LOCUS       NM_001044668            1054 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus ladybird homeobox 2 (LBX2), mRNA.
ACCESSION   NM_001044668 XM_428966
VERSION     NM_001044668.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Kanamoto T, Terada K, Yoshikawa H and Furukawa T.
  TITLE     Cloning and expression pattern of lbx3, a novel chick homeobox gene
  JOURNAL   Gene Expr Patterns 6 (3), 241-246 (2006)
   PUBMED   16378763
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAENSK010000081.1.
            
            On Sep 23, 2021 this sequence version replaced NM_001044668.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY633714.1 [ECO:0000332]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-525               JAENSK010000081.1  192475-192999       c
            526-1054            JAENSK010000081.1  189615-190143       c
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
     gene            1..1054
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /note="ladybird homeobox 2"
                     /db_xref="CGNC:54237"
                     /db_xref="GeneID:431414"
     exon            1..525
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    168..170
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /note="upstream in-frame stop codon"
     CDS             225..866
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /note="ladybird-like homeobox 3"
                     /codon_start=1
                     /product="transcription factor LBX2"
                     /protein_id="NP_001038133.2"
                     /db_xref="CGNC:54237"
                     /db_xref="GeneID:431414"
                     /translation="

MTSAREAAATPPLPEERRRAALEQLPPPAHCNKPLTPFGIEDILARPSPPAHGAPPARIPEKAAGPAPPRTAPSSPLCALEELASKTFRGLELSALRAAEGRDPLSALAQRPTSKKRRKSRTAFSNQQLFELERRFVRQKYLSPADRDQLAQRLALSSAQVITWFQNRRAKLKRDLDEMRADVASLQALRLREPPPAPPGPAELSEEEIDVGA"

     misc_feature    order(576..590,594..596,645..647,663..665,702..704,
                     708..713,720..725,729..737,741..746)
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    582..743
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(582..584,591..593,711..713,720..725,732..734)
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            526..1054
                     /gene="LBX2"
                     /gene_synonym="LBX3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gctctcggcgccgcgaggccgagcgctccgccgccgccgccgggcccccgccgagggggcgggcagccaccgggcctttaagcgcggccgcggccgtcgcggggccgccgatgcgcgggaggggacagcggcggcgaggggcgatccgccgccgccccccggcagcatgaggcgggcgcgccgctgagcggccccggcagcaccgggcggccccgggccgcgccatgacctcggcgcgggaggcggccgcgacccccccgctgcccgaggagcgccgccgggccgcgctggagcagctgccgccgcccgcgcactgcaacaaaccgctgacgccgttcggcatcgaggacatcctcgcgcggccctccccccccgcgcacggcgctcccccggcccggatcccggagaaggcggcgggccccgcaccgccccgcaccgccccgtcctcgccgctgtgcgcgctggaggagctcgccagtaagacgttccgcgggctggagctgagcgcgctgcgggcggccgaaggtcgggaccctctgagcgccctcgcgcagcgcccgacgtcgaagaagcggcgcaaatcgcgcacggcgttcagcaatcagcagctcttcgagttggagcgccgcttcgtgcgccagaagtatttgtcccccgccgaccgcgaccaactggcgcagcgcctggcgctcagctccgcgcaggtcatcacctggttccagaaccgccgcgctaagctcaagcgcgacctggacgagatgcgcgccgacgtggcctctctgcaggcgctgcggctgcgggagccccccccggccccccccggccccgccgagctgtccgaggaggagatcgacgtgggggcctgaaagggagggagggccgggggggggggggggggggttcggtgcggtgctcccgttctctttgtttccgctttatttctcttttcttgtaattttattcccccctctcccccccgcgtccgtccgtcggccgccgccgggccccggtccgccccgtgtatatatgtggaataaaggggacatctccttaa

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