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2024-05-04 09:38:06, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Cryptomeria japonica leucine-rich repeat extensin-like protein 3 (LOC131078576), mRNA. (992 bp)
db_xref="GeneID:131078576" CDS 102..689 /gene="LOC131078576" /codon_start=1 /product="leucine-rich repeat extensin-like protein 3" /protein_id="XP_057872293.2" /db_xref="GeneID:131078576" /translation="MGGGSPTPSEDIIDMVLDDCEFQCEFRPLIRSMPGMRRPLLLSHPHSPPRYYPHIPPPHCHNRHPIAAPPPPPPPHCHNHHPPTPPPPPPPPRHNHHPPAHPPPPPPPRHNHHPPAHPPPPPPPRHNHHPPAPPPPPPPPHHNYHPPAPPPPHHQMKQKHCGHCCLNAHHNNFAHPMPMTMAVPAPSPYH" polyA_site 992 /gene="LOC131078576" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 96
XM_058016310.2 - Cryptomeria japonica (Japanese cedar) - NCBI
PREDICTED: Procambarus clarkii proline-rich extensin-like protein EPR1 (LOC123754574), mRNA. (324 bp)
prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:123754574" CDS 1..324 /gene="LOC123754574" /codon_start=1 /product="proline-rich extensin-like protein EPR1" /protein_id="XP_045593002.1" /db_xref="GeneID:123754574" /translation="MTWVEAANVSTESPPPRHNHRLPDTITASPTQSPPPRHNHHLPNTITASPTQSPPAQYNHHLPNTITHLPDTITASPIQLPPPRPNHRLPDTITTSPIQSPPPYSLH" ORIGIN //...
AA_position 15
XM_045737046.1 - Procambarus clarkii (red swamp crayfish) - NCBI
PREDICTED: Talpa occidentalis uncharacterized LOC129144671 (LOC129144671), partial mRNA. (817 bp)
CDS 1..>817 /gene="LOC129144671" /codon_start=1 /product="uncharacterized protein LOC129144671" /protein_id="XP_054543788.1" /db_xref="GeneID:129144671" /translation="MDDLEVKISMLNLESQGPAESWRRAKSLEAKRATRGPPVCFCTNPGNLTPPSGSCYPQPQQPQLQSDSWMHNNLPYATEKKKKDEKKGRNYLKTLERSGLVVRTQQEAKQITKNEPQKSDEDFDSGHRPPRHNSQMKGRKKLQWQWLANAPKAMVPKSMRTQQEAKQITKNEPQKSDEDFDSGHRPPRHNSQMKGRKKLQWQWLANAPKAMVPKSMRTQQEAKQITKNEPQKSDEDFDSGHRPPRHNSQMKGRKKLQWQWLANAPKAMVPKS" ORIGIN //...
AA_position 129
XM_054687813.1 - Talpa occidentalis (Iberian mole) - NCBI
Opisthorchis viverrini hypothetical protein partial mRNA. (204 bp)
collection_date="Jan-2010" gene 1..>204 /locus_tag="T265_08436" /db_xref="GeneID:20322615" CDS 1..204 /locus_tag="T265_08436" /codon_start=1 /product="hypothetical protein" /protein_id="XP_009172501.1" /db_xref="GeneID:20322615" /translation="MTACGVAKCAVDRQMGISDFTEYRLGSDVWNLGRACQPTVSEIFKSKVDLNPSSPPRHNSRDLKLPH" ORIGIN // REFERENCE 1 (bases 1 to 204) AUTHORS Young,N.D., Nagarajan,N., Lin,S.J., Korhonen,P.K., Jex,A.R., Hall,R.S., Safavi-Hemami,H., Kaewkong,W., Bertrand,D., Gao,S., Seet,Q., Wongkham,S., Teh,B.T., Wongkham,C., Intapan,P.M., Maleewong,W., Yang,X., Hu,M., Wang,Z., Hofmann,A.,...
AA_position 55
XM_009174237.1 - Opisthorchis viverrini - NCBI
Opisthorchis viverrini hypothetical protein partial mRNA. (204 bp)
collection_date="Jan-2010" gene 1..>204 /locus_tag="T265_08435" /db_xref="GeneID:20322614" CDS 1..204 /locus_tag="T265_08435" /codon_start=1 /product="hypothetical protein" /protein_id="XP_009172500.1" /db_xref="GeneID:20322614" /translation="MTACGVAKCAVDRQMGISDFTEYRLGSDVWNLGRACQPTVSEIFKSKVDLNPSSPPRHNSRDLKLPH" ORIGIN // REFERENCE 1 (bases 1 to 204) AUTHORS Young,N.D., Nagarajan,N., Lin,S.J., Korhonen,P.K., Jex,A.R., Hall,R.S., Safavi-Hemami,H., Kaewkong,W., Bertrand,D., Gao,S., Seet,Q., Wongkham,S., Teh,B.T., Wongkham,C., Intapan,P.M., Maleewong,W., Yang,X., Hu,M., Wang,Z., Hofmann,A.,...
AA_position 55
XM_009174236.1 - Opisthorchis viverrini - NCBI
PREDICTED: Camelina sativa root meristem growth factor 5 (LOC104761143), mRNA. (974 bp)
for all annotated introns" /db_xref="GeneID:104761143" CDS 405..647 /gene="LOC104761143" /codon_start=1 /product="root meristem growth factor 5" /protein_id="XP_010482480.1" /db_xref="GeneID:104761143" /translation="MSSIAASILLLFLLLHLSDSRHLDNVHITAKDQNVVSGLTPKEPVEVSRFVPRAVKHRRHRSPLLFADYPKPSTRPPRHN" ORIGIN //...
AA_position 76
XM_010484178.2 - Camelina sativa (false flax) - NCBI
PREDICTED: Capsella rubella root meristem growth factor 5 (LOC17874702), mRNA. (1092 bp)
support for all annotated introns" /db_xref="GeneID:17874702" CDS 670..915 /gene="LOC17874702" /codon_start=1 /product="root meristem growth factor 5" /protein_id="XP_006281400.1" /db_xref="GeneID:17874702" /translation="MSSIHAASILLLFLLLHLSDSRHLDNVHITAKDQNVVSGLTPKEPVKVSRFVPRAVKHRHHRPPLFFADYPKPSTRPPRHN" ORIGIN //...
AA_position 77
XM_006281338.2 - Capsella rubella - NCBI
PREDICTED: Arabidopsis lyrata subsp. lyrata root meristem growth factor 5 (LOC9300188), mRNA. (1094 bp)
for all annotated introns" /db_xref="GeneID:9300188" CDS 663..926 /gene="LOC9300188" /codon_start=1 /product="root meristem growth factor 5" /protein_id="XP_020867651.1" /db_xref="GeneID:9300188" /translation="MSSIHVASFLLLFLLLHLADSRHLDNVHITESRFSLVKDQNVVSGSTSKEPVKVSRFVPGAVKHHHRRSPLLFADYPKPSTRPPRHN" ORIGIN //...
AA_position 83
XM_021011992.1 - Arabidopsis lyrata subsp. lyrata - NCBI
PREDICTED: Raphanus sativus protein GOLVEN 10-like (LOC108846969), mRNA. (456 bp)
similarity to: 2 Proteins" /db_xref="GeneID:108846969" CDS 73..339 /gene="LOC108846969" /codon_start=1 /product="protein GOLVEN 10-like" /protein_id="XP_056851073.1" /db_xref="GeneID:108846969" /translation="MSSVHAVSVLLLFLLFLHLSDSRHLDNVHITDSQFSLDKDQNGVPGLTSKEPVRVSRIVLGVKKNHHRRQSLLFADYPKPSTRPPRHN" ORIGIN //...
AA_position 84
XM_056995093.1 - Raphanus sativus (radish) - NCBI
PREDICTED: Raphanus sativus protein GOLVEN 10 (LOC108846968), mRNA. (515 bp)
includes similarity to: 2 Proteins" /db_xref="GeneID:108846968" CDS 73..339 /gene="LOC108846968" /codon_start=1 /product="protein GOLVEN 10" /protein_id="XP_018475644.1" /db_xref="GeneID:108846968" /translation="MSSVHAVSVLLLFLLFLHLSDSRHLDNVHITDSQFSLDKDQNGVPGLTSKEPVRVSRIVLGVKKNHHRRQSLLFADYPKPSTRPPRHN" ORIGIN //...
AA_position 84
XM_018620142.2 - Raphanus sativus (radish) - NCBI
PREDICTED: Talpa occidentalis uncharacterized LOC119232347 (LOC119232347), mRNA. (1319 bp)
analysis using gene prediction method: Gnomon." /db_xref="GeneID:119232347" CDS 131..1177 /gene="LOC119232347" /codon_start=1 /product="uncharacterized protein LOC119232347" /protein_id="XP_054545311.1" /db_xref="GeneID:119232347" /translation="MKGRKKLQWQWLANAPKAMVPKSMRTQQEAKQIMKNEPQKSDEDFDSGHRPPRHNSQMKGRKKLQWQWLANAPKAMVPKSRSCYPQPQQPQLQSDSWMHNNLPYATEKKKKDEKKGRNYLKTLERSGLVVRTQQEAKQITKNEPQKSDEDFDSGHRPPRHNSQMKGRKKLQWQWLANAPKAMVPKSRSYNPQPQLPLLQSDSWMHNNLPYATGSCSPQALQPQLQSYSWIQNNSPYGTGDLRPAPALDPPAPPGTPRMTHFVDQYRVQLVDRVTSVDPILDRLLGQVLSYEQYETIRAEAIPQGQMRKLFSLLRSWNRAGKDLLYQALKDTQPYLIMDLLEKGHSRGH" misc_...
AA_position 51
XM_054689336.1 - Talpa occidentalis (Iberian mole) - NCBI
PREDICTED: Eutrema salsugineum root meristem growth factor 5 (LOC18016732), mRNA. (267 bp)
similarity to: 3 Proteins" /db_xref="GeneID:18016732" CDS 1..267 /gene="LOC18016732" /codon_start=1 /product="root meristem growth factor 5" /protein_id="XP_006401975.1" /db_xref="GeneID:18016732" /translation="MSSAHAALILLLFLLLHLSDSRHLNNVHIKDSRFSLDKDQNVISSGLTSKEPVRVSRFVPGAVKNRHHRPPLFFADYPKPSTRPPRHN" ORIGIN // atgagctcagcccatgctgctttgattcttctcttgtttctgctcttgcatctttcggattctcgtcacctcaacaatgttcacatcaaagattctcggttttcgcttgacaaggatcaaaatgttatctcctccggtttgacatctaaagaaccggttagagtttctcggtttgttccgggtgcagtgaagaaccgccaccatcggccaccactgttctttgcagattatccgaagccatccactcggccaccacgtcataactga
AA_position 84
XM_006401912.1 - Eutrema salsugineum - NCBI
Caenorhabditis remanei uncharacterized protein (GCK72_019924), partial mRNA. (249 bp)
stage" /country="Canada: Toronto" gene 249 /locus_tag="GCK72_019924" /db_xref="GeneID:78776860" CDS 1..249 /locus_tag="GCK72_019924" /codon_start=1 /product="hypothetical protein" /protein_id="XP_053582206.1" /db_xref="GeneID:78776860" /translation="MKVTTAIAEIVSEFSGFQHLRTSKSTTSLSSMTSSVSRKASTSSEPPRHNLNIPVGVAPITKSNSSQSLQRNNSSISYLVVE" ORIGIN // REFERENCE 1 (bases 1 to 249) AUTHORS Teterina,A.A., Willis,J.H. and Phillips,P.C. TITLE Chromosome-level assembly of the Caenorhabditis remanei genome JOURNAL Unpublished REFERENCE 2 (bases 1 to 249) CONSRTM NCBI Genome Project TITLE Direct Submission...
AA_position 46
XM_053733293.1 - Caenorhabditis remanei - NCBI
PREDICTED: Brassica napus protein GOLVEN 10 (LOC106387923), mRNA. (2960 bp)
feature by RNAseq alignments" /db_xref="GeneID:106387923" CDS 2490..2753 /gene="LOC106387923" /codon_start=1 /product="protein GOLVEN 10" /protein_id="XP_013683318.1" /db_xref="GeneID:106387923" /translation="MSSVHAVSVLLLFLLLHLSDSRHLDNVHITGSRFSLDKDQNVVPGLTSKEPVRVSRFVPGVKKNRHHRPPLLFADYPKPSTRPPRHN" ORIGIN //...
AA_position 83
XM_013827864.2 - Brassica napus (rape) - NCBI
PREDICTED: Brassica napus protein GOLVEN 10 (LOC106352503), mRNA. (2843 bp)
support for all annotated introns" /db_xref="GeneID:106352503" CDS 1913..2176 /gene="LOC106352503" /codon_start=1 /product="protein GOLVEN 10" /protein_id="XP_013647579.1" /db_xref="GeneID:106352503" /translation="MSSVHAVSVLLLFLLLHLSNSRHLDNVHITDSQISLDKDQNVVPGLTSKEPVRVSRFVPGVKKNRHHRPPLLFADYPKPSTRPPRHN" ORIGIN //...
AA_position 83
XM_013792125.3 - Brassica napus (rape) - NCBI
PREDICTED: Brassica oleracea var. oleracea root meristem growth factor 5 (LOC106334371), mRNA. (264 bp)
for all annotated introns" /db_xref="GeneID:106334371" CDS 1..264 /gene="LOC106334371" /codon_start=1 /product="root meristem growth factor 5" /protein_id="XP_013628117.1" /db_xref="GeneID:106334371" /translation="MSSVHAVSVLLLFLLLHLSDSRHLDNVHITDSRFSLDKDQNVVPGLTSKEPVRVSRFVPGVKKNRHHRPPLLFADYPKPSTRPPRHN" ORIGIN // atgagctcagttcatgctgtttcagtccttctcttgtttctgctcttgcatctctctgattctcgtcacctcgacaacgttcacatcacagattctcggttttcacttgacaaggatcaaaatgttgtccccggtttgacatctaaagaaccggttagagtatctcggtttgtgcctggcgtaaagaagaaccgccatcaccggccgccgctcttatttgcagattacccgaagccgtccactcggcctccacgccataactga
AA_position 83
XM_013772663.1 - Brassica oleracea var. oleracea - NCBI
Arabidopsis thaliana root meristem growth factor (RGF5), mRNA. (549 bp)
." /codon_start=1 /product="root meristem growth factor" /protein_id="NP_001119414.1" /db_xref="GeneID:6241076" /db_xref="TAIR:AT5G51451" /db_xref="Araport:AT5G51451" /translation="MSSIHVASMILLLFLFLHHSDSRHLDNVHITASRFSLVKDQNVVSSSTSKEPVKVSRFVPGPLKHHHRRPPLLFADYPKPSTRPPRHN" ORIGIN // REFERENCE 1 (bases 1 to 549) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,...
AA_position 84
Synonym: CLE-like7; CLEL7; GLV10; GOLVEN 10; root meristem growth factor 5
NM_001125942.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
PREDICTED: Brassica rapa root meristem growth factor 5 (LOC103857188), mRNA. (782 bp)
all annotated introns" /db_xref="GeneID:103857188" CDS 183..446 /gene="LOC103857188" /codon_start=1 /product="root meristem growth factor 5" /protein_id="XP_009132611.1" /db_xref="GeneID:103857188" /translation="MSSVHAVSVLLLFLLLHLSNSRHLDNVHITDSQISLDKDQNVVPGLTSKEPVRVSRFVPGVKKNRHHRPPLLFADYPKPSTRPPRHN" ORIGIN //...
AA_position 83
XM_009134363.2 - Brassica rapa (field mustard) - NCBI
PREDICTED: Tachysurus fulvidraco histone H2B-like (LOC113650569), mRNA. (823 bp)
genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns" /db_xref="GeneID:113650569" CDS 311..586 /gene="LOC113650569" /codon_start=1 /product="histone H2B-like" /protein_id="XP_047657503.1" /db_xref="GeneID:113650569" /translation="MGITDSFVDDIVERIALESSCPPRHNNPATYKDIQTAVRLLLLGELRVALAAQQQEPLPQNFTSSAPLAADCSRTQPLNMNRYATKNTVAE" misc_feature <311..448 /gene="LOC113650569" /note="Histone H2B; Region: H2B; cl23830" /db_xref="CDD:355063" ORIGIN //...
AA_position 22
XM_047801547.1 - Tachysurus fulvidraco (yellow catfish) - NCBI
PREDICTED: Tachysurus fulvidraco histone H2B-like (LOC113653819), transcript variant X3, mRNA. (706 bp)
by RNAseq alignments, including 20 samples with support for all annotated introns" /db_xref="GeneID:113653819" CDS 186..461 /gene="LOC113653819" /codon_start=1 /product="histone H2B-like isoform X2" /protein_id="XP_047657439.1" /db_xref="GeneID:113653819" /translation="MGITDSFVDDIVERIALESSCPPRHNNPATYKDIQTAVRLLLLGELRVALAAQQQEPLPQNFTSSAPLAADCSRTQPLKMNRYATKNTVAE" misc_feature <186..323 /gene="LOC113653819" /note="Histone H2B; Region: H2B; cl23830" /db_xref="CDD:355063" ORIGIN //...
AA_position 22
XM_047801483.1 - Tachysurus fulvidraco (yellow catfish) - NCBI
PREDICTED: Tachysurus fulvidraco histone H2B-like (LOC113653819), transcript variant X2, mRNA. (738 bp)
by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:113653819" CDS 186..461 /gene="LOC113653819" /codon_start=1 /product="histone H2B-like isoform X1" /protein_id="XP_047657415.1" /db_xref="GeneID:113653819" /translation="MGITDSFVDDIVERIALESSCPPRHNNPATYKDIQTAVRLLLLGELRVALAAQQQEPLPQNFTSSAPLAADCSRTQPLIMNRYATKNTVAE" misc_feature <186..323 /gene="LOC113653819" /note="Histone H2B; Region: H2B; cl23830" /db_xref="CDD:355063" ORIGIN //...
AA_position 22
XM_047801459.1 - Tachysurus fulvidraco (yellow catfish) - NCBI
PREDICTED: Tachysurus fulvidraco histone H2B-like (LOC113653819), transcript variant X1, mRNA. (693 bp)
by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:113653819" CDS 186..461 /gene="LOC113653819" /codon_start=1 /product="histone H2B-like isoform X1" /protein_id="XP_047657373.1" /db_xref="GeneID:113653819" /translation="MGITDSFVDDIVERIALESSCPPRHNNPATYKDIQTAVRLLLLGELRVALAAQQQEPLPQNFTSSAPLAADCSRTQPLIMNRYATKNTVAE" misc_feature <186..323 /gene="LOC113653819" /note="Histone H2B; Region: H2B; cl23830" /db_xref="CDD:355063" ORIGIN //...
AA_position 22
XM_047801417.1 - Tachysurus fulvidraco (yellow catfish) - NCBI
PREDICTED: Neocloeon triangulifer uncharacterized LOC132201160 (LOC132201160), mRNA. (586 bp)
analysis using gene prediction method: Gnomon." /db_xref="GeneID:132201160" CDS 238..540 /gene="LOC132201160" /codon_start=1 /product="uncharacterized protein LOC132201160" /protein_id="XP_059483086.1" /db_xref="GeneID:132201160" /translation="MHFDWKKSFKLHEPFSGPNRNPLGGGVGEDGASGCPWSTFGQRPGRYKSSTDPPRHNCRNQRERFEDRKTNPIITLLKTSQCMTFNKNCQRPRRLSDSTH" ORIGIN //...
AA_position 53
XM_059627103.1 - Neocloeon triangulifer - NCBI
PREDICTED: Drosophila erecta growth/differentiation factor 3 (LOC6555854), transcript variant X2, mRNA. (1100 bp)
including 2 samples with support for all annotated introns" /db_xref="GeneID:6555854" CDS 700..1002 /gene="LOC6555854" /codon_start=1 /product="growth/differentiation factor 3 isoform X2" /protein_id="XP_026839010.1" /db_xref="GeneID:6555854" /translation="MIAPGERISGATTVTNYTNDPKVFDAGYCHGRCPPRHNPAHHHALLQSLIWQEDHNRAPRPCCAPSKLEMLEILHVDEDHSDKLKISTWSDMQVVECACS" misc_feature <760..996 /gene="LOC6555854" /note="transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily; Region: TGF_beta_SF; cl40434" /db_xref="CDD:394804" misc_feature order...
AA_position 34
XM_026983209.1 - Drosophila erecta - NCBI
Letharia columbiana uncharacterized protein (HO173_012310), partial mRNA. (279 bp)
USA: Cheney, WA" /lat_lon="47.4797 N 117.5607 W" /collection_date="2018" gene 279 /locus_tag="HO173_012310" /db_xref="GeneID:59293946" CDS 1..279 /locus_tag="HO173_012310" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_037158957.1" /db_xref="GeneID:59293946" /translation="MPPPRHNVTGFDPRKFVQSSGMPAKDPWARAEQWRYTGPFTRYNRFKGALPGLGTATVAFGAYCTYEYFFMKDEHHGHGEGHGEGHGSEEHH" misc_feature 73..219 /locus_tag="HO173_012310" /note="NADH-ubiquinone oxidoreductase B12 subunit family; Region: NDUF_B12; pfam08122" /db_xref="CDD:429829" ORIGIN // REFERENCE 1 (bases 1 to 279) AUTHORS McKenzie,S....
AA_position 3
XM_037314182.1 - Letharia columbiana - NCBI
PREDICTED: Solanum dulcamara uncharacterized LOC129871480 (LOC129871480), mRNA. (539 bp)
Gnomon." /db_xref="GeneID:129871480" CDS 41..352 /gene="LOC129871480" /codon_start=1 /product="uncharacterized protein LOC129871480" /protein_id="XP_055802375.1" /db_xref="GeneID:129871480" /translation="MMLPTRILSILIAQILPNTTSYQCGKIATKRCNSAPKRESLANTGEEHEAVVIRGNKRKGEQILSRRPLSQSGGKGSAEFVAFTADYKSPRHHPPRHN" ORIGIN //...
AA_position 99
XM_055946400.1 - Solanum dulcamara - NCBI
PREDICTED: Physcomitrella patens uncharacterized LOC112286762 (LOC112286762), mRNA. (1702 bp)
all annotated introns" /db_xref="GeneID:112286762" CDS 232..543 /gene="LOC112286762" /codon_start=1 /product="uncharacterized protein LOC112286762" /protein_id="XP_024384776.1" /db_xref="GeneID:112286762" /translation="MGDLNSIFDCNRFPPISREDLPSDKVNWRFRLQKFIDMGGLQRDLDMVSARWPDEYLSEPKVDNDRDDISVIVITGYPPRHNYDVQRVLNLVYKHDPTATLVI" ORIGIN //...
AA_position 78
XM_024529008.1 - Physcomitrium patens - NCBI
Lentinula edodes uncharacterized protein (C8R40DRAFT_766666), mRNA. (535 bp)
Unknown" /country="Russia: Primorsky" gene 1..535 /locus_tag="C8R40DRAFT_7" /db_xref="GeneID:70266521" CDS 152..445 /locus_tag="C8R40DRAFT_7" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_046089557.1" /db_xref="GeneID:70266521" /db_xref="JGIDB:Lenedo1_7" /translation="MHRICVCMPPRHNFPTLVLCLVLTGNVHDGFSLETRMKTQCCQIFGKEKDMYADGLIYVFVSGNFKIACHLCWLSTAGFGLQHEPVYAKLPSIPLKL" ORIGIN // REFERENCE 1 (bases 1 to 535) AUTHORS Zhang,J., Shen,N., Li,C., Xiang,X., Liu,G., Gui,Y., Patev,S., Hibbett,D.S., Barry,K., Andreopoulos,W., Lipzen,A., Riley,R., He,G., Yan,M., Grigoriev,I.V., Shan Kwan,...
AA_position 9
XM_046236154.1 - Lentinula edodes (shiitake mushroom) - NCBI
PREDICTED: Tarenaya hassleriana root meristem growth factor 1 (LOC104801001), mRNA. (330 bp)
db_xref="GeneID:104801001" CDS 1..330 /gene="LOC104801001" /codon_start=1 /product="root meristem growth factor 1" /protein_id="XP_010522361.1" /db_xref="GeneID:104801001" /translation="MVSIRVSCSLLILLILQLHAHVSNSKEILPQATKGGELQSVTSTINPNEKNVGNGMRNRKMLKGEKKDVEAETTEELVRGEERNEENELKTASLTADYSDPLHHPPRHN" ORIGIN //...
AA_position 105
XM_010524059.1 - Tarenaya hassleriana - NCBI
Salpingoeca rosetta uncharacterized protein (PTSG_06483), partial mRNA. (300 bp)
chromosome="Unknown" gene 300 /locus_tag="PTSG_06483" /db_xref="GeneID:16072425" CDS 1..300 /locus_tag="PTSG_06483" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_004991865.1" /db_xref="GeneID:16072425" /translation="MHTLARGKHGAGYVLEEGITNNRRTETATSTAAARALRPTNAEAETPLSPTAQTTEVPPRHNEKLGRNHTRWMSKEVMVVVGVSKPQTLDRSYIRLHDN" ORIGIN // REFERENCE 1 (bases 1 to 300) AUTHORS Russ,C., Cuomo,C., Burger,G., Gray,M.W., Holland,P.W.H., King,N., Lang,F.B.F., Roger,A.J., Ruiz-Trillo,I., Young,S.K., Zeng,Q., Gargeya,S., Alvarado,L., Berlin,A., Chapman,S.B., Chen,Z., Freedman,E., Gellesch,M.,...
AA_position 58
XM_004991808.1 - Salpingoeca rosetta - NCBI
Arabidopsis thaliana root meristem growth factor 1 (RGF1), mRNA. (575 bp)
." /codon_start=1 /product="root meristem growth factor 1" /protein_id="NP_001119468.1" /db_xref="GeneID:836202" /db_xref="TAIR:AT5G60810" /db_xref="Araport:AT5G60810" /translation="MYVNKFYHAYQNFYIAPQMKNSEGLGASNGTQIAKKHAEDVIENRKTLKHVNVKVEANEKNGLEIESKEMVKKRKNKKRLTKTESLTADYSNPGHHPPRHN" ORIGIN // REFERENCE 1 (bases 1 to 575) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C...
AA_position 97
Synonym: GLV11; GOLVEN 11; MAE1.14; MAE1_14; root meristem growth factor 1
NM_001125996.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
Suillus paluster uncharacterized protein (EDB91DRAFT_1154928), partial mRNA. (506 bp)
locus_tag="EDB91DRAFT_1154928" /note="expressed protein" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_041173391.1" /db_xref="GeneID:64613472" /db_xref="JGIDB:Suipal1_1154928" /translation="MQGSVTFKCLLHFGLANSASLQDMFGAPLDLVDQQDEQKTNASGVSQVQPRKCIRYLVNLKATYWMNENERDWLVRGTRIFTFFPFLPPRHN" ORIGIN // REFERENCE 1 (bases 1 to 506) AUTHORS Lofgren,L.A., Nguyen,N.H., Vilgalys,R., Ruytinx,J., Liao,H.L., Branco,S., Kuo,A., LaButti,K., Lipzen,A., Andreopoulos,W., Pangilinan,J., Riley,R., Hundley,H., Na,H., Barry,K., Grigoriev,I.V., Stajich,J.E. and Kennedy,P.G. TITLE Comparative genomics...
AA_position 88
XM_041319579.1 - Suillus paluster - NCBI
PREDICTED: Daphnia carinata uncharacterized LOC130689796 (LOC130689796), mRNA. (351 bp)
prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:130689796" CDS 16..348 /gene="LOC130689796" /codon_start=1 /product="uncharacterized protein LOC130689796" /protein_id="XP_057368719.1" /db_xref="GeneID:130689796" /translation="MDKILLILMLSIVVCNGRPPRHNQAEHITTTVNRRSTSVLRAIALYANPFGWIGTPSWPRRTTKANRKTKTNVSYLWVIEIDHSNHWWFTVYEKGSQIPGPDKKAIMKLF" polyA_site 351 /gene="LOC130689796" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 19
XM_057512736.2 - Daphnia carinata - NCBI
Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_213090), partial mRNA. (283 bp)
db_xref="GeneID:14915852" CDS 1..>283 /locus_tag="ACA1_213090" /note="encoded by transcript ACA1_213090A" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_004337045.1" /db_xref="GeneID:14915852" /translation="MALAIAVAALNRERAGAGVGEAEERRARALAAAMVAWAEGQAAQLMTTPATDDGREVGRPPRHNFCFKCGAALHSAATFCADCGVKLPREGDTE" ORIGIN // REFERENCE 1 (bases 1 to 283) AUTHORS Clarke,M., Lohan,A.J., Liu,B., Lagkouvardos,I., Roy,S., Zafar,N., Bertelli,C., Schilde,C., Kianianmomeni,A., Burglin,T.R., Frech,C., Turcotte,B., Kopec,K.O., Synnott,J.M., Choo,C., Paponov,I., Finkler,A., Soon Heng Tan,C., Hutchins...
AA_position 60
XM_004336997.1 - Acanthamoeba castellanii str. Neff - NCBI
PREDICTED: Camelina sativa root meristem growth factor 1 (LOC104729019), mRNA. (455 bp)
db_xref="GeneID:104729019" CDS 68..415 /gene="LOC104729019" /codon_start=1 /product="root meristem growth factor 1" /protein_id="XP_019087677.1" /db_xref="GeneID:104729019" /translation="MVSIRVFCYLLIFFVLQLHAKVSNAYINRQGIYLHTPLQTESTSIQIANKFAEDVVVNRKTLKHVNVKVEANEKKGLEIESKDTVRKRKNKKRLTKTASLTADYSNPGHHPPRHN" ORIGIN //...
AA_position 111
XM_019232132.1 - Camelina sativa (false flax) - NCBI
PREDICTED: Tarenaya hassleriana root meristem growth factor 5 (LOC104813250), mRNA. (354 bp)
xref="GeneID:104813250" CDS 1..354 /gene="LOC104813250" /codon_start=1 /product="root meristem growth factor 5" /protein_id="XP_010539119.1" /db_xref="GeneID:104813250" /translation="MSSVHAASFLVMFLFIHACDSRHVGIFDHVSIAGFRFQTQSKDLPKASSVRVTEKAGENHFKGSPVQDSIEEGSRIVQRKSMARVSQRVKHDHQPHPHPPEFYADYPKPSTRPPRHN" ORIGIN //...
AA_position 113
XM_010540817.1 - Tarenaya hassleriana - NCBI
PREDICTED: Pelodiscus sinensis chromosome unknown C16orf74 homolog (CUNH16orf74), mRNA. (2224 bp)
GeneID:106732983" CDS 151..489 /gene="CUNH16orf74" /codon_start=1 /product="uncharacterized protein C16orf74 homolog" /protein_id="XP_014436260.1" /db_xref="GeneID:106732983" /translation="MQIALAQLLPAARWGLRGKAELGGGTETGALPEQSRGADRRAGGFEDENMGLKISCLKGFKSCVTSGSSQAPIANGKHLRVPAIIITPPTPTGTMLTRDARRPGEEPPRHNC" misc_feature 337..>456 /gene="CUNH16orf74" /note="Domain of unknown function (DUF4597); Region: DUF4597; pfam15366" /db_xref="CDD:434668" ORIGIN //...
AA_position 107
XM_014580774.2 - Pelodiscus sinensis (Chinese soft-shelled turtle) - NCBI
Tuber melanosporum uncharacterized protein (GSTUM_00008473001), mRNA. (898 bp)
scaffold_47" gene 1..898 /locus_tag="GSTUM_00008473001" /db_xref="GeneID:9184655" CDS 173..499 /locus_tag="GSTUM_00008473001" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_002840106.1" /db_xref="GeneID:9184655" /db_xref="UniProtKB/TrEMBL:D5GIF4" /translation="MNPLYPALDYLPPRPPPRHNRTGVTINTYVTGRPAGGAGKDEATRGETKPGQAVSRQDYGRWAGQPEAKRHRGAVGARSRPQLKTKCGRHNTGSAAGRRHCNPLDEYV" ORIGIN // REFERENCE 1 AUTHORS Martin,F., Kohler,A., Murat,C., Balestrini,R., Coutinho,P.M., Jaillon,O., Montanini,B., Morin,E., Noel,B., Percudani,R., Porcel,B., Rubini,A., Amicucci,A., Amselem,J., Anthouard,V...
AA_position 16
XM_002840060.2 - Tuber melanosporum (Perigord truffle) - NCBI
PREDICTED: Sesamum indicum uncharacterized LOC105162278 (LOC105162278), mRNA. (735 bp)
the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:105162278" CDS 122..463 /gene="LOC105162278" /codon_start=1 /product="uncharacterized protein LOC105162278" /protein_id="XP_011078585.1" /db_xref="GeneID:105162278" /translation="MATGAAGDGFLRGVFEGCISAGDMGIQRRPYHKHCGCALHKSRRHCPHPPRHNTVSYPVRRSWSEGNLALIGQSSPPCSSSSPAVPEGIRRTSTQLVLYKEEDEELQGSSPKA" ORIGIN //...
AA_position 49
XM_011080283.2 - Sesamum indicum (sesame) - NCBI
PREDICTED: Gossypium arboreum uncharacterized LOC108485987 (LOC108485987), mRNA. (771 bp)
Derived by automated computational analysis using gene prediction method: Gnomon." /db_xref="GeneID:108485987" CDS 180..509 /gene="LOC108485987" /codon_start=1 /product="uncharacterized protein LOC108485987" /protein_id="XP_017645308.1" /db_xref="GeneID:108485987" /translation="MAYNNTREKRRALLLLRSPPRHNNTREKRRALLLLRSPPRPLAEPPGVQRPSNRRENTGAHPNSESEVSEAWRRWRVVGQNGARGGLADEERRLKTLAARVAAVFFVMG" polyA_site 771 /gene="LOC108485987" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 19
XM_017789819.2 - Gossypium arboreum - NCBI
PREDICTED: Raphanus sativus protein GOLVEN 11 (LOC108811133), mRNA. (351 bp)
Proteins" /db_xref="GeneID:108811133" CDS 1..351 /gene="LOC108811133" /codon_start=1 /product="protein GOLVEN 11" /protein_id="XP_018438682.1" /db_xref="GeneID:108811133" /translation="MVSMKALCYLLIFFILQLHAEVSHANFGRQVPQAAKNGGLGASTSTQTASKAIENVIGNRKALKYGNMKGEANEINSLAIESKETVRKRKSKKRLTKTVSLTADYSDPSHHPPRHN" ORIGIN //...
AA_position 112
XM_018583180.1 - Raphanus sativus (radish) - NCBI
PREDICTED: Raphanus sativus protein GOLVEN 11-like (LOC130500629), mRNA. (403 bp)
db_xref="GeneID:130500629" CDS 53..403 /gene="LOC130500629" /codon_start=1 /product="protein GOLVEN 11-like" /protein_id="XP_056851534.1" /db_xref="GeneID:130500629" /translation="MVSMRALCYLLVFFILQLHAEVSHANFGRQVPQAAKNGGLGASTSTQTASKAIENVIGNRKALKYGNMKGEANEINSLAIESKETVRKRKSKKRLTKTVSLTADYSDPGHHPPRHN" ORIGIN //...
AA_position 112
XM_056995554.1 - Raphanus sativus (radish) - NCBI
PREDICTED: Eutrema salsugineum root meristem growth factor 1 (LOC18013275), mRNA. (345 bp)
db_xref="GeneID:18013275" CDS 1..345 /gene="LOC18013275" /codon_start=1 /product="root meristem growth factor 1" /protein_id="XP_006395166.2" /db_xref="GeneID:18013275" /translation="MVALRAFCYLLIFFVLQFKVSNANLNKQAPLAANNGGLGAITSTPIDNKAIDNVSENRKTLKHGTVNVEANEKNGLEIQSKETVRKRKNMTRLTKTVSLTADYSALGHHPPRHN" ORIGIN //...
AA_position 110
XM_006395104.2 - Eutrema salsugineum - NCBI
PREDICTED: Camelina sativa root meristem growth factor 1-like (LOC104762190), mRNA. (704 bp)
CDS 163..525 /gene="LOC104762190" /codon_start=1 /product="root meristem growth factor 1-like" /protein_id="XP_019095828.1" /db_xref="GeneID:104762190" /translation="MHTLIAKVYIYIRVYIHYFISMYVSAALVYKRMLIKISLYIALQTESTSIQIANKLAEDEVENRKTLKHVNVKVEANEKNGLEIESKETVRKRKSKKTLTKTASLTADYSNPGHHPPRHN" ORIGIN //...
AA_position 116
XM_019240283.1 - Camelina sativa (false flax) - NCBI
PREDICTED: Capsella rubella root meristem growth factor 1 (LOC17877325), mRNA. (383 bp)
db_xref="GeneID:17877325" CDS 1..354 /gene="LOC17877325" /codon_start=1 /product="root meristem growth factor 1" /protein_id="XP_006281898.1" /db_xref="GeneID:17877325" /translation="MVSIRVFCYLLIFFVLQVQAKVSNANFNRRAQKSENSESLRASTSSTQIANKLAEDVIENRKTLKHVNVKVEANEKNGFVIESKETVRKRKSKKRLTKTASLTADYSNPGHHPPRHN" ORIGIN //...
AA_position 113
XM_006281836.2 - Capsella rubella - NCBI
PREDICTED: Eutrema salsugineum root meristem growth factor 1 (LOC18013236), mRNA. (357 bp)
db_xref="GeneID:18013236" CDS 1..357 /gene="LOC18013236" /codon_start=1 /product="root meristem growth factor 1" /protein_id="XP_024006816.1" /db_xref="GeneID:18013236" /translation="MVAMNMRVFCYLLIFFILQLYAKVSNANLNRQAPLTANNGGLGASTSTPIDNKAIDNVSENRKTLKHGTVNVEGNEKNGLEIESKETVRKEKNMTRLTKTVSLTADYSAPGHHPPRHN" ORIGIN //...
AA_position 114
XM_024151048.1 - Eutrema salsugineum - NCBI
Isaria fumosorosea ARSEF 2679 hypothetical protein (ISF_04617), partial mRNA. (360 bp)
country="Portugal: Azores" /collection_date="Oct-1988" gene 360 /locus_tag="ISF_04617" /db_xref="GeneID:30020909" CDS 1..360 /locus_tag="ISF_04617" /codon_start=1 /product="hypothetical protein" /protein_id="XP_018704557.1" /db_xref="GeneID:30020909" /translation="MGCRDLGIYQDPRYVPQGEPQWDRRGLKPVPPRHNEHHPVPRPTPNPAPVPAPVPAPVQAVPEMPVPGPRPHPHPQAAPKTAKAHRPHQLNLDAWKRGYCGKRPVVVLPPCGYGNWSRP" ORIGIN // REFERENCE 1 (bases 1 to 360) AUTHORS Shang,Y., Xiao,G., Zheng,P., Cen,K., Zhan,S. and Wang,C. TITLE Divergent and convergent evolution of fungal pathogenicity JOURNAL Genome Biol Evol (2016) In press...
AA_position 31
XM_018848223.1 - Cordyceps fumosorosea ARSEF 2679 - NCBI
PREDICTED: Fragaria vesca subsp. vesca uncharacterized LOC101314295 (LOC101314295), mRNA. (1038 bp)
by RNAseq alignments, including 81 samples with support for all annotated introns" /db_xref="GeneID:101314295" CDS 239..580 /gene="LOC101314295" /codon_start=1 /product="uncharacterized protein LOC101314295" /protein_id="XP_004303512.1" /db_xref="GeneID:101314295" /translation="MSRRNGGGPKLDLKLNLSPPRHNPMAESPGRSSTMSPTSPPSSCVSSELTQDDNNNMRYSNSPEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENNTTMKTRKS" ORIGIN //...
AA_position 19
XM_004303464.2 - Fragaria vesca subsp. vesca - NCBI
Arabidopsis thaliana root meristem growth factor 1 (RGF1), mRNA. (442 bp)
." /codon_start=1 /product="root meristem growth factor 1" /protein_id="NP_200889.2" /db_xref="GeneID:836202" /db_xref="TAIR:AT5G60810" /db_xref="Araport:AT5G60810" /translation="MVSIRVICYLLVFSVLQVHAKVSNANFNSQAPQMKNSEGLGASNGTQIAKKHAEDVIENRKTLKHVNVKVEANEKNGLEIESKEMVKKRKNKKRLTKTESLTADYSNPGHHPPRHN" ORIGIN // REFERENCE 1 (bases 1 to 442) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C...
AA_position 112
Synonym: GLV11; GOLVEN 11; MAE1.14; MAE1_14; root meristem growth factor 1
NM_125474.4 - Arabidopsis thaliana (thale cress) - NCBI - TAIR
PREDICTED: Brassica napus protein GOLVEN 11-like (LOC106436535), mRNA. (3303 bp)
db_xref="GeneID:106436535" CDS 1279..1629 /gene="LOC106436535" /codon_start=1 /product="protein GOLVEN 11-like" /protein_id="XP_013732952.2" /db_xref="GeneID:106436535" /translation="MVSMRAFCYLLIFFILLLHAKVSHAKFNREVPQAAKNGGLGASTSTQITSKAIENVMGNRKALKHGNMKGEANEMNSLAIESKETVRKRKSKKRLTKTVSLTADYSDPGHHPPRHN" ORIGIN //...
AA_position 112
XM_013877498.3 - Brassica napus (rape) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/aa%3aPPRHN
lang : en | div : | spe : | query_string : aa:PPRHN | format : html | download : 

0.000 | 0.000 | search_start;
0.087 | 0.087 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:PPRHN)?to=0&format=json
0.138 | 0.051 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:PPRHN)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.144 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]