LOCUS       NM_001109599            2527 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus POU class 2 homeobox associating factor 1
            (Pou2af1), mRNA.
ACCESSION   NM_001109599 XM_001074701
VERSION     NM_001109599.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Shore P, Dietrich W and Corcoran LM.
  TITLE     Oct-2 regulates CD36 gene expression via a consensus octamer, which
            excludes the co-activator OBF-1
  JOURNAL   Nucleic Acids Res 30 (8), 1767-1773 (2002)
   PUBMED   11937630
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Lee L, Stollar E, Chang J, Grossmann JG, O'Brien R, Ladbury J,
            Carpenter B, Roberts S and Luisi B.
  TITLE     Expression of the Oct-1 transcription factor and characterization
            of its interactions with the Bob1 coactivator
  JOURNAL   Biochemistry 40 (22), 6580-6588 (2001)
   PUBMED   11380252
  REMARK    Erratum:[Biochemistry 2001 Jul 27;40(28):8430]
REFERENCE   3  (bases 1 to 2527)
  AUTHORS   Chasman D, Cepek K, Sharp PA and Pabo CO.
  TITLE     Crystal structure of an OCA-B peptide bound to an Oct-1 POU
            domain/octamer DNA complex: specific recognition of a protein-DNA
            interface
  JOURNAL   Genes Dev 13 (20), 2650-2657 (1999)
   PUBMED   10541551
REFERENCE   4  (bases 1 to 2527)
  AUTHORS   Chang JF, Phillips K, Lundback T, Gstaiger M, Ladbury JE and Luisi
            B.
  TITLE     Oct-1 POU and octamer DNA co-operate to recognise the Bob-1
            transcription co-activator via induced folding
  JOURNAL   J Mol Biol 288 (5), 941-952 (1999)
   PUBMED   10329190
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473975.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001074701.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMEA5760494 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..2527
                     /gene="Pou2af1"
                     /note="POU class 2 homeobox associating factor 1"
                     /db_xref="GeneID:690528"
                     /db_xref="RGD:1594728"
     exon            1..112
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    1..3
                     /gene="Pou2af1"
                     /note="upstream in-frame stop codon"
     CDS             97..867
                     /gene="Pou2af1"
                     /note="POU domain, class 2, associating factor 1; POU
                     class 2 associating factor 1"
                     /codon_start=1
                     /product="POU domain class 2-associating factor 1"
                     /protein_id="NP_001103069.1"
                     /db_xref="GeneID:690528"
                     /db_xref="RGD:1594728"
                     /translation="

MLWQKSTASEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGTAGPPAAVVLPHQPLATYSTVGPSCLDMEVSAPTVTEEGTLCAGWLSQPAPATLQPLAPWTPYTEYVSHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTPRSTATPAVGPQLEGPEHQAPLTYFPWPQPLSTLPTSSLQYQPPAPTLSGPQFVQLPISIPEPVLQDMDDPRRAISSLTIDKLLLEEEESNAYELNHTLSVEGF"

     misc_feature    115..861
                     /gene="Pou2af1"
                     /note="POU domain, class 2, associating factor 1; Region:
                     PD-C2-AF1; pfam09310"
                     /db_xref="CDD:430516"
     exon            113..243
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     exon            244..286
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     exon            287..552
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     exon            553..2527
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

taaacggtggttccacaggaggaaagcacgcccagtcacattaaagaagccaaactgtctgcttcaaagagaaaaggcaacatcctgtcacaagccatgctctggcaaaaatccacagcttcagagcaagctcctgcccctccacggccataccagggcgttcgagtcaaggagccggtgaaggagctactgagaagaaagcgtggccataccagtgttgggacagctggtccaccagctgcggtggtactgccccaccagcccctggcaacctacagcacagtgggtccttcctgccttgacatggaggtttctgctcccacagtgacagaggaggggacattatgtgctggctggctctcccaacctgccccggccactcttcaacccttggctccatggacgccctacacggagtatgtgtcccatgaagctgtcagctgcccttactccgctgacatgtatgtgcagcctgtgtgccccagctatacagtggtgggaccctcctcggtattgacctatgcctccccaccactcatcactaacgtcacgccaagaagcacggctacacccgcagtggggccgcagctggagggcccagagcaccaggcgccccttacctatttcccgtggcctcagcccctttccacactgcccacctccagtctgcagtatcaacctccagccccaaccctgtctgggccccagtttgtccagctccccatttctatcccagagccagtccttcaggacatggatgaccccagaagggccatcagctctctgaccattgacaagcttcttctggaggaagaggagagcaacgcttacgagctcaaccacaccctctccgtggagggcttctagggttggcttgcatctaatagccctttcacccaaaactgagatttaaaaggagcccagatggagcccagaagtagctattccataggctccctttcttcctaaagctaaattgtattccttcttttctcccttcttccttctctccacttccttccaccaagtcccatttcacttctttcttatttctcctttcagttttcttcctctggagcagcaaactatagtgatattatgaacaatactttatactgaatgtcaccaagtcgtgcagctcagggttttcctttcgagtcacatcactagggaagcgtccttctctcaggtgccctctgcttcctggtggcagtagctttagaaatctactctatgaccatttgccctttctgccattctgaaatgcatttcagttttgttttgtgtgccatgctcagccttggccagatgtgctatataagtagatgtttctggtgtggctagaggggatgggacaggaccatcagggtaggtagtggcagtcagtgaatgatggacgacagggatgaggaggagcaggacacggacctgtgtctgtggttagagagggagttggggtgggggaaggctgaggagtgacctaacaatcagctttgaaaaaaatatcactttaatgcaatttaggggttcgtgatggtgattatgagctggctagggatcaatgatgagtcaggccctctaatgtgatgccagcacttcaaatactttttgtcagcatattgtcatagcaacaggaaaaggaacaggtgaagcctatcagtgaggaggctctcacttagtccttccacgtgggcttttgcttcctgttgtgactcacccagggccatcttgatacactgccatggcgtcttccgcccactcactgtctgtctctggggtcctggagtcctggttggcaggcctaccagccttaattttcacttttctttagtttttggtggagaagcataacattttctgttgagtgattgctgtcttggggtgctctgctcctgaggtggatgtgtgtgtctttgggaactggcccacgattactaatgatgtatgtcaccattacatacacacaagcttagtctatagaatccatgtagaataacagacgttctagaaaatgacagtttctttgatatcccaccccctttgcttccatttttaatgaaaacttagagttacctgtcttttttctttcttctgctttgtgtttattttaattcagacatttcaccatctacctaaaatcctgcgtatcttgaatttcctgttattcctctttaatacttggattgaatgttacatctggatggtgggtttacacttctattggtggttactatgaacaagaaagggagcaggaagcctcggcttatttcattaagaccctgttgcacttaaaaacactatttaagattttccagctactttgggagtttgagataatgcaggggtggcaatcacagaggagataatgctgggaaaacaaaccaaaacagcaaagaaagtagtgtgagtgtttgctaggattgaattggtaccttgaaacctcaagtcttggctgcaggtgtccatccagatttcctcctgagtttttctactcctatgcaacattttcaataaagatttgtcgatg

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