2024-05-18 15:31:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_057684855 531 bp mRNA linear PLN 27-JUN-2023 DEFINITION PREDICTED: Amaranthus tricolor stigma-specific STIG1-like protein 4 (LOC130818696), mRNA. ACCESSION XM_057684855 VERSION XM_057684855.1 DBLINK BioProject: PRJNA986068 KEYWORDS RefSeq; includes ab initio. SOURCE Amaranthus tricolor ORGANISM Amaranthus tricolor Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_080053) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_026212465.1-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/23/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..531 /organism="Amaranthus tricolor" /mol_type="mRNA" /cultivar="Red" /isolate="AtriRed21" /db_xref="taxon:29722" /chromosome="7" /tissue_type="leaf" /country="China: Shenzhen" gene 1..531 /gene="LOC130818696" /note="stigma-specific STIG1-like protein 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:130818696" CDS 1..531 /gene="LOC130818696" /codon_start=1 /product="stigma-specific STIG1-like protein 4" /protein_id="XP_057540838.1" /db_xref="GeneID:130818696" /translation="
MKQIACTIYLFLVTIIAQVDAEFNSIESGLNITKNSTSSPWLKRVFNPRAQAQGCWNRPWICSFGQVPPRRLCCMNRCVEIISDPLNCGFCGIRCPFTWQCCNGLCMNVNINPFHCGKCWNRCAIGRPCVFGLCGYAQPFPPFPFPPTLPGPPFPFPFPLPSPPGSPTTQKKLKKE"
misc_feature 70..411 /gene="LOC130818696" /note="Stigma-specific protein, Stig1; Region: Stig1; pfam04885" /db_xref="CDD:428174" ORIGIN
atgaagcagatagcttgtactatttatctatttttagtaacaataatagcacaagtagatgcagaatttaatagtattgaatcaggtttaaacattaccaaaaactctacgtcttctccatggcttaaacgggtttttaacccacgagctcaagcgcaaggatgttggaataggccttggatttgttcgttcgggcaagttcctcctcgaagattatgttgtatgaatcgttgtgttgagatcatatcggatcctctaaattgcggtttttgtggcataagatgcccatttacatggcaatgttgtaatggtttatgtatgaatgtaaacattaatccttttcattgtggtaaatgttggaataggtgtgcaataggaagaccatgtgtttttgggttgtgtggttatgctcaaccctttcctccatttcctttcccaccaactttgcctggcccacctttccctttccctttcccattaccttcccctcctggatctccaactactcaaaaaaaattgaagaaggaatga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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