LOCUS       NM_001003514            2495 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio cut-like homeobox 1b (cux1b), mRNA.
ACCESSION   NM_001003514
VERSION     NM_001003514.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2495)
  AUTHORS   Kudoh T, Tsang M, Hukriede NA, Chen X, Dedekian M, Clarke CJ, Kiang
            A, Schultz S, Epstein JA, Toyama R and Dawid IB.
  TITLE     A gene expression screen in zebrafish embryogenesis
  JOURNAL   Genome Res 11 (12), 1979-1987 (2001)
   PUBMED   11731487
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC075748.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC075748.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505370, SAMEA3505375
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="15"
                     /map="15"
     gene            1..2495
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /note="cut-like homeobox 1b"
                     /db_xref="GeneID:445120"
                     /db_xref="ZFIN:ZDB-GENE-040801-260"
     exon            1..74
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..2030
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /note="cut-like 1"
                     /codon_start=1
                     /product="cut-like homeobox 1b"
                     /protein_id="NP_001003514.1"
                     /db_xref="GeneID:445120"
                     /db_xref="ZFIN:ZDB-GENE-040801-260"
                     /translation="

MAASAMSMCQFWKRFDLVQLQRELDSTATLLASRQDDSEQSRKKLIDQSREFKKNTPEDLRKLVAPLLKSFQAEIDALSKRSKESETAFLNVYKRLIDVPDPVPVLELSQQLHQKVQRMNDIDTENQKLRETLEEYNKEFAEVKNQEVTIKTLKEKIREYEQSMKNQAENLALEKQQQIHKDYTEKERRLQESQESLVCKLQEAELKAQTLQTALERTQTELFDLKTKNDEESTAKADEIDMVMIDLERANQRAEAAERAAEALREQLMLAGKSSQLPTRTDETPYADECVDLVPRSSLEAELSAKEREMLQLVEDVQRLQASLSALRENTHTQISQLQQQLTMKTTALTQLEEKLQAQADYEEVKKEFSILKSMEFGPRDGSAVQDSSKPLEVLLLEKNRSLQSENASLRIANTELSGRYACLQMEFSTAVQTTSDQKELILKLEQDLSTIQTMSRPDAEGADTSAVMRECVPDPIKEATALFSSISGSPQADQGQMDSLLSIISSQRERFRSRNQELEVANSSLQQTLQALQSELDSLRADNIKLYEKIKFLQSYPTRAGDSDDTVMRYSSQYEERLDPFSSFSKKERQRRYQSLSPWDKATLSLGRVILSNKTARTIAFFYTLMLHCLVFLVLYKAAWSESIGRDCAAFCAKKYSDHLHRFHEDGDLLQ"

     misc_feature    <330..1145
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /note="chromosome segregation protein SMC, common
                     bacterial type; Region: SMC_prok_B; TIGR02168"
                     /db_xref="CDD:274008"
     misc_feature    1281..1940
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /note="CASP C terminal; Region: CASP_C; pfam08172"
                     /db_xref="CDD:462392"
     exon            75..185
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            186..233
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            234..312
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            313..450
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            451..574
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            575..651
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            652..718
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            719..767
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            768..872
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            873..1061
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1120
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1169
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1266
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1267..1394
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1467
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1468..1574
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1691
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1775
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1832
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1833..1913
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1914..1978
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
     exon            1979..2464
                     /gene="cux1b"
                     /gene_synonym="cutl1; id:ibd1033; zgc:86612"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gaggaagaaagatggcggccagcgcgatgtcgatgtgtcagttttggaaacgctttgacttggttcagttgcagagagagctagacagcactgccacactactggccagccggcaggatgacagcgagcagtccaggaaaaagctcattgaccagagccgtgaatttaagaagaacacgccagaggatctgaggaagcttgtggctccgctgctgaagagttttcaggctgagattgatgcgttgagtaagaggagtaaagagtcagagacggcctttctaaatgtctataaacggctgatcgacgtgccagatccagtaccggtgttggagttgtcacagcagctgcatcagaaagttcagcggatgaatgacattgatacagagaaccagaaactgcgtgagacgctcgaggaatacaacaaagagtttgctgaggtcaagaaccaggaggtcaccattaaaacactgaaagagaagatcagagagtacgagcagagtatgaagaaccaggcagagaatctggctttggaaaaacaacagcagattcataaagactacacagagaaagagaggaggttacaggagtcacaggagtcactggtgtgtaaactacaggaagctgaactcaaagcccagaccctgcagacagcacttgagcgaacgcagacggagctgtttgatctgaagacaaaaaatgacgaagagtcaacggcaaaggctgatgagattgacatggtgatgatcgatttggagcgagccaatcagagagcagaagccgctgagagggcagctgaagctcttcgagaacagctcatgcttgcgggcaaatcaagccagctgccaacacgcactgacgaaactccatatgcggatgagtgtgtggatctggtgccgcgctccagtctggaggctgagctcagtgcgaaggagcgtgagatgcttcagctggtggaggatgttcagagactgcaggccagcctctccgctctcagagaaaacacacacacacagatcagccagttacagcagcagctcaccatgaagaccactgcactcacgcaactagaggaaaagctgcaggcgcaggcagactatgaggaggtcaagaaagagttcagtatcctgaagtcgatggagtttggtccgcgtgacggctcggcagtgcaggattctagtaaaccgctagaggtgttactgctggagaagaaccgcagcctgcagtctgagaacgcgtctctgcgcatcgctaacactgagctgagtggccgctatgcgtgtcttcagatggagttttccactgctgtgcagaccacctcagatcagaaagagctcatcctcaaactggaacaggatctcagcaccatccagaccatgtcacgacctgatgctgagggtgcagacaccagtgcggtgatgcgtgagtgcgtccctgatcccattaaggaggccacagcactgttctcaagtataagcggctctcctcaggccgatcagggtcagatggactctctgctgtccatcatctccagtcagagggagagatttcgctctcgtaaccaggagctggaggtggcgaacagctctctacagcagaccctacaggctcttcagagtgagctggacagtctgcgggccgacaacatcaagctctacgagaagatcaagttcctccagagctatcctaccagagctggagacagcgatgatacagtgatgcgttactcgtctcagtatgaggagaggctcgaccccttctcctccttcagcaaaaaggagcgtcagaggagatatcagagcctaagcccatgggacaaggccacgcttagtctgggacgtgtgatcctctccaataagacggccagaaccattgcgttcttctatacgctgatgctgcactgcctcgtcttcctggtgctgtataaagccgcctggagtgagagtatcggccgcgactgtgctgcattttgtgcaaagaagtactcggaccatctgcaccggttccatgaagacggagacttgttgcagtagcagcttctgtccactaggtggcgctagatgcacacacgtcatgcttttatgacatgattatcatagattgattgtcattgcgttactagtgcagggaccaagttttctttggttgtattctgggttaattattattgaaactagaaggtgtaaagatgcaatgatgtttatttacaatgttttgctggagattttttctttactatttcatttgactggctcaaaacaatcagctttaacactcctgagggtgatctattttgctcctccatagcagattctaccattcatctgaagcatatacctctggttatggttgatttaaagggttagacacaaagcatctgacacaatatctctctctttctatacatatattcagctgataggggtttggtggatttagtctctttaaattaaatgcacgttttcagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

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