2024-05-18 16:24:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_028330143 462 bp mRNA linear PLN 12-MAR-2019 DEFINITION PREDICTED: Glycine soja RING-H2 finger protein ATL43-like (LOC114372535), mRNA. ACCESSION XM_028330143 VERSION XM_028330143.1 DBLINK BioProject: PRJNA525136 KEYWORDS RefSeq; includes ab initio. SOURCE Glycine soja ORGANISM Glycine soja Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041003.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Glycine soja Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..462 /organism="Glycine soja" /mol_type="mRNA" /cultivar="W05" /db_xref="taxon:3848" /chromosome="2" /tissue_type="hypocotyl of etiolated seedlings" /dev_stage="Seedlings" /country="China: Henan" gene 1..462 /gene="LOC114372535" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:114372535" CDS 1..462 /gene="LOC114372535" /codon_start=1 /product="RING-H2 finger protein ATL43-like" /protein_id="XP_028185944.1" /db_xref="GeneID:114372535" /translation="
MVVSFTERKNFGIDWSMVESLPNFKFRVLRGQKEGLNCAVCLNKFKVAKVLRLLSKCKHAFHVECVDSWLDVHSMCPLCCYCMDPEDIFLVEEAKPFHQSHQQQNNDQGRVCLNLDLEKQGIVKSRQRHLFVRGGGRRNNRGVATESEVDDVI"
misc_feature 112..237 /gene="LOC114372535" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:450175" misc_feature order(112..114,121..123,169..171,175..177,184..186, 193..195,226..228,235..237) /gene="LOC114372535" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN
atggtggtgtcgttcaccgaaaggaaaaacttcggcattgactggtctatggtggaatcattaccgaacttcaaattcagagtgctacgggggcaaaaggaaggactcaattgcgcggtgtgcctgaacaagtttaaggtcgcgaaggttctccggctattgtcgaaatgcaagcacgcgtttcacgtggagtgtgtggactcgtggttggacgtgcattctatgtgtcctctctgctgctattgcatggatccagaggacattttcttggtagaggaagcaaagcctttccaccaaagtcatcaacaacagaacaacgatcagggacgcgtgtgtttgaatctggacctggagaagcaggggatagtaaagtctcgacagaggcatttgttcgttcggggtgggggaaggagaaacaacagaggagtagcaacagagtcggaggtggacgacgtcatttag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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