2024-05-18 16:48:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_014580774 2224 bp mRNA linear VRT 04-JUN-2018 DEFINITION PREDICTED: Pelodiscus sinensis chromosome unknown C16orf74 homolog (CUNH16orf74), mRNA. ACCESSION XM_014580774 VERSION XM_014580774.2 DBLINK BioProject: PRJNA221645 KEYWORDS RefSeq. SOURCE Pelodiscus sinensis (Chinese soft-shelled turtle) ORGANISM Pelodiscus sinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005871002.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 4, 2018 this sequence version replaced XM_014580774.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pelodiscus sinensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2224 /organism="Pelodiscus sinensis" /mol_type="mRNA" /isolate="Daiwa-1" /db_xref="taxon:13735" /chromosome="Unknown" /sex="female" /country="Japan: Saga" gene 1..2224 /gene="CUNH16orf74" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns" /db_xref="GeneID:106732983" CDS 151..489 /gene="CUNH16orf74" /codon_start=1 /product="uncharacterized protein C16orf74 homolog" /protein_id="XP_014436260.1" /db_xref="GeneID:106732983" /translation="
MQIALAQLLPAARWGLRGKAELGGGTETGALPEQSRGADRRAGGFEDENMGLKISCLKGFKSCVTSGSSQAPIANGKHLRVPAIIITPPTPTGTMLTRDARRPGEEPPRHNC"
misc_feature 337..>456 /gene="CUNH16orf74" /note="Domain of unknown function (DUF4597); Region: DUF4597; pfam15366" /db_xref="CDD:434668" ORIGIN
ccctccctcccattagtggaagccacccgctgcgtccgtgccgccccccgctcggccgggcggagggaggcggcggcagagcccagctgtgacgggggggaccgtccccaccgcccctgctgactcgggaaggtgggaccaggcagggctatgcaaatcgccctcgcccagctgctgcctgcggctcgctgggggctgcgggggaaggcggagctgggcggagggaccgagaccggagcgctgccggagcaaagtcgaggagcagaccggcgtgctggggggtttgaggatgaaaacatgggacttaagatatcctgcctgaaaggctttaaatcgtgtgtgactagcgggagcagccaggcacccatagccaacggcaaacacctgagagtcccggccattatcatcacgcctcctacgcccacgggcaccatgctgaccagagacgccaggcggccaggggaagagccgccacgccacaactgctgagccagaggctacaagaacaggagccacgcagggcacgaggcacggccggggagcacctgaaggagctggcgctgtgtcgccggcaccgtgaccagcttgcaggggaacctctctgtgccatgtggttccccctcccgtgttcttgcttttcaccgggtttattacagatttattaatggagctgcaggctcctcgcgacgggggctgtcagagagttccaaactccagcaaaccgtggcctgttcagccattagccgggctgctcctctctgggagggagggaggagactgacagcgagggcggggaagacggctgggctgcagcgatttggctttcctggtgccaggctgtggcctccctttggccatttaagtcaccctaacagggcttgtctggggccgaagctaactcaaaagccaggtggagggtgcgttccctgtcctggtcaccgacagcctttccacggctcctgaatggactgggttctcctggagtcagcgaggcagcaggacgtgtcgcggcccgccccgctggaagccaatcggctcaagttttgcctgggtggggtgtcagtggggaaggcgctgaacactactactaaccacaggggacctctgtgttgcaagccataggccaggctcccgttgtaggcgaggagcgcgagctgggatggaaggggccgatccctgtcagcaagttggacatgcaaggtgccagctctctcctgatggccgggaggtgactgctacagggctcaccctggccagaccttcgcagagccccatgtgcatgggcagcaccagggaaacccacggctgacccagccaccacctgaatgccagttgtcactggccatcggccacatgagcctacacatgatgccagcgtcacaaacaatattttctgcaccaggctcatgctcttgcttttctgatgtaccagacgctgctggccaaaggtgggggaatcccagcttggtccggaggtgggaaggaagtctggatctagttgaactggggctgatgggagcctctgatgggaatacacgcctgccatcagtttctgcgtgtggcagcgttgcttccttgatcacttctttcagcgtgacctgagcgtgtgccttacgggcgtaggcaccaggagcccaaggaagagtccatctgagcatcatgtggcggggggagggctggaggttgcctagaggatttgggcgacaggcactcctccccatctggacctgttgcactttctttgctgctgcaagtggctagattgggatgctgtggtgtgtgcctgcagccatctccccggcatggaatcgctccgctcccagaaggcagcacgagccccaacgcagctaggtagccctgcgtggttggcttggatgtcgatgaagcctgcttatgcttaggcctttccttgccagcacgtggtggcacagcgtggggatggaagcaaatgtgaagagccatggcagagtcactgtgagctacggcagggagaacaacctgagaatgcaccaaccggacaacgggacagaggaggggtggggaccatctatcccagtctatgccacccatgcaggctggtctcgtgcccttgtgggtcctaatcatcccctgcgggtgaacaggcatgtttgcaagtggcctgtcttggcaatattttcaaaagggctcggagtgatttataaagcgttgcggttttgttacaaataaagatctctttgcccca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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