LOCUS       NM_001199474            2132 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus leucine twenty homeobox (LEUTX), transcript variant
            1, mRNA.
ACCESSION   NM_001199474 XR_026947
VERSION     NM_001199474.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 2132)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000212.1.
            
            On Dec 8, 2021 this sequence version replaced NM_001199474.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267649.231587.1,
                                           SRR13267647.10503.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992415, SAMEA103992437
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-429               JAENSK010000212.1  2230516-2230944     c
            430-531             JAENSK010000212.1  2230189-2230290     c
            532-734             JAENSK010000212.1  2228654-2228856     c
            735-2132            JAENSK010000212.1  2227155-2228552     c
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /map="5"
     gene            1..2132
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /note="leucine twenty homeobox"
                     /db_xref="CGNC:2909"
                     /db_xref="GeneID:422976"
     exon            1..429
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
     CDS             81..1103
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /note="developing brain homeobox 1"
                     /codon_start=1
                     /product="homeobox protein DBX1"
                     /protein_id="NP_001186403.1"
                     /db_xref="CGNC:2909"
                     /db_xref="GeneID:422976"
                     /translation="

MMFPSLIAPPAVYPSLLRPTPTLTLPQSLQSAFSSHSSFLVEDLIRISRPGAYPPRSAPPPSSMSPPASAPRTDSGTPELPGCTAARRICSSQSSGSDSTFLKFGVNAILSSTPRAESSPALLQSVPPKTFSFPYFEGSFQPFIRSSYFPAASAVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKFNPHPDLSDVGKKCSGEEEEEDEGPMACPPSPRHPLPYHPAPQHLRDRLGPQTPPSPSHSSSPSKPSDCSDSEEEDEEGEEEEEITVS"

     misc_feature    order(612..620,624..626,675..677,693..695,732..734,
                     738..743,750..755,759..767,771..776)
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    612..773
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    order(612..614,621..623,741..743,750..755,762..764)
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     exon            430..531
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
     exon            532..734
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
     exon            735..2132
                     /gene="LEUTX"
                     /gene_synonym="DBX1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acagagaaccctgcccggctcgccagtgggatctttattcacggacagacaggcggagggacggacggacggcccctgcgatgatgttccccagcctcatcgccccgccggccgtctacccgagcctgctgcggcccactcccaccctcaccttgccgcagtcgctgcaatccgccttctccagccactccagcttcctggtggaagacctgatccggatcagccggcccggcgcctacccgccccgcagcgctcccccgcccagcagcatgtcccccccggcctcagcacccaggacggactcggggacaccggagctgcccggctgcacggcggccaggaggatctgctcgtcccaaagctccggcagtgattccactttcctcaagttcggggtcaacgccatcctgtcctccaccccccgcgccgagtcctctcctgccttgcttcaaagcgtccctccaaagactttctccttcccgtactttgaaggatccttccagcctttcatcagatcttcctattttccagctgcctcagctgtcgtgcccatccccggcaccttctcatggccgctggctgcccgcggtaagccgcgccgtggcatgctgcgccgtgctgtcttctctgatgtgcagcgcaaggcactggagaagatgttccagaagcagaagtacatcagcaagcccgacaggaagaagctggcggccaagctgggcctcaaggactcacaggtgaagatctggttccagaacagaagaatgaagtggaggaactccaaagaaagagagctcctctcctctggtggctgcagagagcaaaccctccccaccaagttcaacccccacccagacctcagcgatgttggcaagaagtgctcaggggaggaggaggaagaggacgaaggccccatggcatgcccccccagcccccggcacccgctgccctaccacccagctccgcagcacctgcgggacaggctgggcccccagacacctccctccccatcacactccagcagccccagcaaaccctcagactgctcggactcagaggaagaggatgaggaaggggaggaagaagaagagataacagtctcttaggttgcccagctgcttctaccatcacatggggacattgcaaaggtgtacataacagagggctataaattgaagaggtgatgtcccacctacatgtccatgtgcttctccagggcaggttccctatcacattgccacaagccttcctgctccaggtattcctgatttttctgtcccatgagaaggttttcacacccatggtgtctgttgacctcttcaaaaccattcttctctgcttaacaaccaatatttgctcaattagcttcatcagcctgaaagcaaggagcagacagttcctttctttatagcagggaaatattttttccagacaaaacaccaccattaccaacaaaatacaggtgctgtggccattttcccaccttccaaccgaattcccagctattaccaagagttcagaacctgaggattgctctgatctggtgatcgtctcatcccaaggcaaaggatgtccatgagatgtgcagacaaaccactgtcccctcctcaccctcaccatgccacagacctgcgggaaccaccacaatcgccttcaggtataacacagtgtgccttgtgtagtggggaccttctctgttggtgtttttttatttaatttacgtatccattctctagacgcagcactgtctaactcgcttttctgcccacaggcctgtgcttgctttccgcttggcttctgctatatgctgtggacagaggaaaggggatgtacctctttggttttgactgaactttgctgtctttgcacagctgatatgaactgtacgctactttgtacacttactctgtatggatgttttataccaaggttattgtgaaagactataacaatggctgaataaggtttcttttttttttaattaaatgatggctgaactacgaacaaatgtagctgtttaaatgtgtaacttataaagaaacacttttattttgtattttaccatgtacagactttaaatatgtgtatatataataaaatgaatgactgccaaataaatgaatgtagatttccaa

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