GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-18 15:04:06, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NR_035777                 63 bp    RNA     linear   PRI 10-MAY-2023
DEFINITION  Pan troglodytes microRNA mir-375 (MIR375), microRNA.
ACCESSION   NR_035777
VERSION     NR_035777.1
KEYWORDS    RefSeq.
SOURCE      Pan troglodytes (chimpanzee)
  ORGANISM  Pan troglodytes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pan.
REFERENCE   1  (bases 1 to 63)
  AUTHORS   Baev V, Daskalova E and Minkov I.
  TITLE     Computational identification of novel microRNA homologs in the
            chimpanzee genome
  JOURNAL   Comput Biol Chem 33 (1), 62-70 (2009)
   PUBMED   18760970
REFERENCE   2  (bases 1 to 63)
  AUTHORS   Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright
            AJ.
  TITLE     miRBase: microRNA sequences, targets and gene nomenclature
  JOURNAL   Nucleic Acids Res 34 (Database issue), D140-D144 (2006)
   PUBMED   16381832
COMMENT     PROVISIONAL REFSEQ: This record is based on preliminary annotation
            provided by NCBI staff in collaboration with miRBase. The reference
            sequence was derived from JAQQLN010000048.1.
            
            Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs
            that are involved in post-transcriptional regulation of gene
            expression in multicellular organisms by affecting both the
            stability and translation of mRNAs. miRNAs are transcribed by RNA
            polymerase II as part of capped and polyadenylated primary
            transcripts (pri-miRNAs) that can be either protein-coding or
            non-coding. The primary transcript is cleaved by the Drosha
            ribonuclease III enzyme to produce an approximately 70-nt stem-loop
            precursor miRNA (pre-miRNA), which is further cleaved by the
            cytoplasmic Dicer ribonuclease to generate the mature miRNA and
            antisense miRNA star (miRNA*) products. The mature miRNA is
            incorporated into a RNA-induced silencing complex (RISC), which
            recognizes target mRNAs through imperfect base pairing with the
            miRNA and most commonly results in translational inhibition or
            destabilization of the target mRNA. The RefSeq represents the
            predicted microRNA stem-loop. [provided by RefSeq, Sep 2009].
            
            Sequence Note: This record represents a predicted microRNA
            stem-loop as defined by miRBase. Some sequence at the 5' and 3'
            ends may not be included in the intermediate precursor miRNA
            produced by Drosha cleavage.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                JAQQLN010000048.1  16038825-16038887   c
FEATURES             Location/Qualifiers
     source          1..63
                     /organism="Pan troglodytes"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9598"
                     /chromosome="2B"
                     /map="2B"
     gene            1..63
                     /gene="MIR375"
                     /gene_synonym="ptr-mir-375"
                     /note="microRNA mir-375"
                     /db_xref="GeneID:100316383"
                     /db_xref="miRBase:MI0008645"
     precursor_RNA   1..63
                     /gene="MIR375"
                     /gene_synonym="ptr-mir-375"
                     /product="microRNA mir-375"
                     /db_xref="GeneID:100316383"
                     /db_xref="miRBase:MI0008645"
     exon            1..63
                     /gene="MIR375"
                     /gene_synonym="ptr-mir-375"
                     /inference="alignment:Splign:2.1.0"
     ncRNA           40..61
                     /ncRNA_class="miRNA"
                     /gene="MIR375"
                     /gene_synonym="ptr-mir-375"
                     /product="ptr-miR-375"
                     /db_xref="miRBase:MIMAT0008125"
                     /db_xref="GeneID:100316383"
                     /db_xref="miRBase:MI0008645"
ORIGIN      
ccccgcgacgagcccctcgcacaaaccggacctgagcgttttgttcgttcggctcgcgtgagg
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]