microRNA. (75 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 tccggccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggcaggggc
position 45
Synonym: rno-mir-375
NR_032271.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Sus scrofa microRNA mir-375 (MIR375), microRNA. (75 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 cccccgccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggcagggg
position 46
Synonym: ssc-mir-375
NR_162180.1 - Sus scrofa (pig) - NCBI
Takifugu rubripes microRNA mir-375-1 (mir375-1), microRNA. (77 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 tgtacttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcggctcgcgttatgcaggt
position 49
Synonym: fru-mir-375; fru-mir-375-1; mir375
NR_105376.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Takifugu rubripes microRNA mir-375-2 (mir375-2), microRNA. (77 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 tgtacttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcggctcgcgttatgcaggt
position 49
Synonym: fru-mir-375-2
NR_127730.1 - Takifugu rubripes (Fugu rubripes) - NCBI
Nasonia vitripennis microRNA mir-375 (Mir375), microRNA. (102 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 ctcagcaataggcttcacctggtccatcgatcccaacgatcaataaactgtgttattaaacaagtttgttcgttcggctcgagttattaggtgagccttgtc
position 65
Synonym: nvi-mir-375
NR_039043.1 - Nasonia vitripennis (jewel wasp) - NCBI
Saccoglossus kowalevskii microRNA mir-375 (Mir375), microRNA. (89 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 ccggtgttgttggattgtccgggccccacgatcatggcttatagcgtaaacgctttgttcgttcggctcgcgcgacttaataacacgat
position 54
Synonym: sko-mir-375
NR_037560.1 - Saccoglossus kowalevskii - NCBI
Gorilla gorilla gorilla microRNA mir-375 (MIR375), microRNA. (112 bp)
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 cgaccgccaggccccgggccctccgctcccgccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgaggcaggggcggcctctcagc
position 71
Synonym: ggo-mir-375
NR_106402.1 - Gorilla gorilla gorilla (western lowland gorilla) - NCBI
Strongylocentrotus purpuratus microRNA mir-375 (Mir375), microRNA. (100 bp)
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 cgagctcaacgtgcaaaacttgagataaggtcagctgttcggctggccgctacatgctgttttgttcgttcggctcgcgtcaaattgcagtcacactatc
position 61
Synonym: spu-mir-375
NR_036388.1 - Strongylocentrotus purpuratus (purple sea urchin) - NCBI
Pediculus humanus corporis microRNA, putative (Phum_PHUM292550), miRNA. (103 bp)
Walenz,B., Hass,B., Bruggner,R. and Strausberg,R. CONSRTM The Human Body Louse Genome Consortium TITLE Direct Submission JOURNAL Submitted (02-APR-2007) J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA attttgtcggttgcgtatcgacccgcgccttctgaacaaattagtattattatctatggtaatttgttcgttcggctcgagttattacgcatctcgcgaaaca
position 63
XR_009833519.1 - Pediculus humanus corporis (human body louse) - NCBI
Gallus gallus microRNA 375 (MIR375), microRNA. (65 bp)
REFERENCE 3 (bases 1 to 65) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 cctggcgtcgagccccacgtgcaagacctgacctgaacgttttgttcgttcggctcgcgttaggc
position 41
Synonym: gga-mir-375; mir-375; MIRN375
NR_031552.1 - Gallus gallus (chicken) - NCBI - UCSC
Aspergillus niger CBS 101883 uncharacterized protein (BO96DRAFT_436136), partial mRNA. (402 bp)
gtgggttgttttgcccaggcacgcggagttgtatcccaagagagaaggtctggccactcctgattgggttgccttgagccagaaggcgtccgagcgagcgatagcagaaccttcagctgcggtcaacgccgatcaccctggtgtcccgtcggctgccagagttttgccgatcgcgctgcgcagaaatcagttggcaactcttccccacagtcaatctgggatgagcgactgcaataccactccgggggagtgtgagccgaggctgcatcattaccatgctcataagtctcattctttgttcgttcggtattgcatcccttgcaccgacctggtgtaccatctgattttgagtgcagcaagggtaaggttcttatga
position 321
XM_025601064.1 - Aspergillus niger CBS 101883 (Aspergillus lacticoffeatus CBS - NCBI
Blastocystis hominis mRNA. (252 bp)
Wincker P., Genoscope - CEA, Sequencing, 2 rue Gaston Cremieux, F-91057, FRANCE atgaattgcatcgttctgaacgagtggtccggattaacgagtaatcttgtgaagctggggttaggttccgtcagcatgttcttcgacattctgttcatgatccagcactttatcctgtaccctagccatgaggagccagcggaagaaaagctcatcaccgatgaagtggaagctctcgttttggagaagcgtgattttgttcgttcgggcagcaaccgaatcattgatattagtgttattaagaccccgtaa
position 196
XM_013042318.1 - Blastocystis hominis - NCBI
PREDICTED: Paramacrobiotus metropolitanus uncharacterized LOC129600550 (LOC129600550), ncRNA. (335 bp)
ncRNA_class="lncRNA" /gene="LOC129600550" /product="uncharacterized LOC129600550" /db_xref="GeneID:129600550" ORIGIN // gccagaccgggaagatacgagaattggaacaactgctggtgtggggtgctaccaatgcttcttttcctccacctaacgagccgctatgtggatatctcaagcaactcccgccgtgtatgcctggtgataatcgatttacatacattctgtcgatcagtttagtttgttcgttcggggccctcactattttgggatgcgcagtgtacatcaaacgcaaagcagacaatcagttgctccgtgacccatggtggcaagtgtatctgcaagcaccagattacagagtagtatcccggcactcgatatcagtttcacgagcagtatctcggcactcgatt
position 163
XR_008692074.1 - Paramacrobiotus metropolitanus - NCBI
PREDICTED: Musca vetustissima enhancer of split m4 protein-like (LOC133336092), mRNA. (285 bp)
ORIGIN // atggatagcaccaaaattagcaagctgctaaaagaaatctacaatctacgtaagagaagccgcgagtgctgccttattggaatcgccggaatcattggataatagccttaatgaaagcctagaatcggattgtggatcaatggaatcctatgaaaatattgcaaatgaaagaatctcggccaaggtataccgtggaagacaatcgtcccagtacaacttcggtaccggtttattttgttcgttcggggcacctacttttggactaattga
position 244
XM_061544390.1 - Musca vetustissima - NCBI
PREDICTED: Vespa mandarinia uncharacterized LOC118444165 (LOC118444165), ncRNA. (461 bp)
GeneID:118444165" ncRNA 1..461 /ncRNA_class="lncRNA" /gene="LOC118444165" /product="uncharacterized LOC118444165" /db_xref="GeneID:118444165" ORIGIN // aacatcgaatgtaaacatctcaggatgtctttgctgcaagtatcaacgattatttaagattatcattgcaatcgcgcgcgaagcaatgatttaatcgaatattttcagtatcgctgaaattatcgcgaagtagaagcagtgtttgttcgttcgggtttcgcgatttaaacaataagtgtattttcatcgattgtgtgcaatgcaatcgttagagtcagtgtttgttcacgaaaagtgttttgcttttttaacagtcacatagactgtatttataaaagacagtagagtttcgcgaagtaaattcagtgaccgttcgttttatttatcgcgtaatagaatcagtgcatcattgaagaggatctcaatcaacttcgatgttgacctacttaattttaaagaatcatccatcttcaatttcgacttcaactgtgaacgagtgttttggagc...
position 147
XR_004838898.1 - Vespa mandarinia (Asian giant hornet) - NCBI
PREDICTED: Helianthus annuus uncharacterized LOC110887381 (LOC110887381), ncRNA. (468 bp)
ORIGIN // aagaacctagacgtggttatcctccgtacattcacgttggcgacccatgagcctatccgactcttccaaccatttccaacatcccacaacctgtttcgatacccttcacacaactcgacaccctcactattcgataacatctttcgtagaacttcgcactcttgcctggacaaccggagcttcgccggaaggaaacaaacattgccggaggacctgctagtcaccggtgatacgcgtagttttcatcggaattcgactcgactcgcgttcggttaaccgttttgttcgttcggaaatccttattttatactcgtacgaatctccttatacgcaaccactgtgaacaggtacgaagagaagattggacataggatgtgccttagttaacaagaaacggattagtgtagtttatttatgtctcgcgtttgtaattgtttatttgaataaattgttttgtgaaaca
position 286
XR_002563268.2 - Helianthus annuus (common sunflower) - NCBI
Heterobasidion irregulare TC 32-1 uncharacterized protein (HETIRDRAFT_451633), partial mRNA. (321 bp)
US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (21-MAY-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA atggcccccccgaccatgccagctcgaggcgatcgatccgcacccactttcgaccccagccgaccacgcactcttcgccgatactttgcagaccttgactttcactttgttcgttcggcagtcaacagcgacttggagcggaagagacacgcctgccgattcgccgatcttgacacctccgacctctgggagtccctgccgaccttttcggaccacgcgaagacataccaggacttctgtgactctgtgtacaagctttatcctgccggatcggcattggctcactgggggatctgggcgtctattaccgaagatttctag
position 106
XM_009548262.1 - Heterobasidion irregulare TC 32-1 - NCBI
Heterobasidion irregulare TC 32-1 uncharacterized protein (HETIRDRAFT_450487), partial mRNA. (321 bp)
US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (21-MAY-2012) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA atggcccccccgaccatgccagctcgaggcgatcgatccgcacccactttcgaccccagccgaccacgcactcttcgccgatactttgcagaccttgactttcactttgttcgttcggcagtcaacagcgacttggagcggaagagacacgcctgccgattcgccgatcttgacacctccgacctctgggagtccctgccgaccttttcggaccacgcgaagacataccaggacttctgtgactctgtgtacaagctttatcctgccggatcggcattggctcactgggggatctgggcgtctattaccgaagatttctag
position 106
XM_009546745.1 - Heterobasidion irregulare TC 32-1 - NCBI
PREDICTED: Notolabrus celidotus uncharacterized LOC117820045 (LOC117820045), ncRNA. (472 bp)
ctgtgctcgccctgaggatcctctctgtcgttttcatccatgaggcgtggagcgtaaggggtggagagagagacggagagacagagagagagactggaggtataaaaggtgtatacctgtcacaaacggcacacacgttcagtgcgcgtaaaaggatacctgaagacacaggagccagctgttacgcgcccattgtctgtctctcactcggatcatcattactttttgttgcgcctttttcatgtctgtatttgcttcacgttgagcctcacgcacaatacctgaagatgaagttttgttcgttcggctcgcgttatgcaggtacgggttggcaactggaaaagacgcaaactttgttttttcgttatgggggcatccccgctgcatcactgttgttgacaatgtcaatccgcagttaagactctgactgaagtaaagttgttttaaatttg
position 315
XR_004632676.1 - Notolabrus celidotus (New Zealand spotty) - NCBI
PREDICTED: Chrysoperla carnea uncharacterized LOC123301486 (LOC123301486), ncRNA. (351 bp)
ORIGIN // tcacaggatgatttttgtgtgcaaattattcaattgaaacagtggtgtgcattagcacctttgccaaaactcagtaaaagagatgttattcaattttggcaagatgtgaataaaatttgtgaagataacacaacattagtaacttgctatgatggagcattggctagtggtttatttacagctttatcatttatcatcgaacaaatagattttgaacatgaatgtgatatttcattggctgttcgaacaattcgacataatcgacccaattttgttcgttcggaagaacaatttaaatacttatatgagattgcaataagttatgtcgacagttttagcacatactcgaat
position 271
XR_006535435.1 - Chrysoperla carnea - NCBI
PREDICTED: Rhipicephalus microplus uncharacterized LOC119188222 (LOC119188222), ncRNA. (570 bp)
tcggcacgcacgctcccctagaccacggactctcttgcacgtggcacgaggacagagtcttcccgcctttatagctcgtcgtacgcctaaagaggaacggcagcgcagaaacgtacacgataagagaatcatcgcagcagacttatcgcaagaccttcgactacgccttcttcccttttccgaggtcgcctccattcgacttctaagcctgcgaccacggtcacccttgcggggacaatgcacgccctggggctgactcgagctgcccgtgcaaaactggaacctttgcgttgttttgttcgttcggctcgagttaggaaccggcgtggaagcgccgttggatgcaaaccgacacgccctgccagggtctctatcgtcctgcctgccctttcccgtctcgcttgaagtgctccccgaagcgttcaataaagtttaccgtaatatttttttatgttcgaaccacggc
position 399
XR_005111947.1 - Rhipicephalus microplus (Boophilus microplus) - NCBI
PREDICTED: Anguilla anguilla uncharacterized LOC118224051 (LOC118224051), ncRNA. (580 bp)
aacgtggacggaaaggcgaagtgtctcctaacctgtggacatcttcttcatcgtcttatttaacacttaccgccaccacaggtaagtctggatggagcgcatcaaggatccaatatagacagcgatacattatttcgaatgggctacagcctactgcaacaagctttcctggcgccgcagtacagtgatacaagaagagtacaacatgatagcctatttggaactctgaaacttccgttttttttctgtgcttgcctcacgttgagcctcacgtacaatacctgaagatgaagttttgttcgttcggctcgcgttaagcaggtacagatttgcttcatatctgaaaacggaaataatggaaagttctcaaaataaacaatactcctcaattaagataaagtcagtttatattgtgtgcattagcctatatgttaacgtacctatgaggcaattcatttgttggaagctgttgggaattcatagcatatgttgctatttgtgtagttactttacttgattttgttataatattctaataaaaccctgttatgtaaaatcaa
position 300
XR_004764559.1 - Anguilla anguilla (European eel) - NCBI
PREDICTED: Camelina sativa CLAVATA3/ESR (CLE)-related protein 1 (LOC109126593), mRNA. (420 bp)
atttcatcagcgtctcgaccactgcagcagcgatctccaaacgcagatggtgttaaacgagggcgcatgatgagagaagcagagaaagtgttgaaagcgagtatggagaagctaatggaaagaggttttaatgagtctatgagactaagccctggaggtcccgatcctcgccatcactaagtaatatattagtagatttacattggaggatgtatattttgttcttgatcgagaagaaccggtttagaagaaaacatatcgatccttttctcttatttttttttgtaagccttgtttgttcgttcggcgta
position 404
XM_019230281.1 - Camelina sativa (false flax) - NCBI
PREDICTED: Syngnathus acus uncharacterized LOC119115173 (LOC119115173), ncRNA. (599 bp)
agagagagagggagagagagagtagaggtataaaagcttatacctgatcctgactagagttcagtgcgcacaaaagatgaatgaagccaaacaagggcgggcaggcgctccatcacgttcttccgcttctgctttttcaaggtcctgcgcggcgcgcaaaagagacgccagctgttagggagcaccgtgcgcaatgaatgcgcaatttggagcccaagcacatctgcagtcttttccacgcgcgtccgtatttgcttcacgttgagccccacgtacaatacctgaaggtgacgttttgttcgttcggctcgcgttacgcaggtacgggtcggcttctggagacgcaaagtttgcttgacggttgcttagcctcactgatgtgtgtgtgcccccccccccccacaccctccattagaataaacactttgaatccacaagctgcccaacaagttgctactgtaacctcggggacaagttgatggtaattttaatttttgcaccaagttgaatgaaacctgttttattgagtgtgtatgccacccaatttgtacacaacccaatgtatacttttaaataaactagaactatgttttatttta
position 295
XR_005096106.1 - Syngnathus acus (greater pipefish) - NCBI
PREDICTED: Glycine soja RING-H2 finger protein ATL43-like (LOC114372535), mRNA. (462 bp)
gcaaaaggaaggactcaattgcgcggtgtgcctgaacaagtttaaggtcgcgaaggttctccggctattgtcgaaatgcaagcacgcgtttcacgtggagtgtgtggactcgtggttggacgtgcattctatgtgtcctctctgctgctattgcatggatccagaggacattttcttggtagaggaagcaaagcctttccaccaaagtcatcaacaacagaacaacgatcagggacgcgtgtgtttgaatctggacctggagaagcaggggatagtaaagtctcgacagaggcatttgttcgttcggggtgggggaaggagaaacaacagaggagtagcaacagagtcggaggtggacgacgtcatttag
position 387
XM_028330143.1 - Glycine soja - NCBI
Aspergillus niger hypothetical protein (An16g00820), partial mRNA. (444 bp)
agaaggtctggccagtggccgcggccgccagccttacaggcaggagatacatctagctcctgattgggttgccttgagccagaaggcgtccgagcgagcgatagcagaaccttcagctgcggtcaacgccgatcaccctggtgtcccgtcggctgccagagttttgccgatcgcgctgcgcagaaatcagttggcaactcttccccacagtcaatctgggatgagcgactgcaataccactccgggggagtgtgagccgaggctgcatcattaccatgctcataagtctcattctttgttcgttcggtattgcatcccttgcaccgacctggtgtaccatctgattttgagtgcagcaagggtaaggttcttatga
position 363
XM_059744892.1 - Aspergillus niger - NCBI
PREDICTED: Dermacentor andersoni uncharacterized LOC126541701 (LOC126541701), ncRNA. (634 bp)
ctttgcacgtggcacgaggaaggagcgaagaacgagacttcccgcctgcagccgccgtccgcatcaagagaggaagagcagtggagaagaagggcgataagaagagtatcgaagaggacttatcaccaaacgacgcgcaaggcttcggcagtttctacaccttcgtcacgacctcgagcactctcgcccttcaacttctcagtccggcgaccggggcaattgacaccatgtgagacaacgcacgccctggggctgactcgagctgcccgtgcaaaactggaacctttgcgttgttttgttcgttcggctcgagttaggaaccggcgtggaagcaccgatggaacgagccggcaccaccctcccgcaaccctcccccgctctcgccctgcctgccctttcctgtctcggcgggggtgctccccgaagcgttaaataaagatttactgcacttttcaa
position 473
XR_007601703.2 - Dermacentor andersoni - NCBI
PREDICTED: Amaranthus tricolor stigma-specific STIG1-like protein 4 (LOC130818696), mRNA. (531 bp)
gene="LOC130818696" /note="Stigma-specific protein, Stig1; Region: Stig1; pfam04885" /db_xref="CDD:428174" ORIGIN // atgaagcagatagcttgtactatttatctatttttagtaacaataatagcacaagtagatgcagaatttaatagtattgaatcaggtttaaacattaccctctacgtcttctccatggcttaaacgggtttttaacccacgagctcaagcgcaaggatgttggaataggccttggatttgttcgttcgggcaagttcctcctcgaagattatgttgtatgaatcgttgtgttgagatcatatcggatcctctaaattgcggtttttgtggcataagatgcccatttacatggcaatgttgtaatggtttatgtatgaatgtaaacattaatccttttcattgtggtaaatgttggaataggtgtgcaataggaagaccatgtgtttttgggttgtgtggttatgctcaaccctttcctccatttcctttcccaccaactttgcctggcccacctttccctttccctttcccattaccttcccc...
position 182
XM_057684855.1 - Amaranthus tricolor - NCBI
Aspergillus oryzae RIB40 unnamed protein product (AO090010000754), partial mRNA. (507 bp)
aagttgaagctcggtatcgatcacaaccaggcccctcgcgaagaccttgccaaatttggagaggcagccgtacaatcaggcaagatcacacggcaaaccttgaatcgactcaagcggcaggaagccatcatggccaattcagcggagcattacccattatttgtagctgcaatccttgtcgctcttcacgcgggtgtgtccaatgatattattaaccgcattggactatggtatgcggtatcacggctggcgttcgggttctgctacaagtacattgagtctctcaaactgagctttgttcgttcggtcttttggtggtcaggcaatatttgctgcttcaccgctttttggtttgcctcgaagaaactgtga
position 430
XM_001827652.3 - Aspergillus oryzae RIB40 - NCBI
Boeremia exigua uncharacterized protein (C7974DRAFT_381153), partial mRNA. (405 bp)
gttttttgggtccctggagatcatcgccgccaccgtcaagtttatcgtcagttgcttcgttaaacacattctctatggtttctacgcgcttaccaatgtcacaaatgccactggaattatctataggttcactggtaccttgcagctcacaacgcaagaaattggagatattaccttgtcatatggcagaaagaagcccaccggttatgccacgcctacttcttccacctatatcacctgctttccttttgagcagaccgcctttactactggaggtacgccaaactggcagcctttgttcgttcggacagcgacgttgagcatagtccagtgtgggaggtggagcccgacgtccccgtatccatag
position 333
XM_046140570.1 - Boeremia exigua - NCBI
PREDICTED: Labeo rohita uncharacterized LOC127166457 (LOC127166457), ncRNA. (666 bp)
tgatttttgtcgactatcccgtcactggccaggctgattcacaggacctgcaggtacggaaaggaccatgtcgactgaggccttccatcagagcaacctggatgtgaaactaggtgagccagacaggtaaagggtaggggacacatctgacgaatgaaaagcttcggattcaaatttttgacagtattttctacagtatttttggagtttatcacagtgcacatccagtacttcgatggataaaactgcacttgctttacgttgagccacacgcacaatacatgtggattcagttttgttcgttcggctcgcgttaagcaagtgcagaacttcttcggtgcaaacgtctgtgacctttttggattagaagcataactgctgtgcttttttgtttggaattgttttttagatggaaaaccacataaatgcaaccgttggtgtgagattttcacagacaaatgaatgagtcacaactgataatttatcttctgaaatggtcatgatttacaatgtcacctgttatccaacatcatgtttgttgagttattcacttcctctcttctgtgctggttttaaatgagtgagggcgaagttctcaca...
position 313
XR_007827910.1 - Labeo rohita (rohu) - NCBI
PREDICTED: Myxocyprinus asiaticus uncharacterized LOC127447901 (LOC127447901), ncRNA. (674 bp)
cctcccatttgactccctgtgtcaatattggatgagaggaaagctccgtgtgacaggtgtccacgacagagttccgcgcgctacacagacagcacagatcgatgtatttacccgcgtgcaactgactatatgcaccaacgttataaagcctcgtgagagatgagagttgtcttaaagggaaaaggacaagtcatcttccgagacataatggattaatcagtatgaaggatggatcttttgtgttttctgtacttgtctcacgttgagcctcacgcacaatacctgaagatgggttttgttcgttcggctcgcgttacgcagatgcagacacgcttcagtaaaacacgagaacaactggacggtttcactgctggcagagtttgaagattatgctgttgaccgaagttttggcacagtttaaggaaagaaagaataggggccacccaatacaaacaacaa
position 484
XR_007898433.1 - Myxocyprinus asiaticus (Chinese sucker) - NCBI
PREDICTED: Denticeps clupeoides uncharacterized LOC114796689 (LOC114796689), ncRNA. (533 bp)
ORIGIN // tggacgagcgcggcgaatcctttccctttaagacccgctatataaaagagaaaagaaatagaaaagggggcatctcggcgggtcacggctggcggccgcgccaggtgtcccttcacctgcggcgacgcgctcgggggtccgcaggtcgtgatggacgaactcgagcccgtcggacaggaggttcgaactcgggagagaactttctggaggacctgaaacagcatctgctgtatttgcctgacgttgagccatacgcacaatacctggacacgatgttttgttcgttcggctcgcgttaagcaagtacagacatccagcaaagacagatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgggaagccattacctgtctgttgtatttagtccatgttgtacagcataaaatgttattcctgaccctcagtaggcctatacaactctcccaagacgcacatgtgcttattcctgggcgcaggaaaatggtgaataaaggatgatgacaagtta
position 277
XR_003750775.1 - Denticeps clupeoides (denticle herring) - NCBI
PREDICTED: Culex pipiens pallens E3 ubiquitin-protein ligase RNF180-like (LOC120413791), mRNA. (717 bp)
translation="MLIKCRKCSNPLAAIDDAHVLAVHSRREFAADSLPACPTERDNAEVFLHEDHLPGWMNAEIEQTQWTRGKLKCTKCGQKVGSFDFVSGVRCKCPVGGSVLPAVHLVRSKVDLRKSVG" polyA_site 717 /gene="LOC120413791" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN // cgtaaacaaacaaacgtggttttcagtgtgccaaagcaaaggtagctttgttcgttcggatttcgacggcctaatcagctggctctgggcgctgcagacgacggttatcacactcacgtgggagatcgcaccggccggcgtaacgattccccaacaatgctgatcaagtgccgcaagtgctcgaacccgctcgccgccatcgacgacgcccacgtgctggcggtccattcgaggcgcgagttcgccgcggattcgctgccggcgtgccccaccgagcgggacaatgcggaagttttcctgcacgaggaccacctgccgggctggatgaacgcggaaatcgagcagacccagtggacgcggggaaag...
position 47
XM_039574741.2 - Culex pipiens pallens (northern house mosquito) - NCBI
PREDICTED: Nerophis ophidion uncharacterized LOC133564912 (LOC133564912), ncRNA. (530 bp)
LOC133564912" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:133564912" ORIGIN // gcacgtcagccaaaagacaataaacaaggccgagctcgtccgccttcgtggcctgcgcggctccctccttaaaaggggagccaagcgacgacagctgctgaggagcgccacccttgacttcttgttccgtatttgctttacgttgagcctcacgcacaatacctgaagacgacgttttgttcgttcggctcgcgttacgcaggtacggatcaacaccgacaagggagtcgttgttttttttccggatttagtcaccgtggatgcatctgagataagataggctccagcactcacccggaaaaggacaagcggtagtgcatggatggattcacggtgcaatcgacaattattgtttttttttctcaataaaagacatttttaacccagtaggaaatgagaacgagtaacttttgtgagaatgtctttgttatgttgccttgtttgcttacagctggcctgacttgtacattgaaatcatctaaataaagaatg...
position 181
XR_009809369.1 - Nerophis ophidion (straightnose pipefish) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/seq%3aUUUGUUCGUUCGG
lang : en | div : | spe : | query_string : seq:UUUGUUCGUUCGG | format : html | download : 

0.000 | 0.000 | search_start;
0.079 | 0.079 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TTTGTTCGTTCGG)?to=0&format=json
0.123 | 0.045 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TTTGTTCGTTCGG)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.128 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]