LOCUS       XM_063273630            3578 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus Meis homeobox 1 (Meis1), transcript
            variant X5, mRNA.
ACCESSION   XM_063273630
VERSION     XM_063273630.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086032) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3578
                     /gene="Meis1"
                     /note="Meis homeobox 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 10 ESTs, 45 long SRA
                     reads, 6 Proteins"
                     /db_xref="GeneID:686117"
                     /db_xref="RGD:1585482"
     CDS             2365..3537
                     /gene="Meis1"
                     /codon_start=1
                     /product="homeobox protein Meis1 isoform X5"
                     /protein_id="XP_063129700.1"
                     /db_xref="GeneID:686117"
                     /db_xref="RGD:1585482"
                     /translation="

MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDVTRAANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGNQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM"

     misc_feature    2686..2940
                     /gene="Meis1"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(3196..3198,3325..3327,3334..3339,3346..3348)
                     /gene="Meis1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    3235..3351
                     /gene="Meis1"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

aattgattttccccgcagccaatgcgcggctgcctgggcggggacgccttccgattggcggagctctctccacggctgcctaccgagatttgggtgagctcattttccagtcgaccgcagggggagttttctgcgaggttttagctgggggtgggggggatcctctccgagcccagcgagctgagagccctgcctgggatgtgaggtttacagctgctccgagagctaccgagactgagctatctaagccaagagagccaggctcagaaacataaagagtaaaattgcccccactaaatagagtaactgaaggcaagcgcggagcgagaataaaaagactcaaaaaacaattttaagtccagggtgtggtatttcaagagagaaagttaaaaaccactggctggttggagacttcaagttgtgggcagggtcagcttttgtctgaaatctcagcttccgaagtggatttcttttcctctggaactgggagttttcccggggccgggttcggagatagacaaacggagggatggaggtctgggaggccggcgccgggcgtcgccgctgaaggagctggggggcgcagcgtctccaggccccaggaaggccgaggctggagcccctcggcgtcgcccagacaaaggcagcgccggccgcagcgcagccgagctctgcagcctcgccgcgccgtgccctcgggcgcacggctaaccttgcggactgcgcgaccgagaaagagcctcgggtccgggggctcccaggtcccggcggcccgcgaggtctggcagctaggtgcgggcgctgagtttcgctctccggcggtcataaatagctcggtgtttgtaaacaagcgctgggggcacattcccggcgctcggctcattgttccctcccttcctccctcacttcgcgccgcggctagggctgagggctaccagggtgaggaggcgggggcgtcgggacccaaagtggcaaaatgcaagcatttccataactccagccctacgaccacttctgacagcgggggccggggtgggggtagaaaaaaagaaaaaacccaaaaccaaaagaaaaaaggaaagaaaacctctaagctgggtttgcagaacgcccgggcgaccgctaccccacgttctcgggactcctgagctgaaccttttccaatccagcaccagctcctcttcttgctctggctttgacttttcttctccgggagtctagcagagaatccagtacttttggcatcaaccccccaccccgaaaaatactggcagaccccaataatttcgaggaaagtcttgaagtctttcatgagcggagcactgagcgaattaactccggcatctgcctgccctacgtttattcccgatttatttcaagagtccgctttgggaagagaggctggaaggggacctaaagtcggcgggtcgggagctgcagcctgcatttgtgtgcatgtgccttgggtgtgtggtgttagtgcctgggcgtgcgaattcatggagcgcctttctgcctctccagtgcggccagagctcgcttcgcgcacccacccctgccgaggagcctacttgctgcagcccaatgcattgtgtaagacgcgacctgttatggccaccactacttccgggttctagcattctggtcggaatccacctctccgcctgtgcaacacacactttacacacgcacggcgactgcaagcgggcagcatcgatcgtggctcctttaagacaaactcagacagacatttttttaaccctcctctctaatctcccttcagtgcagcagttgcaaagagggagagagaaagagaaagagagcgagagaagagagaaactgattgggaattaggactgattcaaggaaagcgggcgctagggctttgtgcatttgaatattaacatttgaggtgttctgaccagaagaagacagaacggatgatcattcattcaccacgttgacaacctcgcctgtgattgacagctggagtggcagaaagccatgagatttggtagttggttctgaggggcgctcttttttttctttttcttttcttttctttctttttttttaactgatttttttgggggggaagagaagatctgcttttttttccctcccactgctgtcttggtggaaccagagcgcttttatgctcagcgacgcgggcgccttgcttcaggtccggtagaccgaagatctgggaccagtaattcacactgctggagacgcaaagggatttttttgttactgttgtgctttatttttttttccgagggagtttgcatatttgtttcttttcacactggccttaaagaggatatattagaagttgaagaaggaagggaggcagagaggccgatggcgcaaaggtacgacgatctaccccattatgggggcatggatggagtaggcatcccctccacgatgtatggggacccgcatgcagccaggtctatgcagccggtccaccacctgaaccacgggcctcctctgcactctcatcagtacccgcacacagctcataccaacgccatggcccccagcatgggctcctcagtcaatgacgctttaaagagagataaagatgccatttatggacaccccctcttccctctcttagcactgatttttgagaaatgtgaattagctacttgtaccccccgcgagccgggggtggcgggcggggacgtctgctcgtcagagtcattcaatgaagatatagcggtgttcgccaaacagattcgtgcagaaaaacctctattctcttctaatccagaactggataacttgatgatccaagccatacaagtattaaggtttcatctgttggaattagagaaggtacacgaattatgtgacaatttctgccaccggtatattagctgtttgaaagggaaaatgcctatcgatttggtgatagatgatagagaaggcggatcaaaatcagacagtgaagatgtaacaagagcagcaaatctaactgaccagccctcttggaatagagaccatgatgacacggcatccactcgttcaggaggaaccccgggcccttccagcggtggccacacttcacacagtggggataacagcagtgagcaaggtgatggcttggacaacagtgtagcttcccccagcacaggtgacgatgatgaccctgataaggacaaaaagcgtcacaaaaagcgtggcatctttcccaaagtagccaccaatatcatgagggcgtggctgttccagcatctaacacacccttacccttctgaagagcagaaaaagcagttggcacaagatacgggactcaccatccttcaagtgaacaattggtttattaatgcgcggagaagaatagtgcagcccatgatagatcagtccaaccgagcaggcaaccaagggacaccttataaccccgatggacagccaatgggaggttttgtaatggacggtcagcagcacatgggcatcagagcgccaggacctatgagtggaatgggcatgaatatgggcatggaggggcagtggcactacatgtaacgttcatctagttaaccaatcgaaagccagggggaagtaag

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