ver.2
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Previous release (v1)
2026-10-15 17:55:17, GGRNA : RefSeq release 233 (Jan, 2026)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS NM_001351438 542 bp mRNA linear VRT 23-SEP-2021 DEFINITION Gallus gallus NK2 homeobox 3 (NKX2-3), mRNA. ACCESSION NM_001351438 VERSION NM_001351438.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
Synonym: EDQM3; NKx-2.3
NM_001351438.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001305224 1708 bp mRNA linear VRT 07-AUG-2024 DEFINITION Gallus gallus homeobox A9 (HOXA9), mRNA. ACCESSION NM_001305224 VERSION NM_001305224.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK0137.1. On...
Synonym: HOXA-9
NM_001305224.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001243724 1375 bp mRNA linear VRT 13-OCT-2024 DEFINITION Gallus gallus retina and anterior neural fold homeobox (RAX), mRNA. ACCESSION NM_001243724 VERSION NM_001243724.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
Synonym: cRax; cRax1; cRax2; orx; RAX2; RX1; RX2
NM_001243724.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_205137 1111 bp mRNA linear VRT 19-SEP-2023 DEFINITION Gallus gallus NK2 homeobox 6 (NKX2-6), mRNA. ACCESSION NM_205137 XM_444649 VERSION NM_205137.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from Y10655.1....
Synonym: NKX2.8
NM_205137.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001416664 2738 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus homeobox B9 (HOXB9), mRNA. ACCESSION NM_001416664 XM_001233690 XM_040691973 VERSION NM_001416664.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
NM_001416664.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001277282 938 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus homeobox C9 (HOXC9), mRNA. ACCESSION NM_001277282 XM_423451 VERSION NM_001277282.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
NM_001277282.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001391909 1652 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus VENT homeobox (VENTX), mRNA. ACCESSION NM_001391909 XM_015288825 VERSION NM_001391909.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
NM_001391909.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NR_171275 1742 bp RNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus notochord homeobox (NOTO), transcript variant 3, non-coding RNA. ACCESSION NR_171275 VERSION NR_171275.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
Synonym: CNOT; GNOT1
NR_171275.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_205386 1830 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus sensory organ homeobox (SOHO1), mRNA. ACCESSION NM_205386 VERSION NM_205386.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK0174.1....
Synonym: SOHO-1
NM_205386.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001044668 1054 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus ladybird homeobox 2 (LBX2), mRNA. ACCESSION NM_001044668 XM_428966 VERSION NM_001044668.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
Synonym: LBX3
NM_001044668.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001397959 5239 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus ALX homeobox 4 (ALX4), transcript variant 3, mRNA. ACCESSION NM_001397959 VERSION NM_001397959.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
NM_001397959.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001397958 5253 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus ALX homeobox 4 (ALX4), transcript variant 2, mRNA. ACCESSION NM_001397958 VERSION NM_001397958.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
NM_001397958.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001389306 2078 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus notochord homeobox (NOTO), transcript variant 2, mRNA. ACCESSION NM_001389306 VERSION NM_001389306.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
Synonym: CNOT; GNOT1
NM_001389306.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001396848 2062 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus notochord homeobox (NOTO), transcript variant 1, mRNA. ACCESSION NM_001396848 XM_015286041 VERSION NM_001396848.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference...
Synonym: CNOT; GNOT1
NM_001396848.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001396189 1511 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus motor neuron and pancreas homeobox 1 (MNX1), mRNA. ACCESSION NM_001396189 VERSION NM_001396189.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
Synonym: HB9; HLXB9
NM_001396189.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001005427 2247 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus mesenchyme homeobox 2 (MEOX2), mRNA. ACCESSION NM_001005427 XM_418692 VERSION NM_001005427.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived...
NM_001005427.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204162 5479 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus ALX homeobox 4 (ALX4), transcript variant 1, mRNA. ACCESSION NM_204162 VERSION NM_204162.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
NM_204162.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204765 1931 bp mRNA linear VRT 19-SEP-2023 DEFINITION Gallus gallus mesenchyme homeobox 1 (MEOX1), mRNA. ACCESSION NM_204765 VERSION NM_204765.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF043432.2. ##...
Synonym: GGMOXR1
NM_204765.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_205031 4124 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus NK2 homeobox 3 (NKX2-3), mRNA. ACCESSION NM_205031 XM_015288820 VERSION NM_205031.3 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
Synonym: CNKX-2.3
NM_205031.3 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001199474 2132 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus leucine twenty homeobox (LEUTX), transcript variant 1, mRNA. ACCESSION NM_001199474 XR_026947 VERSION NM_001199474.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference...
Synonym: DBX1
NM_001199474.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204311 1468 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus caudal type homeobox 2 (CDX2), mRNA. ACCESSION NM_204311 VERSION NM_204311.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK0127.1. On...
NM_204311.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001045842 1059 bp mRNA linear VRT 19-SEP-2023 DEFINITION Gallus gallus distal-less homeobox 1 (DLX1), mRNA. ACCESSION NM_001045842 XM_426840 VERSION NM_001045842.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived...
NM_001045842.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001044695 1906 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus SIX homeobox 2 (SIX2), mRNA. ACCESSION NM_001044695 VERSION NM_001044695.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK0163.1....
NM_001044695.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
product="homeobox protein Meis1" /protein_id="NP_001132949.1" /db_xref="CGNC:49389" /db_xref="GeneID:395589" /translation="MAQRYDELPHYGGMEGVGIPTTMYGDPHGARPMRPVHHLNHGPPLHSHQYPHAAHANAMPPAMGASVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDGTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM" misc_feature 371..625 /gene="MEIS1" /note="N-terminal of Homeobox Meis and PKNOX1;...
NM_001139477.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NR_174027 3697 bp RNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus homeobox B1 (HOXB1), transcript variant 2, non-coding RNA. ACCESSION NR_174027 VERSION NR_174027.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived...
Synonym: Ghox-lab; HOXB-1
NR_174027.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NR_174029 2018 bp RNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus leucine twenty homeobox (LEUTX), transcript variant 2, non-coding RNA. ACCESSION NR_174029 XR_001466497 VERSION NR_174029.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The...
Synonym: DBX1
NR_174029.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204896 2208 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus BARX homeobox 2 (BARX2), mRNA. ACCESSION NM_204896 VERSION NM_204896.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000341.1. On...
Synonym: BARX2B
NM_204896.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001030338 1815 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus iroquois homeobox 1 (IRX1), mRNA. ACCESSION NM_001030338 XM_419063 VERSION NM_001030338.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature 480..596 /gene="IRX1" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature 960..1013 /gene="IRX1" /note="Motif in Iroquois-class homeodomain...
NM_001030338.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001305645 2858 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus homeobox A10 (HOXA10), mRNA. ACCESSION NM_001305645 XM_001235692 VERSION NM_001305645.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
NM_001305645.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001305260 1807 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus homeobox C10 (HOXC10), mRNA. ACCESSION NM_001305260 XM_001233805 VERSION NM_001305260.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
NM_001305260.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001398296 3230 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus PBX/knotted 1 homeobox 2 (PKNOX2), transcript variant 2, mRNA. ACCESSION NM_001398296 XM_015297934 VERSION NM_001398296.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa;...misc_feature 743..1000 /gene="PKNOX2" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1325..1339,1343..1345,1403..1405,1421..1423, 1460..1462,1466..1471,1478..1483,1487..1495) /gene="PKNOX2" /note="DNA binding site...
NM_001398296.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001396356 1981 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus NK2 homeobox 1 (NKX2-1), transcript variant 2, mRNA. ACCESSION NM_001396356 XM_025150547 VERSION NM_001396356.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference...
Synonym: NKX2.1; TITF1
NM_001396356.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204616 2121 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus NK2 homeobox 1 (NKX2-1), transcript variant 1, mRNA. ACCESSION NM_204616 XM_015287273 VERSION NM_204616.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
Synonym: NKX2.1; TITF1
NM_204616.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204226 3299 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus PBX/knotted 1 homeobox 2 (PKNOX2), transcript variant 1, mRNA. ACCESSION NM_204226 XM_015297933 VERSION NM_204226.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata;...misc_feature 812..1069 /gene="PKNOX2" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1394..1408,1412..1414,1472..1474,1490..1492, 1529..1531,1535..1540,1547..1552,1556..1564) /gene="PKNOX2" /note="DNA binding site...
NM_204226.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001396064 2699 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus ladybird homeobox 1 (LBX1), mRNA. ACCESSION NM_001396064 XM_025151419 VERSION NM_001396064.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived...
NM_001396064.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001199548 1704 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus NK6 homeobox 2 (NKX6-2), mRNA. ACCESSION NM_001199548 XM_421832 VERSION NM_001199548.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
Synonym: NKX-6.2
NM_001199548.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001398297 3834 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus PBX/knotted 1 homeobox 2 (PKNOX2), transcript variant 3, mRNA. ACCESSION NM_001398297 XM_015297936 VERSION NM_001398297.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa;...misc_feature 1347..1604 /gene="PKNOX2" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1929..1943,1947..1949,2007..2009,2025..2027, 2064..2066,2070..2075,2082..2087,2091..2099) /gene="PKNOX2" /note="DNA binding site...
NM_001398297.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204889 1268 bp mRNA linear VRT 19-SEP-2023 DEFINITION Gallus gallus LIM homeobox 2 (LHX2), mRNA. ACCESSION NM_204889 VERSION NM_204889.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB005882.1. ##Evidence-...
Synonym: LH-2A
NM_204889.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001396031 1619 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus POU class 3 homeobox 1 (POU3F1), mRNA. ACCESSION NM_001396031 VERSION NM_001396031.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
Synonym: Oct-6
NM_001396031.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
DLX3" /note="DLX3 homeodomain containing protein" /codon_start=1 /product="homeobox protein DLX-3" /protein_id="NP_990135.2" /db_xref="CGNC:49390" /db_xref="GeneID:395590" /translation="MSGSFDKKLSSILTDLSGSLSCHASSKDSPTLPESSVTDLGYYSGQHDYYPGQSYGQPVAHYPYPQFNLNAIGAGGTYSPKSDYSYSPSYRQYGHFRDQQLPAQDAVSVKEEPEPEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPAVWDSATHGGAPGRTPLPQPLPYSPSPAFLEEHSPWYHPQSLAAPHQPPAAMHHTSPGPPPNPGAVY" misc_feature 159..395 /gene="DLX3" /note="Homeobox protein distal-less-like N terminal; Region: DLL_N; pfam12413" /db_xref="CDD...
NM_204804.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001044685 1810 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus SIX homeobox 1 (SIX1), mRNA. ACCESSION NM_001044685 VERSION NM_001044685.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
NM_001044685.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001397245 992 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus short stature homeobox (SHOX), mRNA. ACCESSION NM_001397245 VERSION NM_001397245.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
NM_001397245.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001030336 2870 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus iroquois homeobox 2 (IRX2), mRNA. ACCESSION NM_001030336 XM_419062 VERSION NM_001030336.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...gene="IRX2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 491..607 /gene="IRX2" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature 1237 /gene="IRX2" /note="DNA polymerase III subunit gamma/tau; Region...
NM_001030336.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_204137 1842 bp mRNA linear VRT 19-SEP-2023 DEFINITION Gallus gallus NK3 homeobox 2 (NKX3-2), mRNA. ACCESSION NM_204137 VERSION NM_204137.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AB042507.1. ##...
Synonym: BAPX1; NKX-3.2
NM_204137.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001301787 2614 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus cone-rod homeobox (CRX), mRNA. ACCESSION NM_001301787 VERSION NM_001301787.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
Synonym: OTX5
NM_001301787.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001397673 2548 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus PBX homeobox 3 (PBX3), transcript variant 6, mRNA. ACCESSION NM_001397673 VERSION NM_001397673.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
Synonym: Pbx3b
NM_001397673.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001257388 2293 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus LIM homeobox transcription factor 1, alpha (LMX1A), mRNA. ACCESSION NM_001257388 XM_003641657 VERSION NM_001257388.4 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT INFERRED REFSEQ: This record is predicted by genome sequence analysis and is not yet...
NM_001257388.4 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001397674 2566 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus PBX homeobox 3 (PBX3), transcript variant 7, mRNA. ACCESSION NM_001397674 VERSION NM_001397674.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
Synonym: Pbx3b
NM_001397674.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001080890 1681 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus distal-less homeobox 6 (DLX6), mRNA. ACCESSION NM_001080890 XM_001234460 XM_015281592 VERSION NM_001080890.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference...
NM_001080890.2 -
Gallus gallus (chicken) -
NCBI -
UCSC
LOCUS NM_001398146 1581 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus NK2 homeobox 2 (NKX2-2), mRNA. ACCESSION NM_001398146 XM_015283379 VERSION NM_001398146.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
Synonym: NKX-2.2; Nkx2.2
NM_001398146.1 -
Gallus gallus (chicken) -
NCBI -
UCSC
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : https://172.18.8.233:20082/gg/homeobox
lang : en |
div : |
spe : gg |
query_string : homeobox |
format : html |
download :
0.000 | 0.000 | search_start;
1.044 | 1.044 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Gallus gallus (chicken)?to=0&format=json
1.227 | 0.183 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Gallus gallus (chicken)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
1.238 | 0.011 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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