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2026-10-10 04:46:35, GGRNA : RefSeq release 233 (Jan, 2026)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Danio rerio iroquois homeobox 5b (irx5b), mRNA. (1231 bp)
LOCUS NM_001001405 1231 bp mRNA linear VRT 04-DEC-2022 DEFINITION Danio rerio iroquois homeobox 5b (irx5b), mRNA. ACCESSION NM_001001405 VERSION NM_001001405.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 407..523 /gene="irx5b" /gene_synonym="iro5b; ziro5b" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature 836..889 /gene="irx5b" /gene_synonym="iro5b; ziro5b" /note="Motif in...
Synonym: iro5b; ziro5b
NM_001001405.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK2 homeobox 4a (nkx2.4a), transcript variant 1, mRNA. (1639 bp)
LOCUS NM_0066 1639 bp mRNA linear VRT 08-OCT-2023 DEFINITION Danio rerio NK2 homeobox 4a (nkx2.4a), transcript variant 1, mRNA. ACCESSION NM_0066 XM_679993 XM_702667 XM_702669 VERSION NM_0066.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC153953.1. On or before Dec...
Synonym: fi48a12; wu:fi48a12; zgc:171531
NM_001111166.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio GS homeobox 1 (gsx1), mRNA. (1401 bp)
LOCUS NM_001012251 1401 bp mRNA linear VRT 07-MAY-2024 DEFINITION Danio rerio GS homeobox 1 (gsx1), mRNA. ACCESSION NM_001012251 VERSION NM_001012251.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY486348.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: gsh1; im:7138106; zgc:110817
NM_001012251.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio even-skipped homeobox 2 (evx2), mRNA. (3334 bp)
LOCUS NM_131232 3334 bp mRNA linear VRT 04-DEC-2023 DEFINITION Danio rerio even-skipped homeobox 2 (evx2), mRNA. ACCESSION NM_131232 VERSION NM_131232.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC057443.1. On Jan 25, 2004 this sequence version replaced NM_131232.1....
Synonym: Evx-2
NM_131232.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SIX homeobox 9 (six9), mRNA. (794 bp)
LOCUS NM_001130608 794 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 9 (six9), mRNA. ACCESSION NM_001130608 XM_684623 VERSION NM_001130608.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC163024.1. On May 28, 2009 this sequence version replaced XM...
Synonym: si:dkey-149j18.3
NM_001130608.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio POU class 4 homeobox 4 (pou4f4), mRNA. (2330 bp)
LOCUS NM_001080058 2330 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio POU class 4 homeobox 4 (pou4f4), mRNA. ACCESSION NM_001080058 XM_695754 VERSION NM_001080058.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC128835.1. On Mar 11, 2007 this sequence version...
Synonym: zgc:158291
NM_001080058.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio caudal type homeobox 1a (cdx1a), mRNA. (2245 bp)
LOCUS NM_212836 2245 bp mRNA linear VRT 28-SEP-2024 DEFINITION Danio rerio caudal type homeobox 1a (cdx1a), mRNA. ACCESSION NM_212836 VERSION NM_212836.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC115217.1. On Mar 25, 2007 this sequence version replaced NM_212836.2....
Synonym: cdx2
NM_212836.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio H6 family homeobox 4 (hmx4), mRNA. (1446 bp)
LOCUS NM_001045371 1446 bp mRNA linear VRT 08-JUN-2024 DEFINITION Danio rerio H6 family homeobox 4 (hmx4), mRNA. ACCESSION NM_001045371 VERSION NM_001045371.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC122454.1. Publication Note: This RefSeq record includes a subset of...
Synonym: Hmx1; soho; wu:fc21b03; zgc:154104
NM_001045371.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SIX homeobox 2b (six2b), mRNA. (966 bp)
LOCUS NM_001128734 966 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 2b (six2b), mRNA. ACCESSION NM_001128734 XM_689724 VERSION NM_001128734.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 966) AUTHORS Ogawa Y, Shiraki T, Kojima D and Fukada Y. TITLE Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish JOURNAL Proc Biol Sci 282 (1812), 20150659 (2015) PUBMED 26180064...
Synonym: zgc:195089; zgc:195096
NM_001128734.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio prospero homeobox 2 (prox2), mRNA. (2435 bp)
LOCUS NM_001128292 2435 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio prospero homeobox 2 (prox2), mRNA. ACCESSION NM_001128292 XM_001919487 VERSION NM_001128292.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF517402.2. On Sep 16, 2008 this sequence version...
NM_001128292.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK2 homeobox 4a (nkx2.4a), transcript variant 2, mRNA. (1350 bp)
LOCUS NM_001160384 1350 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio NK2 homeobox 4a (nkx2.4a), transcript variant 2, mRNA. ACCESSION NM_001160384 XM_001923297 XM_001923299 XM_001923300 VERSION NM_001160384.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
Synonym: fi48a12; wu:fi48a12; zgc:171531
NM_001160384.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SIX homeobox 6a (six6a), mRNA. (1317 bp)
LOCUS NM_201105 1317 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 6a (six6a), mRNA. ACCESSION NM_201105 VERSION NM_201105.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1317) AUTHORS Ogawa Y, Shiraki T, Kojima D and Fukada Y. TITLE Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish JOURNAL Proc Biol Sci 282 (1812), 20150659 (2015) PUBMED 26180064...
Synonym: Six6; zgc:63871
NM_201105.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio iroquois homeobox 4a (irx4a), mRNA. (2101 bp)
LOCUS NM_205698 2101 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio iroquois homeobox 4a (irx4a), mRNA. ACCESSION NM_205698 VERSION NM_205698.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii...contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 742..858 /gene="irx4a" /gene_synonym="zgc:77362; ziro4a" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 322..561 /gene="irx4a" /gene_synonym="zgc:77362; ziro4a" /inference="alignment:...
Synonym: zgc:77362; ziro4a
NM_205698.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C13b (hoxc13b), mRNA. (1582 bp)
LOCUS NM_131546 1582 bp mRNA linear VRT 12-JAN-2025 DEFINITION Danio rerio homeobox C13b (hoxc13b), mRNA. ACCESSION NM_131546 VERSION NM_131546.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC139597.1. On Apr 22, 2007 this sequence version replaced NM_131546.1....
Synonym: hoxf13
NM_131546.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio muscle segment homeobox 1a (msx1a), mRNA. (1088 bp)
LOCUS NM_131273 1088 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio muscle segment homeobox 1a (msx1a), mRNA. ACCESSION NM_131273 VERSION NM_131273.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from U50563.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: cb435; id:ibd5099; msh-E; mshE; msx1; msxe; zgc:111928
NM_131273.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK2 homeobox 2b (nkx2.2b), mRNA. (1584 bp)
LOCUS NM_001007782 1584 bp mRNA linear VRT 05-OCT-2024 DEFINITION Danio rerio NK2 homeobox 2b (nkx2.2b), mRNA. ACCESSION NM_001007782 XM_696524 VERSION NM_001007782.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC091555.1. On or before Jul 6, 2005 this sequence version...
NM_001007782.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NK2 homeobox 1 (nkx2.1), mRNA. (1773 bp)
LOCUS NM_131776 1773 bp mRNA linear VRT 07-DEC-2024 DEFINITION Danio rerio NK2 homeobox 1 (nkx2.1), mRNA. ACCESSION NM_131776 VERSION NM_131776.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF321112.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: nk2.1b; nkx2.1b; nkx2.4b; titf1b; wu:fc31g10
NM_131776.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox C12a (hoxc12a), mRNA. (926 bp)
LOCUS NM_001110759 926 bp mRNA linear VRT 12-JAN-2025 DEFINITION Danio rerio homeobox C12a (hoxc12a), mRNA. ACCESSION NM_001110759 XM_685980 VERSION NM_001110759.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC162849.1. On Sep 9, 2008 this sequence version replaced XM...
Synonym: si:dkey-81p22.1
NM_001110759.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio homeobox and leucine zipper encoding b (homezb), mRNA. (2680 bp)
LOCUS NM_001130784 2680 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio homeobox and leucine zipper encoding b (homezb), mRNA. ACCESSION NM_001130784 XM_689495 VERSION NM_001130784.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC163532.1. On Aug 6, 2008 this...
Synonym: fk11d03; wu:fk11d03
NM_001130784.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SIX homeobox 3a (six3a), mRNA. (1914 bp)
LOCUS NM_131362 1914 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 3a (six3a), mRNA. ACCESSION NM_131362 VERSION NM_131362.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF030280.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: six3; six3.1; wu:fc10a08
NM_131362.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio iroquois homeobox 2a (irx2a), mRNA. (2239 bp)
LOCUS NM_201057 2239 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio iroquois homeobox 2a (irx2a), mRNA. ACCESSION NM_201057 VERSION NM_201057.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii...; other site" /db_xref="CDD:238039" misc_feature 506..622 /gene="irx2a" /gene_synonym="Irx2; zgc:65872; zgc:77209; ziro2a" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 359..761 /gene="irx2a" /gene_synonym="Irx2; zgc:65872; zgc:77209; ziro2a" /...
Synonym: Irx2; zgc:65872; zgc:77209; ziro2a
NM_201057.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio mix-type homeobox gene 2 (mxtx2), mRNA. (1367 bp)
LOCUS NM_001079816 1367 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio mix-type homeobox gene 2 (mxtx2), mRNA. ACCESSION NM_001079816 NM_131559 VERSION NM_001079816.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC115163.1. On Dec 20, 2007 this sequence version...
Synonym: mtx2; zgc:136526
NM_001079816.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SIX homeobox 7 (six7), mRNA. (3994 bp)
LOCUS NM_131354 3994 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 7 (six7), mRNA. ACCESSION NM_131354 XM_682110 VERSION NM_131354.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC064701.1. On or before Jul 6, 2005 this sequence version replaced XM...
NM_131354.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio shox homeobox 2 (shox2), mRNA. (1639 bp)
LOCUS NM_201196 1639 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio shox homeobox 2 (shox2), mRNA. ACCESSION NM_201196 VERSION NM_201196.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC056324.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: zgc:65884; zgc:77344
NM_201196.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio BarH-like homeobox 2 (barhl2), mRNA. (1721 bp)
LOCUS NM_205740 1721 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio BarH-like homeobox 2 (barhl2), mRNA. ACCESSION NM_205740 XM_001336612 VERSION NM_205740.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY145141.1. On Feb 21, 2008 this sequence version replaced XM...
Synonym: B-H2; wu:fq39g04; zgc:113948
NM_205740.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio LIM homeobox 1b (lhx1b), mRNA. (1679 bp)
LOCUS NM_131207 1679 bp mRNA linear VRT 24-NOV-2024 DEFINITION Danio rerio LIM homeobox 1b (lhx1b), mRNA. ACCESSION NM_131207 VERSION NM_131207.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF001299.1. ##Evidence-Data-START## Transcript exon combination :: AF001299.1,...
Synonym: lim6
NM_131207.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio paired related homeobox 1b (prrx1b), mRNA. (2818 bp)
LOCUS NM_200050 2818 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio paired related homeobox 1b (prrx1b), mRNA. ACCESSION NM_200050 VERSION NM_200050.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC064671.1. Publication Note: This RefSeq record includes a subset of...
Synonym: fa97b09; wu:fa97b09; zgc:101095; zgc:64199
NM_200050.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio GS homeobox 2 (gsx2), mRNA. (1292 bp)
LOCUS NM_001025512 1292 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio GS homeobox 2 (gsx2), mRNA. ACCESSION NM_001025512 NM_001130724 XM_684476 VERSION NM_001025512.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC115063.1. On or before Jan 10, 2013 this sequence...
Synonym: gsh2; si:dkey-97c6.1; zgc:136270
NM_001025512.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio Unc4.1 homeobox (C. elegans) (uncx4.1), mRNA. (1958 bp)
LOCUS NM_001020780 1958 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio Unc4.1 homeobox (C. elegans) (uncx4.1), mRNA. ACCESSION NM_001020780 VERSION NM_001020780.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC116499.1. On May 21, 2006 this sequence version replaced...
Synonym: uncx
NM_001020780.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio cut-like homeobox 1b (cux1b), mRNA. (2495 bp)
LOCUS NM_001003514 2495 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio cut-like homeobox 1b (cux1b), mRNA. ACCESSION NM_001003514 VERSION NM_001003514.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC075748.1. ##Evidence-Data-START## Transcript exon combination ::...
Synonym: cutl1; id:ibd1033; zgc:86612
NM_001003514.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ventrally expressed dharma/bozozok antagonist (ved), mRNA. (1044 bp)
and caudal-related genes in zebrafish posterior body formation JOURNAL Dev Biol 279 (1), 125-141 (2005) PUBMED 15708563 REFERENCE 8 (bases 1 to 1044) AUTHORS Gilardelli CN, Pozzoli O, Sordino P, Matassi G and Cotelli F. TITLE Functional and hierarchical interactions among zebrafish vox/vent homeobox genes JOURNAL Dev Dyn 230 (3), 494-508 (2004) PUBMED 15188434 REFERENCE 9 (bases 1 to 1044) AUTHORS Furthauer M, Van Celst J, Thisse C and Thisse B. TITLE Fgf signalling controls the dorsoventral patterning of the zebrafish embryo JOURNAL Development 131 (12), 2853-2864 (2004) PUBMED 15151985...
Synonym: cb675
NM_183074.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio basic helix-loop-helix family, member e23 (bhlhe23), mRNA. (1574 bp)
Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary JOURNAL Elife 11, e76014 (2022) PUBMED 35588359 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1574) AUTHORS Guo R, Ge K, Wang Y, Lu M, Li F, Tian L, Gan L and Sheng D. TITLE LIM Homeobox 4 (lhx4) regulates retinal neural differentiation and visual function in zebrafish JOURNAL Sci Rep 11 (1), 1977 (2021) PUBMED 33479361 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 1574) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino...
Synonym: bhlhb4; zgc:111964
NM_001030133.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio calmodulin 1a (calm1a), mRNA. (1597 bp)
formation JOURNAL Mol Biol Cell 28 (7), 875-882 (2017) PUBMED 28148652 REFERENCE 4 (bases 1 to 1597) AUTHORS Wu M, Wu D, Wang C, Guo Z, Li B and Zuo Z. TITLE Hexabromocyclododecane exposure induces cardiac hypertrophy and arrhythmia by inhibiting miR-1 expression via up-regulation of the homeobox gene Nkx2.5 JOURNAL J Hazard Mater 302, 304-313 (2016) PUBMED 26476318 REFERENCE 5 (bases 1 to 1597) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E,...
Synonym: CaMbeta; sb:cb617; wu:fb08d09; wu:fb69c08; wu:fj34a08; zgc:63926
NM_213351.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio calmodulin 2b, (phosphorylase kinase, delta) (calm2b), mRNA. (1228 bp)
T Cell Response JOURNAL Cell Rep 14 (11), 2733-2744 (2016) PUBMED 26972015 REFERENCE 5 (bases 1 to 1228) AUTHORS Wu M, Wu D, Wang C, Guo Z, Li B and Zuo Z. TITLE Hexabromocyclododecane exposure induces cardiac hypertrophy and arrhythmia by inhibiting miR-1 expression via up-regulation of the homeobox gene Nkx2.5 JOURNAL J Hazard Mater 302, 304-313 (2016) PUBMED 26476318 REFERENCE 6 (bases 1 to 1228) AUTHORS Maugars G and Dufour S. TITLE Demonstration of the Coexistence of Duplicated LH Receptors in Teleosts, and Their Origin in Ancestral Actinopterygians JOURNAL PLoS One 10 (8),...
Synonym: calm2; cb169; zgc:64036
NM_214736.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio stathmin-like 4 (stmn4), mRNA. (1029 bp)
Liu,S., Chen,Y., Yin,Y., Liu,T. and Zhou,J. TITLE Expression of ventral diencephalon-enriched genes in zebrafish JOURNAL Dev Dyn 239 (12), 3368-3379 (2010) PUBMED 21061380 REMARK GeneRIF: Data revealed that expression of DNA binding inhibitor 3, early B cell factor 2, Ebf3, Iroquois related homeobox 1, Kruppel-like factor 7 , mab-21-like 1 , fatty acid binding protein 7 and stathmin-like 4,were enriched in the diencephalon of zebrafish. REFERENCE 7 (bases 1 to 1029) AUTHORS Sundstrom,G., Dreborg,S. and Larhammar,D. TITLE Concomitant duplications of opioid peptide and receptor genes before the...
Synonym: wu:fj44e06; zgc:73243
NM_213401.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio metaxin 2 (mtx2), mRNA. (1435 bp)
MR, Wilson C and Postlethwait JH. TITLE Assignment of zebrafish genetic linkage groups to chromosomes JOURNAL Cytogenet Genome Res 114 (2), 155-162 (2006) PUBMED 16825768 REFERENCE 9 (bases 1 to 1435) AUTHORS Bruce AE, Howley C, Dixon Fox M and Ho RK. TITLE T-box gene eomesodermin and the homeobox-containing Mix/Bix gene mtx2 regulate epiboly movements in the zebrafish JOURNAL Dev Dyn 233 (1), 105-114 (2005) PUBMED 15765511 REMARK GeneRIF: knockdown leads to an inhibition of epiboly in gastrulation REFERENCE 10 (bases 1 to 1435) AUTHORS Adolph KW. TITLE The zebrafish metaxin 3 gene (mtx3):...
Synonym: fc02d09; wu:fc02d09
NM_212575.2 - Danio rerio (zebrafish) - NCBI - UCSC

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Redirect URI : https://172.18.8.233:20082/dr/homeobox
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0.356 | 0.168 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.359 | 0.004 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]