LOCUS       NM_001305645            2858 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus homeobox A10 (HOXA10), mRNA.
ACCESSION   NM_001305645 XM_001235692
VERSION     NM_001305645.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2858)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 2858)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000037.1.
            
            On Nov 18, 2021 this sequence version replaced NM_001305645.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on chicken transcript alignments and protein
            orthology.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13267655.1199.1, JF923883.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1274              JAENSK010000037.1  1584739-1586012     c
            1275-2858           JAENSK010000037.1  1581807-1583390     c
FEATURES             Location/Qualifiers
     source          1..2858
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
     gene            1..2858
                     /gene="HOXA10"
                     /note="homeobox A10"
                     /db_xref="CGNC:16063"
                     /db_xref="GeneID:776143"
     exon            1..1274
                     /gene="HOXA10"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    425..427
                     /gene="HOXA10"
                     /note="upstream in-frame stop codon"
     CDS             455..1549
                     /gene="HOXA10"
                     /codon_start=1
                     /product="homeobox protein Hox-A10"
                     /protein_id="NP_001292574.1"
                     /db_xref="CGNC:16063"
                     /db_xref="GeneID:776143"
                     /translation="

MSARKGYPLPSPNYSTTMSCSESPAANSFLVDSLISAGRGDAAAAGGGGGGGGGYYPGSGLYLPQASELSYGLQGCGLFPVLGKRNEGTSQSMVPSTHPYVSGMEVWLDPPRSCRMEEPESQQATSCSFAQNIKEESSYCLYDSEKCPKGSAAADLAPFPRLSAEVSPSANGTGVPVPGYFRLSQAYGTSKGYGAGPAGTAPFAPQPPGRFQPPPSGPPVPEAGRREDEERSPSPSACGSQREDETRASSSTAEELSPAPSEGSKASPEKEPVGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRTVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS"

     misc_feature    1325..1495
                     /gene="HOXA10"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            1275..2858
                     /gene="HOXA10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

taaaacacagggagagccgcggctttattaatttcgtgacacacacacgggctgctcggggaggtgagcacgcatcgcttccggagagcccgaccgcggggagagaggagcgataataaaagcttcatctggccgcggccgcagccggggtgtcataaacaccgccgcgccgagcggtgcgtggggcagagcggagggagccgggagccgccgcctgccccgctccggccctgccccgccacgccgctccgcacgtgtgcgtgtggctggaaatccatatcgcgcattaatatccatccatatcccaaattcagaggtcgacctgagagcagctcggtgcatacgaaaccagacggggaggggttgctggggaggcccgggcttccattggctgcaagcgttcgccgcggtgcgggggtatctctaatcatattcagcatgttttgcacaagaaatgtcagccaggaagggctatccgctcccttcgccaaattattccacgacaatgtcatgctccgagagcccggctgcaaactctttcctggtggactcgttgatcagcgcgggcagaggggacgcggcggcagcgggaggcggaggcggaggaggaggcggctactacccgggcagcgggctctacctgccacaggcgtccgagctgtcctacgggctgcagggctgcggactgttccccgtcctgggcaaacgcaatgaaggtacttcgcaaagcatggtccccagcacgcacccctacgtgtcggggatggaagtgtggctagacccgccccgctcctgtcgcatggaagagccggagagccagcaggccacctcgtgctccttcgctcaaaacattaaggaggagagctcctactgcctctatgactcagagaagtgccccaagggctcggccgccgccgacctcgctcccttcccgcggctgagcgccgaggtcagcccctccgccaacggcaccggggtgccggtcccgggctacttccgcctctcccaggcttacggcacctccaagggctacggcgcggggccggccgggacggcccccttcgctccgcagcctcccggccgcttccagccgccgccgtcggggccgcccgtgccggaggcgggcaggagggaggacgaggagcgctcccccagcccctcggcgtgcggctcccagcgggaggacgagacccgcgcttcgtcgtccaccgccgaggagctctcccccgcgccgtcggagggcagcaaggcctctcccgagaaggagcccgtaggcaattcaaaaggagaaaatgcagcaaactggctaaccgcaaaaagtggccgaaagaaacggtgcccctataccaagcatcaaactctcgagctggaaaaggagtttctgttcaatatgtacctgactcgtgagcgtcgcctagagatcagccgcacagtccacctcacagacagacaagttaaaatctggtttcagaaccgcagaatgaaactgaagaaaatgaacagagagaataggattcgggagctcacagccaactttaatttctcttgatgaacctataaacacatcttgatggtttaaagagccagtatcattttcctaggctgtagtcatccgcacctgtacggattaacgattttagacgttctcagtatgtccttaaactcttaatagctgcttcggggctgcggggggagcggaagagagccacgctaacgctgagggccatgtgtgagcctcctcggttcctgcagcctttcccgggcccgcttcgctctttcaagctttgaaaacccagaaataggatttcaggagccgcaaatattccatccatcccccccccatcccccccctttccctcccccgtgtctctccgaaaagtaaacgagctcggttaaaggcgcattcttttaaaatataggcggtgtaactcggactgtgagcagcttcggaatgaatcatttaagccgtgccatacttctatatattgggagctcagctttttccccccctctgttttccttgtctcccccctccccctttatccttcccgaagcaggactcgcaataatgaaatgcaggcatcctttaaaagggcttcatgggaaccggtgttaagagccatttttttgttctttaccttgaaagtcaatatgacggctttgaaattggccaggaaaatgaaatctcttctctttaaagatatatatatatatatatatatatatatgtattcgtctcgctcatggactaaatgatgacacttacctctgaatttctctctctctttctggttgtagatatttacgtaacgtagttttgcttaaagatgtggaattagtgattttttgttgttgttggtcgattaatagcgttaccgttggtaacacgggataagcacacaacggttcccccttgagaaaaaaaaaacaataaaaggccgtcactttttcctcactaatttcactgaaaagtgtacatcctgaacatcaaaaggactttctgagccagagcctgagatagcgagggagggtttgtccgtcttcctttatactgtgaagttacgtgcatcaaagggtgaaacgtataggtgaaaaagagtagacagagattttaaaaagaagaaagaaagaaggggaaaagctataaatacagatatgtataaatgtctattattattaaaacgccgataccgttttaagcaaatgcattctatcgttattataaatgttagttctagctatatctagttcttaccttaaatcggaataaattaatactgtaatgctgctgtgcgtgaaaaagacgatgtttatgttctcatagaagaataaaagacgtggaatgaatccttttaatt

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