# [ GGRNA.v2 | 2026-01-18 07:31:51 ] # # homeobox 106 # [INTERSECTION] 106 # # accession version gi length symbol synonym geneid division source definition nt_position aa_position NM_001407494 NM_001407494.1 714 HOXC6 HOXC-6 100858368 RefSeq Gallus gallus (chicken) Gallus gallus homeobox C6 (HOXC6), mRNA. NM_205434 NM_205434.1 1964 HOXD13 chox-4.8; chox-4G 396415 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D13 (HOXD13), mRNA. NM_204512 NM_204512.1 954 BSX 395183 RefSeq Gallus gallus (chicken) Gallus gallus brain specific homeobox (BSX), mRNA. NM_001305224 NM_001305224.2 1708 HOXA9 HOXA-9 396096 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A9 (HOXA9), mRNA. NM_204911 NM_204911.2 818 HOXB8 CHOX-2.4; Hoxb-8; OX2.4 395737 RefSeq Gallus gallus (chicken) Gallus gallus homeobox B8 (HOXB8), mRNA. NM_204364 NM_204364.2 1194 SIX3 CSIX3 378786 RefSeq Gallus gallus (chicken) Gallus gallus SIX homeobox 3 (SIX3), mRNA. NM_001320906 NM_001320906.1 1209 LHX5 771259 RefSeq Gallus gallus (chicken) Gallus gallus LIM homeobox 5 (LHX5), mRNA. NM_001243724 NM_001243724.2 1375 RAX cRax; cRax1; cRax2; orx; RAX2; RX1; RX2 100677794 RefSeq Gallus gallus (chicken) Gallus gallus retina and anterior neural fold homeobox (RAX), mRNA. NM_001005616 NM_001005616.1 3322 PROX1 395802 RefSeq Gallus gallus (chicken) Gallus gallus prospero homeobox 1 (PROX1), mRNA. NM_001397359 NM_001397359.1 3204 LHX1 LIM-1; LIM-homeobox; LIM1 396381 RefSeq Gallus gallus (chicken) Gallus gallus LIM homeobox 1 (LHX1), mRNA. NM_205533 NM_205533.3 1018 HMX1 GH6 396546 RefSeq Gallus gallus (chicken) Gallus gallus H6 family homeobox 1 (HMX1), mRNA. NM_204990 NM_204990.2 892 MIXL1 CMIX 395838 RefSeq Gallus gallus (chicken) Gallus gallus Mix paired-like homeobox (MIXL1), mRNA. NM_001025355 NM_001025355.1 1453 HOXB5 Ghox-2.1; Hoxb-5 425096 RefSeq Gallus gallus (chicken) Gallus gallus homeobox B5 (HOXB5), mRNA. NM_001398309 NM_001398309.1 880 HOXA6 HOX1; HOX1.2; HOX1B 420630 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A6 (HOXA6), transcript variant 2, mRNA. NM_001007985 NM_001007985.2 1487 HMX3 NKX5-1 429199 RefSeq Gallus gallus (chicken) Gallus gallus H6 family homeobox 3 (HMX3), mRNA. NM_205249 NM_205249.2 1332 HOXD12 396178 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D12 (HOXD12), mRNA. NM_001030987 NM_001030987.4 823 HOXA6 HOX1; HOX1.2; HOX1B 420630 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A6 (HOXA6), transcript variant 1, mRNA. NM_204559 NM_204559.2 2289 MSX2 HOX-8; HOX8; Msx-2 395245 RefSeq Gallus gallus (chicken) Gallus gallus msh homeobox 2 (MSX2), mRNA. NM_204614 NM_204614.2 2614 CDX4 cCdx-B; CDX4B; CDXB; CHOX-CAD2; ox-cad2 395320 RefSeq Gallus gallus (chicken) Gallus gallus caudal type homeobox 4 (CDX4), mRNA. NM_207177 NM_207177.2 1251 HOXD8 396301 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D8 (HOXD8), mRNA. NM_001318419 NM_001318419.2 1677 HOXA5 HOX1.3; HOX1C 100858404 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A5 (HOXA5), mRNA. NM_205488 NM_205488.3 1326 MSX1 CHOX-7; GHOX-7; HOX-7 396484 RefSeq Gallus gallus (chicken) Gallus gallus msh homeobox 1 (MSX1), mRNA. NM_205012 NM_205012.3 1379 HESX1 GANF 395864 RefSeq Gallus gallus (chicken) Gallus gallus HESX homeobox 1 (HESX1), mRNA. NM_001397002 NM_001397002.2 2589 HOXD1 101750316 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D1 (HOXD1), mRNA. NM_204620 NM_204620.2 1528 HOXD11 GHOX4.6 395328 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D11 (HOXD11), mRNA. NM_001397963 NM_001397963.1 3780 HOXB1 Ghox-lab; HOXB-1 395900 RefSeq Gallus gallus (chicken) Gallus gallus homeobox B1 (HOXB1), transcript variant 3, mRNA. NM_205015 NM_205015.2 2493 TLX1 HOX11; TLX-1 395868 RefSeq Gallus gallus (chicken) Gallus gallus T-cell leukemia homeobox 1 (TLX1), mRNA. NM_205472 NM_205472.1 2375 POU2F1 chOCT-1; Oct-1 396463 RefSeq Gallus gallus (chicken) Gallus gallus POU class 2 homeobox 1 (POU2F1), mRNA. NM_001389365 NM_001389365.2 2111 SIX6 OPTX2; Six9 395843 RefSeq Gallus gallus (chicken) Gallus gallus SIX homeobox 6 (SIX6), mRNA. NM_205293 NM_205293.3 1404 HOXB4 Chox-Z 396230 RefSeq Gallus gallus (chicken) Gallus gallus homeobox B4 (HOXB4), mRNA. NM_001396636 NM_001396636.1 1741 HOXB6 GHOX-2.2 777548 RefSeq Gallus gallus (chicken) Gallus gallus homeobox B6 (HOXB6), mRNA. NM_001080859 NM_001080859.5 2163 HOXB1 Ghox-lab; HOXB-1 395900 RefSeq Gallus gallus (chicken) Gallus gallus homeobox B1 (HOXB1), transcript variant 1, mRNA. NM_001397895 NM_001397895.1 3373 HOXB3 2.7; CHOX; CHOX-Z; HOXB-3; HOXB4 395502 RefSeq Gallus gallus (chicken) Gallus gallus homeobox B3 (HOXB3), mRNA. NM_001398206 NM_001398206.1 1392 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 14, mRNA. NM_205252 NM_205252.2 1895 HHEX PROBOX 396182 RefSeq Gallus gallus (chicken) Gallus gallus hematopoietically expressed homeobox (HHEX), mRNA. NM_001396999 NM_001396999.1 2138 HOXD9 771214 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D9 (HOXD9), transcript variant 1, mRNA. NM_205068 NM_205068.2 1839 GBX2 GBX1 395950 RefSeq Gallus gallus (chicken) Gallus gallus gastrulation brain homeobox 2 (GBX2), mRNA. NM_001397000 NM_001397000.1 1689 HOXD9 771214 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D9 (HOXD9), transcript variant 2, mRNA. NM_205331 NM_205331.2 1237 GSC 396273 RefSeq Gallus gallus (chicken) Gallus gallus goosecoid homeobox (GSC), mRNA. NM_001397014 NM_001397014.1 1699 DBX2 CHoxE 417801 RefSeq Gallus gallus (chicken) Gallus gallus developing brain homeobox 2 (DBX2), mRNA. NM_001398205 NM_001398205.1 1910 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 13, mRNA. NM_204193 NM_204193.2 1150 BARX1 BARX1B 374017 RefSeq Gallus gallus (chicken) Gallus gallus BARX homeobox 1 (BARX1), mRNA. NM_001277724 NM_001277724.3 1903 PRRX1 gMHox; MHOX; PMX1; Prx-1; Prx1 373941 RefSeq Gallus gallus (chicken) Gallus gallus paired related homeobox 1 (PRRX1), mRNA. NM_001030346 NM_001030346.3 1772 HOXA4 chox-1.4; HOX1.4 395307 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A4 (HOXA4), mRNA. NM_001012293 NM_001012293.3 1296 HOXD4 Chox-a 424139 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D4 (HOXD4), mRNA. NM_204619 NM_204619.2 2757 HOXA11 chox-1.9; ghox-1I; GHOX1I; HOX1I 395327 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A11 (HOXA11), mRNA. NM_001396407 NM_001396407.1 1452 GBX1 CHOX-7; CHox7; GBX-1 395377 RefSeq Gallus gallus (chicken) Gallus gallus gastrulation brain homeobox 1 (GBX1), mRNA. NM_001396623 NM_001396623.1 1449 HOXD10 Chox-4d 771246 RefSeq Gallus gallus (chicken) Gallus gallus homeobox D10 (HOXD10), mRNA. NM_001405851 NM_001405851.1 1539 TLX3 TLX-3 107054494 RefSeq Gallus gallus (chicken) Gallus gallus T cell leukemia homeobox 3 (TLX3), mRNA. NM_001396618 NM_001396618.1 6471 DMBX1 ATX 395271 RefSeq Gallus gallus (chicken) Gallus gallus diencephalon/mesencephalon homeobox 1 (DMBX1), mRNA. NM_204676 NM_204676.3 2415 CDX1 CDX-A; CDXA; CHox-cad; CHOX-CAD1 395397 RefSeq Gallus gallus (chicken) Gallus gallus caudal type homeobox 1 (CDX1), mRNA. NM_204139 NM_204139.2 2457 HOXA13 Hox A13 373934 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A13 (HOXA13), mRNA. NM_204893 NM_204893.3 2902 HOXC8 HOXC-8 395711 RefSeq Gallus gallus (chicken) Gallus gallus homeobox C8 (HOXC8), mRNA. NM_205426 NM_205426.2 4079 LHX9 LH-2 396397 RefSeq Gallus gallus (chicken) Gallus gallus LIM homeobox 9 (LHX9), mRNA. NM_205379 NM_205379.2 1610 TGIF1 TGIF 396339 RefSeq Gallus gallus (chicken) Gallus gallus TGFB induced factor homeobox 1 (TGIF1), mRNA. NM_001293098 NM_001293098.3 2975 PRRX2 PMX2; PRX-2; PRX2; S8 396314 RefSeq Gallus gallus (chicken) Gallus gallus paired related homeobox 2 (PRRX2), mRNA. NM_205358 NM_205358.2 2051 LMX1B LMX; LMX1 396312 RefSeq Gallus gallus (chicken) Gallus gallus LIM homeobox transcription factor 1 beta (LMX1B), mRNA. NM_204556 NM_204556.2 899 HOPX HOD; HOP; OB1 395241 RefSeq Gallus gallus (chicken) Gallus gallus HOP homeobox (HOPX), transcript variant 1, mRNA. NM_001001744 NM_001001744.2 2168 IRX4 373974 RefSeq Gallus gallus (chicken) Gallus gallus iroquois homeobox 4 (IRX4), mRNA. NM_001396998 NM_001396998.1 2045 EN1 En-1; en-3; Gg-En-1 771008 RefSeq Gallus gallus (chicken) Gallus gallus engrailed homeobox 1 (EN1), mRNA. NM_001398203 NM_001398203.1 2510 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 11, mRNA. NM_001398200 NM_001398200.1 2395 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 8, mRNA. NM_001398192 NM_001398192.1 2497 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 6, mRNA. NM_001398201 NM_001398201.1 2503 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 9, mRNA. NM_001398204 NM_001398204.1 2745 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 12, mRNA. NM_001398202 NM_001398202.1 2494 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 10, mRNA. NM_001398190 NM_001398190.1 2616 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 4, mRNA. NM_001397355 NM_001397355.1 957 HOPX HOD; HOP; OB1 395241 RefSeq Gallus gallus (chicken) Gallus gallus HOP homeobox (HOPX), transcript variant 6, mRNA. NM_001397351 NM_001397351.1 1214 HOPX HOD; HOP; OB1 395241 RefSeq Gallus gallus (chicken) Gallus gallus HOP homeobox (HOPX), transcript variant 2, mRNA. NM_001398191 NM_001398191.1 2808 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 5, mRNA. NM_001398188 NM_001398188.1 2721 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 2, mRNA. NM_205150 NM_205150.3 1673 HOXA2 HOXA-2 396055 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A2 (HOXA2), mRNA. NM_204759 NM_204759.2 2868 POU4F1L BRN-3; Brn-3a; BRN-3BRN3; BRN3; BRN3A 395521 RefSeq Gallus gallus (chicken) Gallus gallus POU class 4 homeobox 1 like (POU4F1L), mRNA. NM_001398193 NM_001398193.1 2839 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 7, mRNA. NM_001397353 NM_001397353.1 1529 HOPX HOD; HOP; OB1 395241 RefSeq Gallus gallus (chicken) Gallus gallus HOP homeobox (HOPX), transcript variant 4, mRNA. NM_001397352 NM_001397352.1 1296 HOPX HOD; HOP; OB1 395241 RefSeq Gallus gallus (chicken) Gallus gallus HOP homeobox (HOPX), transcript variant 3, mRNA. NM_204159 NM_204159.2 1319 DLX5 DLX-5 373969 RefSeq Gallus gallus (chicken) Gallus gallus distal-less homeobox 5 (DLX5), mRNA. NM_001349760 NM_001349760.2 2913 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 1, mRNA. NM_001397354 NM_001397354.1 1157 HOPX HOD; HOP; OB1 395241 RefSeq Gallus gallus (chicken) Gallus gallus HOP homeobox (HOPX), transcript variant 5, mRNA. NM_001398189 NM_001398189.1 2987 HOXA3 hoxa-4 395231 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A3 (HOXA3), transcript variant 3, mRNA. NM_204769 NM_204769.2 2021 VSX1 CHX10-1 395537 RefSeq Gallus gallus (chicken) Gallus gallus visual system homeobox 1 (VSX1), mRNA. NM_204768 NM_204768.1 2186 VSX2 CHX10 395536 RefSeq Gallus gallus (chicken) Gallus gallus visual system homeobox 2 (VSX2), mRNA. NM_204595 NM_204595.3 2324 HOXA7 HOXA-7 395290 RefSeq Gallus gallus (chicken) Gallus gallus homeobox A7 (HOXA7), mRNA. NM_001267719 NM_001267719.2 2032 EN2 En-2; Gg-En-2 100859435 RefSeq Gallus gallus (chicken) Gallus gallus engrailed homeobox 2 (EN2), mRNA. NM_204104 NM_204104.3 1973 RAX2 cRax1; cRaxL; RAX; RAX1; RAXL; Rx-like; RX1; RX2 373893 RefSeq Gallus gallus (chicken) Gallus gallus retina and anterior neural fold homeobox 2 (RAX2), mRNA. NM_205164 NM_205164.2 1617 NKX2-5 CNKX-2.5; NKX-2.5; NKX2E 396073 RefSeq Gallus gallus (chicken) Gallus gallus NK2 homeobox 5 (NKX2-5), mRNA. NM_001030335 NM_001030335.2 2466 LHX3 lim-3; LIM3 373940 RefSeq Gallus gallus (chicken) Gallus gallus LIM homeobox 3 (LHX3), mRNA. NM_001146142 NM_001146142.2 2737 NANOG 100272166 RefSeq Gallus gallus (chicken) Gallus gallus Nanog homeobox (NANOG), mRNA. NM_204799 NM_204799.3 978 VAX1 cVAX 395582 RefSeq Gallus gallus (chicken) Gallus gallus ventral anterior homeobox 1 (VAX1), mRNA. NM_001396684 NM_001396684.1 1789 ISL2 ISLET-2 396382 RefSeq Gallus gallus (chicken) Gallus gallus ISL LIM homeobox 2 (ISL2), transcript variant 1, mRNA. NM_001031120 NM_001031120.4 2835 HDX 422272 RefSeq Gallus gallus (chicken) Gallus gallus highly divergent homeobox (HDX), mRNA. NM_001396685 NM_001396685.1 2096 ISL2 ISLET-2 396382 RefSeq Gallus gallus (chicken) Gallus gallus ISL LIM homeobox 2 (ISL2), transcript variant 2, mRNA. NM_205414 NM_205414.2 3733 ISL1 ISL-1; ISLET-1 396383 RefSeq Gallus gallus (chicken) Gallus gallus ISL LIM homeobox 1 (ISL1), mRNA. NM_001396103 NM_001396103.1 3384 POU1F1 GHF-1; PIT-1; Pit-1*; PIT1 374215 RefSeq Gallus gallus (chicken) Gallus gallus POU class 1 homeobox 1 (POU1F1), transcript variant 2, mRNA. NM_204319 NM_204319.2 3315 POU1F1 GHF-1; PIT-1; Pit-1*; PIT1 374215 RefSeq Gallus gallus (chicken) Gallus gallus POU class 1 homeobox 1 (POU1F1), transcript variant 3, mRNA. NM_001396102 NM_001396102.1 3468 POU1F1 GHF-1; PIT-1; Pit-1*; PIT1 374215 RefSeq Gallus gallus (chicken) Gallus gallus POU class 1 homeobox 1 (POU1F1), transcript variant 1, mRNA. NM_205131 NM_205131.2 5287 ZEB1 TCF8 396029 RefSeq Gallus gallus (chicken) Gallus gallus zinc finger E-box binding homeobox 1 (ZEB1), mRNA. NM_001030668 NM_001030668.4 3016 HNF1A HNF-1-alpha; HNF-1A; HNF-1alpha; LF-B1; TCF-1; TCF1 416967 RefSeq Gallus gallus (chicken) Gallus gallus HNF1 homeobox A (HNF1A), mRNA. NM_001396678 NM_001396678.1 14696 ZFHX4 ZAX; ZFH-4 395904 RefSeq Gallus gallus (chicken) Gallus gallus zinc finger homeobox 4 (ZFHX4), mRNA. NM_001167686 NM_001167686.2 2092 PITX1 PTX1 374201 RefSeq Gallus gallus (chicken) Gallus gallus paired like homeodomain 1 (PITX1), transcript variant 3, mRNA. NM_001167684 NM_001167684.2 1245 PITX1 PTX1 374201 RefSeq Gallus gallus (chicken) Gallus gallus paired like homeodomain 1 (PITX1), transcript variant 1, mRNA. NM_001167685 NM_001167685.2 1971 PITX1 PTX1 374201 RefSeq Gallus gallus (chicken) Gallus gallus paired like homeodomain 1 (PITX1), transcript variant 2, mRNA. NM_205010 NM_205010.2 2068 PITX2 Ptx2 395862 RefSeq Gallus gallus (chicken) Gallus gallus paired like homeodomain 2 (PITX2), mRNA. NM_001396667 NM_001396667.1 1847 PAX1 GPX-1; Pax-1 100859138 RefSeq Gallus gallus (chicken) Gallus gallus paired box 1 (PAX1), mRNA. NM_001270878 NM_001270878.2 4374 TBX3 374202 RefSeq Gallus gallus (chicken) Gallus gallus T-box transcription factor 3 (TBX3), mRNA. NM_001004408 NM_001004408.3 5954 VTG1 LVII; TPRXL; VIT1; vitellogenin-1; YGP42 424547 RefSeq Gallus gallus (chicken) Gallus gallus vitellogenin 1 (VTG1), mRNA.