LOCUS       NM_205031               4124 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus NK2 homeobox 3 (NKX2-3), mRNA.
ACCESSION   NM_205031 XM_015288820
VERSION     NM_205031.3
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 4124)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 4124)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4124)
  AUTHORS   Buchberger A, Pabst O, Brand T, Seidl K and Arnold HH.
  TITLE     Chick NKx-2.3 represents a novel family member of vertebrate
            homologues to the Drosophila homeobox gene tinman: differential
            expression of cNKx-2.3 and cNKx-2.5 during heart and gut
            development
  JOURNAL   Mech Dev 56 (1-2), 151-163 (1996)
   PUBMED   8798155
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000232.1.
            
            On Sep 23, 2021 this sequence version replaced NM_205031.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: X97667.1, SRR12888522.137250.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992484 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-514               JAENSK010000232.1  2144922-2145435     c
            515-4124            JAENSK010000232.1  2140753-2144362     c
FEATURES             Location/Qualifiers
     source          1..4124
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="6"
                     /map="6"
     gene            1..4124
                     /gene="NKX2-3"
                     /gene_synonym="CNKX-2.3"
                     /note="NK2 homeobox 3"
                     /db_xref="CGNC:49532"
                     /db_xref="GeneID:107053698"
     exon            1..514
                     /gene="NKX2-3"
                     /gene_synonym="CNKX-2.3"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..1155
                     /gene="NKX2-3"
                     /gene_synonym="CNKX-2.3"
                     /note="NK2 transcription factor related, locus 3"
                     /codon_start=1
                     /product="homeobox protein Nkx-2.3"
                     /protein_id="NP_990362.3"
                     /db_xref="CGNC:49532"
                     /db_xref="GeneID:107053698"
                     /translation="

MMLPSPVTSTPFSVKDILNLEQQQQDPHYGAQLPHHLEHHFHPAACLLAAADGTRFSDGEEEEEEEKLSYLSSVATPGGQADARLSADSYVHAVLRGSCEAPGPGEELDPTARDPKSCALKKPLDAAEKPEEAERPKQRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGGPAAPPPPRRVAVPVLVRDGKPCLGGSQGYSSAYNGPYSYNGFPAYGYGNAASYNPGYGCTYPAGSGGASVQAACSPAAAAGPFVNVGGLGGFGGGGQALHQAAAGPSCSQGALQGIRAW"

     misc_feature    592..762
                     /gene="NKX2-3"
                     /gene_synonym="CNKX-2.3"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            515..4124
                     /gene="NKX2-3"
                     /gene_synonym="CNKX-2.3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcagacccccagcgccgggctaatggaggcaacttagacaggagcaggcgcggcccctcgtctctcggcgctgcccgctccccccgcaccgggcgcggcgctccccgccgagccgcagcccgagcgccgccgggcccccgggactccccggccgctcgcgctgccccgatgatgttaccgagccccgtcacctccacccctttctctgtcaaagacatcctcaacctggagcagcagcagcaggacccgcactatggggcccagctcccgcaccacctggagcaccactttcaccccgccgcctgcctgctggcggccgccgacggcacccgcttctccgacggcgaggaggaagaggaggaggagaagctgtcctacctgagctccgtggcaacgcccggcggccaggcagacgcgcggctctccgccgacagctacgtgcatgccgtgctgcgcggctcctgcgaggctcccggcccgggagaggagctggaccccacggctcgcgacccgaagagctgcgccctgaagaaaccgctggacgccgcggagaagccggaggaggcggagaggccgaagcagcggagtcggaggaagccgcgcgtcctcttctcgcaggcgcaggtcttcgagctggagcggcggttcaagcagcagcgttacctgtcggctccggagcgggagcacctggccagcagcctgaagctcacctccacgcaggtgaagatctggttccagaaccggcgctacaagtgcaagcggcagcggcaggacaagtcgctggagctgggcggccccgcggccccgccgccgccgcgcagggtggccgtgcccgtgctggtccgcgacggcaagccgtgcctgggcggctcgcagggctacagctcggcgtacaacgggccctactcctacaacggcttccccgcctacggctacggcaacgccgcctcctacaaccccggctacggctgcacctacccggcgggcagcggcggggcctcggtgcaagccgcctgcagcccggcggcggccgccggccccttcgtgaacgtgggcggcctggggggcttcggcggcggcgggcaggcgctgcaccaggcggcggcggggccctcctgcagccagggcgcactgcagggcattcgggcctggtagcccgcacgcacttagggccgggagcggaccggcacgacggccccgcggccccgcagcgcccttacgccccgcggactgaaggcggaggggcggtgcggcaggaccccggctctctcccagggccgcggggcggagcggagcggcggaacggaagggaacgggactggacgggacaggacgggccgagcccgcggcggagcgccgccgccccgaggtgccgccgcgacgggcgggccggagctgaccgcgccgcgccatcggagcagcttcgcttgtaaaaagccgacggcgggacccggggctcccgcggcccttctctctatctactctgtatcggtttctgccagcgccagctcgcggagtcagtcaataaaccaggtgcaatatccgccgcccgctcctccttcgcccggcggccggtgcccggcggggctcgcaacgtcgtgcccgcggggcagggcggctcgggcggattgtgagcgtgccaaggcgctgaatggggccgcgcagctcagagccggcccattgtggccgccgggccggcgctgaaaggagccgccgaggaaggtagcgggaataggcgcttattggattcgggaacaaaaggtgtggcagggaggcgagggacaaaggggccccggcgccgagattgacgggccgctttgccccccactgaggcccaggcccggcgctttatgcgcgggggctgcagaaacgtgctgggttttgttcccctttctctgagcgcagggggagatgaggggggtccgcgggccgctgattagggccggccgggccgggcagcctgaatgccggggcattattgctacacgttcaaccattccgctcgggtgcagggggagggggcggacgagaccctcgacgctgcccggcgaccgcttccccccccatccccgtcccgtccggtccgggagcgcgcggccacggccgcggccccacgtcggagccctcgggtctgtgccgctgccgtgcggtgcccggcggacgggcgtccgcgaagcctcgacggcgcggggagcgatcccgcaacgtgtcgatcccgcagcgcgtccgtcccgcagccggcacaggcgcgtcgcgttacgagcgttggcgctgctaaaacgctgcgcgtctgcaccgtgcggtgagcgcgcaccgctcggaaagagccggagaaattttcagctgcagccccgacgctcggcgcggtacggcacggttcggctcggcacggctcgccacggccgtgtcccacggccaccccgaggccgggaggctctggagccgcgctggaagaggatgcggcacgcccagcgattgtttgccgagtggcagcgaggtgtcgcgggagaggaagcccacgctcggctcttggccgtcggagctgagctgtggaggctccgcggtctcgtgggtagaaacaggatagccaagaacaaagataggtaacgacctcccgaagcggcagccccgcgccgaggttggactcggccataggaaagaattgtattcccctctgtgttctgccatattgtcgtttgcagaaataggggacgtgcgtgaattcgtgcctcggcgagcgagatggaggaatggtaaccgcagtacaacctcctccagaataggggtgtgcaaggagagctccccgctcggtgcatcccctccaagtaagtgatggtttgttgggaaccctcctcatccagcagcaccctgaggctctgggcgagatgcacgcgtctgcggccaagccttgagaatgggcactcaaacagagcaaaggggcacatggagaccctactgacctacacagcggtgccatgcagcaacggcgttgtggagcaccaacagcaccaagcattgccataggcgtgggtgtgtagtattgtgggaggttctggatgtccaccatcgtgatcccctctgctaggatacatcccagctgtcccaccagcatagctcaggggggagggacccctcggcatctctctcacccaaggccccccagcagatggggaggacagagcagcacagggtgagctgcgagcagggcggcggaagtgaagcattctgaagaggaggaacagccggtggtggtgggagggaggtgatgggagactgcagattggccaagcagcccaaggaggggacacacaatggggggaagtggctgcgttgccgtgctggaagcggtgcctgcccatgacgtacctcatcccatcgcgccctgcgtgaggccatgtctgcgatgtgctgctgggacccataatgtgtggtgctgcagcggtggtggtggggccagaggggtgtcggggaaggagaaagccgtggccaagggccagaggtgtttcttcctggtccaaaaggcgaattgactcatttgggaatcagagagggaaagcgctgattgattctagacagggcctaaaagccctacaaagcctaaaacgagtgctggcctaaagtaaaggagggcttgggtgaggcagccgggcttgagccatcacacctaaggtccaccttgtgcgtgggctcaggttttgatttctgttcacttttcctggctgaggatgagccatgagcagctctgtgcagcagctgagcagctcccgggaaaggctctcacatcccatcacagccgcattcctatggcctctctgtcacactcaggatcacataggagcagcgtggatccatatgaagcaccacagacgtgctctgttttcctctccttccctgacaacttttcctgtttctcctttccactccctgtggcacagcagagaccgggcacctggggacctgcagctgcactcagtgctcgggggggatcatgctgggagcatcccgaagtgcagcaaggaattgttatctcagcgctggagagtgctgaggaagctgtggccagccgtggagcaggtaaatatattaaaatgtcaataaagcccattgctgtgcagctcccacta

//