LOCUS       NM_001109244             816 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus ladybird homeobox 2 (Lbx2), mRNA.
ACCESSION   NM_001109244 XM_001072452 XM_575575
VERSION     NM_001109244.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473957.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001072452.1, XM_575575.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132278,
                              SAMD00132284 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..816
                     /gene="Lbx2"
                     /gene_synonym="RGD1561172"
                     /note="ladybird homeobox 2"
                     /db_xref="GeneID:500224"
                     /db_xref="RGD:1561172"
     exon            1..256
                     /gene="Lbx2"
                     /gene_synonym="RGD1561172"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..651
                     /gene="Lbx2"
                     /gene_synonym="RGD1561172"
                     /note="ladybird homeobox homolog 2"
                     /codon_start=1
                     /product="transcription factor LBX2"
                     /protein_id="NP_001102714.1"
                     /db_xref="GeneID:500224"
                     /db_xref="RGD:1561172"
                     /translation="

MNSGRQRRTPFSIADILGRSMVPGAPSEPRLPEAGPDPASPLCALEELASKTFQGHSPRAPQPSEGRAVPEAPPGPGTGVRRRRKSRTAFTPQQVLELERRFVFQKYLAPSERDGLAARLGLANAQVVTWFQNRRAKLKRDVEEMRADLASLCGLSPGVLCPPALPDSASSPDLQPTPSGPDSEPGLSDEEIQVDD"

     misc_feature    order(310..324,328..330,379..381,397..399,436..438,
                     442..447,454..459,463..471,475..480)
                     /gene="Lbx2"
                     /gene_synonym="RGD1561172"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    316..477
                     /gene="Lbx2"
                     /gene_synonym="RGD1561172"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(316..318,325..327,445..447,454..459,466..468)
                     /gene="Lbx2"
                     /gene_synonym="RGD1561172"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            257..816
                     /gene="Lbx2"
                     /gene_synonym="RGD1561172"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cctaggaggttgtggaagccaagcgcagcgggaggcgggatcgctacaaccccgcttgccatgaattctggacgtcagcgccggacaccctttagcatcgcagacatcctcggtcggagcatggtccccggagcaccttctgagccacggcttcctgaagccggccctgatcctgcatcgccactgtgtgcgctggaggagcttgctagtaaaactttccagggccattctcctcgcgctccacagccttctgaaggcagagccgtcccggaggcgccgccgggtcctggcactggtgtccggagacgccgcaagtcgcgcaccgccttcactccacagcaggtgctggagctggagcggcgattcgtcttccagaagtacttggcaccgtcagagcgcgacggactggctgcacgactgggtctggctaatgcgcaagtggtcacttggttccagaaccgtcgcgccaagctcaagcgggatgtggaggagatgcgcgcggacctggcctccctgtgcgggttgtctccgggagtcctgtgccccccagcactgccagacagcgcttcaagccctgacctccagccaaccccttcagggcccgattccgagcccggcttatcagatgaagagatacaggtggacgattgaaagaaaagctgctgcctgccctggattcttgggccctggactcctgctaggggcttttgtctcggttcccgggtggagggtagagacccatttagctctgttctgttcctaactccacactcctacttttcttactcgttaagaataaagccgccgctctgctac

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