ver.2
Help
|
Advanced search
|
Japanese
Previous release (v1)
2025-04-19 17:02:59, GGRNA : RefSeq release 229 (Mar, 2025)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS NM_017339 1060 bp mRNA linear ROD 08-OCT-2024 DEFINITION Rattus norvegicus ISL LIM homeobox 1 (Isl1), mRNA. ACCESSION NM_017339 VERSION NM_017339.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from S69329.1. On Apr 28, 2006 this sequence...
LOCUS NM_023951 567 bp mRNA linear ROD 07-OCT-2024 DEFINITION Rattus norvegicus SEBOX homeobox (Sebox), mRNA. ACCESSION NM_023951 VERSION NM_023951.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF284338.1. ##Evidence-Data-START## RNAseq...
LOCUS NM_001024889 829 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus reproductive homeobox 4G (Rhox4g), mRNA. ACCESSION NM_001024889 XM_233314 VERSION NM_001024889.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058652.1. On Jun...
LOCUS NM_001025776 738 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus reproductive homeobox 8 (Rhox8), mRNA. ACCESSION NM_001025776 XM_578961 VERSION NM_001025776.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058655.1. On Jul 22, 2005...
LOCUS NM_001102413 2493 bp mRNA linear ROD 26-OCT-2024 DEFINITION Rattus norvegicus iroquois homeobox 6 (Irx6), transcript variant 1, mRNA. ACCESSION NM_001102413 XM_001064772 XM_226359 VERSION NM_001102413.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1224..1340 /gene="Irx6" /gene_synonym="RGD1564830" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 786..1034 /gene="Irx6" /gene_synonym="RGD1564830" /inference="alignment:...
LOCUS NM_001434430 2496 bp mRNA linear ROD 28-OCT-2024 DEFINITION Rattus norvegicus iroquois homeobox 6 (Irx6), transcript variant 2, mRNA. ACCESSION NM_001434430 XM_063278003 VERSION NM_001434430.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1224..1340 /gene="Irx6" /gene_synonym="RGD1564830" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 786..1034 /gene="Irx6" /gene_synonym="RGD1564830" /inference="alignment:...
LOCUS NM_001135607 908 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus reproductive homeobox on X chromosome 3 (Rhox3), mRNA. ACCESSION NM_001135607 VERSION NM_001135607.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058651.1. ##Evidence-...
LOCUS NM_152849 1785 bp mRNA linear ROD 04-OCT-2024 DEFINITION Rattus norvegicus homeobox and leucine zipper encoding (Homez), mRNA. ACCESSION NM_152849 VERSION NM_152849.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC084701.1. On Oct...
map="10q26" gene 1..1235 /gene="Hoxb7" /gene_synonym="Hox2r1b; R1b" /note="homeo box B7" /db_xref="GeneID:497985" /db_xref="RGD:1559918" exon 1..419 /gene="Hoxb7" /gene_synonym="Hox2r1b; R1b" /inference="alignment:Splign:2.1.0" CDS 20..679 /gene="Hoxb7" /gene_synonym="Hox2r1b; R1b" /note="homeobox gene B7; homeobox protein R1B" /codon_start=1 /product="homeobox protein Hox-B7" /protein_id="NP_001017480.1" /db_xref="GeneID:497985" /db_xref="RGD:1559918" /translation="...
LOCUS NM_001106302 1362 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus H6 family homeobox 3 (Hmx3), mRNA. ACCESSION NM_001106302 XM_001054019 XM_219327 VERSION NM_001106302.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
END## FEATURES Location/Qualifiers source 1..843 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="7" /map="7q36" gene 1..843 /gene="Hoxc12" /note="homeo box C12" /db_xref="GeneID:300262" /db_xref="RGD:1310539" CDS 1..843 /gene="Hoxc12" /codon_start=1 /product="homeobox protein Hox-C12" /protein_id="NP_001100266.1" /db_xref="GeneID:300262" /db_xref="RGD:1310539" /translation="...
LOCUS NM_001108880 1372 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus BARX homeobox 1 (Barx1), mRNA. ACCESSION NM_001108880 XM_001056986 XM_344575 VERSION NM_001108880.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473977.1....
LOCUS NM_001024901 772 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus Rhox homeobox family member 12 (Rhox12), mRNA. ACCESSION NM_001024901 XM_343757 VERSION NM_001024901.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
Splign:2.1.0" misc_feature 33..35 /gene="Hoxc5" /note="upstream in-frame stop codon" CDS 75..743 /gene="Hoxc5" /codon_start=1 /product="homeobox protein Hox-C5" /protein_id="NP_001101586.1" /db_xref="GeneID:315341" /db_xref="RGD:1307584" /translation="...inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2734) AUTHORS Moon SM, Ahn MY, Kwon SM, Kim SA, Ahn SG and Yoon JH. TITLE Homeobox C5 expression is associated with the progression of 4-nitroquinoline 1-oxide-induced rat tongue carcinogenesis JOURNAL J Oral Pathol Med...
LOCUS NM_001109244 816 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus ladybird homeobox 2 (Lbx2), mRNA. ACCESSION NM_001109244 XM_001072452 XM_575575 VERSION NM_001109244.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001012219 1907 bp mRNA linear ROD 04-FEB-2025 DEFINITION Rattus norvegicus LIM homeobox 8 (Lhx8), transcript variant 2, mRNA. ACCESSION NM_001012219 XM_345303 VERSION NM_001012219.3 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ012.1. On Dec...
LOCUS NM_001415091 1989 bp mRNA linear ROD 04-FEB-2025 DEFINITION Rattus norvegicus LIM homeobox 8 (Lhx8), transcript variant 1, mRNA. ACCESSION NM_001415091 XM_006233528 VERSION NM_001415091.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_001109166 2000 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus T-cell leukemia, homeobox 1 (Tlx1), mRNA. ACCESSION NM_001109166 XM_001057997 XM_574674 VERSION NM_001109166.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001127653 1468 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 6 (Nkx2-6), mRNA. ACCESSION NM_001127653 XM_001068954 XM_344429 VERSION NM_001127653.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC160896.1....
Dlx5" /note="homeobox Dlx5" /codon_start=1 /product="homeobox protein DLX-2" /protein_id="NP_001178675.1" /db_xref="GeneID:296499" /db_xref="RGD:1304853" /translation="MTGVFDSLVADMHSTQITASSTYHQHQQPPSGAGAGSGGSSNSSSSNSNLHKPQESPTLPVSTATDSSYYTNQQHPAASPYAHMGSYQYHASGLNNVSYSAKSSYDLGYTAAYTSYAPYGTSSSPVNNEPDKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPTEQHPGASASPPCASPPVSAPASWDFGAQQRMAGGGPGSGGSGAGSSGSSPSSAASAFLGNYPWYHQASGSASHLQATAPLLHPSQTPQAHHHHHHHHHAGGGAPVSAGTIF" misc_feature 511..756 /gene="Dlx2" /gene_synonym="DLX-5; Dlx5" /note="Homeobox protein distal-less-like...
LOCUS NM_001107594 1472 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 3 (Nkx2-3), mRNA. ACCESSION NM_001107594 XM_001056222 XM_219880 VERSION NM_001107594.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473986.1....
LOCUS NM_001100566 2339 bp mRNA linear ROD 18-FEB-2025 DEFINITION Rattus norvegicus orthodenticle homeobox 2 (Otx2), transcript variant 3, mRNA. ACCESSION NM_001100566 XM_001057814 XM_001073859 XM_224009 VERSION NM_001100566.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus...gene="Otx2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2339) AUTHORS Rohde,K., Hertz,H. and Rath,M.F. TITLE Homeobox genes in melatonin-producing pinealocytes: Otx2 and Crx act to promote hormone synthesis in the mature rat pineal gland JOURNAL J Pineal Res 66 (4),...
LOCUS NM_001109455 1881 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK6 homeobox 3 (Nkx6-3), mRNA. ACCESSION NM_001109455 XM_001062306 VERSION NM_001109455.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473970.2. On Oct...
LOCUS NM_001434615 4390 bp mRNA linear ROD 15-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 2, mRNA. ACCESSION NM_001434615 XM_063279041 VERSION NM_001434615.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota;...misc_feature 419..676 /gene="Pknox1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(956..970,974..976,1034..1036,1052..1054,1091..1093, 1097..1102,1109..1114,1118..1126) /gene="Pknox1" /note="DNA binding site...
LOCUS NM_001109106 1148 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus HESX homeobox 1 (Hesx1), mRNA. ACCESSION NM_001109106 XM_001057775 XM_573850 VERSION NM_001109106.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474067.2....
map="3q23" gene 1..1830 /gene="Hoxd1" /note="homeo box D1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" exon 1..756 /gene="Hoxd1" /inference="alignment:Splign:2.1.0" misc_feature 60..62 /gene="Hoxd1" /note="upstream in-frame stop codon" CDS 105..1091 /gene="Hoxd1" /codon_start=1 /product="homeobox protein Hox-D1" /protein_id="NP_001099354.1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" /translation="...
LOCUS NM_001434616 4636 bp mRNA linear ROD 15-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 3, mRNA. ACCESSION NM_001434616 XM_039098544 VERSION NM_001434616.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota;...misc_feature 662..919 /gene="Pknox1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1202..1216,1220..1222,1280..1282,1298..1300, 1337..1339,1343..1348,1355..1360,1364..1372) /gene="Pknox1" /note="DNA binding site...
LOCUS NM_001013074 4393 bp mRNA linear ROD 18-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 1, mRNA. ACCESSION NM_001013074 XM_039098545 XM_215364 VERSION NM_001013074.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM...misc_feature 419..676 /gene="Pknox1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(959..973,977..979,1037..1039,1055..1057,1094..1096, 1100..1105,1112..1117,1121..1129) /gene="Pknox1" /note="DNA binding site...
LOCUS NM_001109546 2814 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus visual system homeobox 1 (Vsx1), mRNA. ACCESSION NM_001109546 XM_001071714 VERSION NM_001109546.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474050.2. On...
LOCUS NM_001106732 1078 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 8 (Nkx2-8), mRNA. ACCESSION NM_001106732 XM_001079326 XM_234179 VERSION NM_001106732.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473947.1....
LOCUS NM_001415156 1165 bp mRNA linear ROD 12-NOV-2024 DEFINITION Rattus norvegicus paired related homeobox 2 (Prrx2), mRNA. ACCESSION NM_001415156 XM_039104087 VERSION NM_001415156.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ013.1....
LOCUS NM_001129878 2253 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus homeobox A11 (Hoxa11), mRNA. ACCESSION NM_001129878 XM_001059505 VERSION NM_001129878.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474011.2. On Jul...
misc_feature 391..507 /gene="Irx5" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <667..1233 /gene="Irx5" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" exon 1..246 /gene="Irx5" /inference="alignment:Splign:2.1.0" exon 247..652 /gene="Irx5" /inference="alignment:Splign:2.1.0" exon 653..1455 /gene="Irx5" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1455) AUTHORS Liu D, Pattabiraman V, Bacanamwo M and Anderson LM. TITLE Iroquois homeobox transcription factor (Irx5) promotes G1/S-...
db_xref="RGD:1561529" exon 1..684 /gene="Cdx4" /gene_synonym="RGD1561529" /inference="alignment:Splign:2.1.0" misc_feature 141..143 /gene="Cdx4" /gene_synonym="RGD1561529" /note="upstream in-frame stop codon" CDS 171..1037 /gene="Cdx4" /gene_synonym="RGD1561529" /codon_start=1 /product="homeobox protein CDX-4" /protein_id="NP_001100412.1" /db_xref="GeneID:302400" /db_xref="RGD:1561529" /translation="...
LOCUS NR_132637 594 bp RNA linear ROD 02-APR-2024 DEFINITION Rattus norvegicus homeobox B5 and homeobox B6, opposite strand (Hoxb5os), long non-coding RNA. ACCESSION NR_132637 VERSION NR_132637.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0110.1. Sequence Note...
LOCUS NM_001034144 1800 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK3 homeobox 1 (Nkx3-1), mRNA. ACCESSION NM_001034144 XM_224360 VERSION NM_001034144.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC100628.1. On Oct...
LOCUS NM_001109214 2713 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus engrailed homeobox 2 (En2), mRNA. ACCESSION NM_001109214 XM_001058797 XM_575315 VERSION NM_001109214.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001109599 2527 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus POU class 2 homeobox associating factor 1 (Pou2af1), mRNA. ACCESSION NM_001109599 XM_001074701 VERSION NM_001109599.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived...
gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /note="homeo box A4" /db_xref="GeneID:100912525" /db_xref="RGD:2814" exon 1..515 /gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /inference="alignment:Splign:2.1.0" CDS 5..862 /gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /note="homeobox protein Hox-A4-like; Homeobox gene A4; homeobox protein R2; homeobox A4-like" /codon_start=1 /product="homeobox protein Hox-A4" /protein_id="NP_077326.1" /db_xref="GeneID:100912525" /db_xref="RGD:2814" /translation="...
LOCUS NM_001108399 1384 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus PBX homeobox 4 (Pbx4), mRNA. ACCESSION NM_001108399 XM_001069955 XM_341418 VERSION NM_001108399.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474031.2. On...
feature 58..60 /gene="Rhox5" /gene_synonym="Pem" /note="upstream in-frame stop codon" exon 94..175 /gene="Rhox5" /gene_synonym="Pem" /inference="alignment:Splign:2.1.0" CDS 97..723 /gene="Rhox5" /gene_synonym="Pem" /note="homeobox protein Pem; reproductive homeobox on chromosome X 5; placenta and embryonic expression protein; placentae and embryos oncofetal; Homeobox gene Pem; reproductive homeobox 5" /codon_start=1 /product="homeobox protein Rhox5" /protein_id="NP_071511.2" /db_xref="GeneID:24631" /db_xref="RGD:3295" /translation="...
db_xref="RGD:1306511" exon 1..845 /gene="Hoxd10" /inference="alignment:Splign:2.1.0" CDS 101..1123 /gene="Hoxd10" /codon_start=1 /product="homeobox protein Hox-D10" /protein_id="NP_001100564.1" /db_xref="GeneID:303991" /db_xref="RGD:1306511" /translation="...Y, Li H, Wei X, Wu H, Wang H, Wilcox CS, Hultstrom M, Zhou X and Lai EY. TITLE Sympathoexcitation in Rats With Chronic Heart Failure Depends on Homeobox D10 and MicroRNA-7b Inhibiting GABBR1 Translation in Paraventricular Nucleus JOURNAL Circ Heart Fail 9 (1), e002261 (2016) PUBMED 26699387 REMARK...
LOCUS NM_001106303 1497 bp mRNA linear ROD 24-JUN-2024 DEFINITION Rattus norvegicus H6 family homeobox 2 (Hmx2), mRNA. ACCESSION NM_001106303 XM_001054069 XM_215056 VERSION NM_001106303.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473953.1. On or before...
LOCUS NM_001433273 718 bp mRNA linear ROD 08-AUG-2024 DEFINITION Rattus norvegicus reproductive homeobox 9 like 1 (Rhox9l1), transcript variant 2, mRNA. ACCESSION NM_001433273 VERSION NM_001433273.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NR_176814 2849 bp RNA linear ROD 02-APR-2024 DEFINITION Rattus norvegicus cut-like homeobox 1, pseudogene 1 (Cux1-ps1), non-coding RNA. ACCESSION NR_176814 XM_039108675 VERSION NR_176814.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ014.1. On Jul 7, 2022...
LOCUS NM_001433272 850 bp mRNA linear ROD 11-AUG-2024 DEFINITION Rattus norvegicus reproductive homeobox 9 like 1 (Rhox9l1), transcript variant 1, mRNA. ACCESSION NM_001433272 XM_006257483 VERSION NM_001433272.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
LOCUS NM_001037581 714 bp mRNA linear ROD 30-MAR-2024 DEFINITION Rattus norvegicus reproductive homeobox 10 (Rhox10), mRNA. ACCESSION NM_001037581 VERSION NM_001037581.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0121.1. On Aug...
LOCUS NM_001433432 1056 bp mRNA linear ROD 21-AUG-2024 DEFINITION Rattus norvegicus TGFB-induced factor homeobox 2-like, X-linked 2 (Tgif2lx2), mRNA. ACCESSION NM_001433432 XM_056985152 VERSION NM_001433432.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 286..402 /gene="Tgif2lx2" /gene_synonym="RGD1561826" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN // REFERENCE 1 (bases 1 to 1056) AUTHORS Gaudet,P., Livstone,M.S., Lewis,S.E...
gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="homeobox A2" /db_xref="GeneID:103690123" /db_xref="RGD:11468112" exon 1..563 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /inference="alignment:Splign:2.1.0" misc_feature 80..82 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="upstream in-frame stop codon" CDS 185..1303 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="Homeobox gene A11; Homeobox gene A2; homeobox protein Hox-1.11; homeo box A2" /codon_start=1 /product="...
Synonym: hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A
NM_012581.3 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
alignment:Splign:2.1.0" misc_feature 1432..1434 /gene="Hoxa5" /note="upstream in-frame stop codon" CDS 1492..2637 /gene="Hoxa5" /note="hox-1.3; homeobox protein Hox-1.3; homeobox protein Hox-A5-like" /codon_start=1 /product="homeobox protein Hox-A5" /protein_id="NP_077365.1" /db_xref="GeneID...ORIGIN // REFERENCE 1 (bases 1 to 2938) AUTHORS Kato,H., Ario,T., Kishida,T., Tadano,M., Osawa,S., Maeda,Y., Takakura,H. and Izawa,T. TITLE Homeobox A5 and C10 genes modulate adaptation of brown adipose tissue during exercise training in juvenile rats JOURNAL Exp Physiol 106 (2), 463-474 (2021)...
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : https://ggrna.dbcls.jp/rn/homeobox
lang : en |
div : |
spe : rn |
query_string : homeobox |
format : html |
download :
0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.129 | 0.051 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.134 | 0.005 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]