ver.2
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Previous release (v1)
2025-10-09 13:11:25, GGRNA : RefSeq release 232 (Sep, 2025)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS NM_001106302 1362 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus H6 family homeobox 3 (Hmx3), mRNA. ACCESSION NM_001106302 XM_001054019 XM_219327 VERSION NM_001106302.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001108880 1372 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus BARX homeobox 1 (Barx1), mRNA. ACCESSION NM_001108880 XM_001056986 XM_344575 VERSION NM_001108880.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473977.1....
LOCUS NM_017339 1060 bp mRNA linear ROD 23-JUN-2025 DEFINITION Rattus norvegicus ISL LIM homeobox 1 (Isl1), mRNA. ACCESSION NM_017339 VERSION NM_017339.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from S69329.1. On Apr 28, 2006 this sequence...
Splign:2.1.0" misc_feature 33..35 /gene="Hoxc5" /note="upstream in-frame stop codon" CDS 75..743 /gene="Hoxc5" /codon_start=1 /product="homeobox protein Hox-C5" /protein_id="NP_001101586.1" /db_xref="GeneID:315341" /db_xref="RGD:1307584" /translation="...inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2734) AUTHORS Moon SM, Ahn MY, Kwon SM, Kim SA, Ahn SG and Yoon JH. TITLE Homeobox C5 expression is associated with the progression of 4-nitroquinoline 1-oxide-induced rat tongue carcinogenesis JOURNAL J Oral Pathol Med...
LOCUS NM_001109244 816 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus ladybird homeobox 2 (Lbx2), mRNA. ACCESSION NM_001109244 XM_001072452 XM_575575 VERSION NM_001109244.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001109166 2000 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus T-cell leukemia, homeobox 1 (Tlx1), mRNA. ACCESSION NM_001109166 XM_001057997 XM_574674 VERSION NM_001109166.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001024889 829 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 4G (Rhoxf4g), mRNA. ACCESSION NM_001024889 XM_233314 VERSION NM_001024889.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058652.1. On Jun...
LOCUS NM_001127653 1468 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 6 (Nkx2-6), mRNA. ACCESSION NM_001127653 XM_001068954 XM_344429 VERSION NM_001127653.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC160896.1....
gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /note="homeo box A4" /db_xref="GeneID:100912525" /db_xref="RGD:2814" exon 1..515 /gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /inference="alignment:Splign:2.1.0" CDS 5..862 /gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /note="homeobox protein Hox-A4-like; Homeobox gene A4; homeobox protein R2; homeobox A4-like" /codon_start=1 /product="homeobox protein Hox-A4" /protein_id="NP_077326.1" /db_xref="GeneID:100912525" /db_xref="RGD:2814" /translation="...
Rhoxf5" /gene_synonym="Pem; Rhox5" /note="upstream in-frame stop codon" exon 94..175 /gene="Rhoxf5" /gene_synonym="Pem; Rhox5" /inference="alignment:Splign:2.1.0" CDS 97..723 /gene="Rhoxf5" /gene_synonym="Pem; Rhox5" /note="homeobox protein Pem; reproductive homeobox on chromosome X 5; placenta and embryonic expression protein; placentae and embryos oncofetal; Homeobox gene Pem; reproductive homeobox 5" /codon_start=1 /product="homeobox protein Rhox5" /protein_id="NP_071511.2" /db_xref="GeneID:24631" /db_xref="RGD:3295" /translation="...
LOCUS NM_001107594 1472 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 3 (Nkx2-3), mRNA. ACCESSION NM_001107594 XM_001056222 XM_219880 VERSION NM_001107594.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473986.1....
LOCUS NM_023951 567 bp mRNA linear ROD 02-APR-2025 DEFINITION Rattus norvegicus SEBOX homeobox (Sebox), mRNA. ACCESSION NM_023951 VERSION NM_023951.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF284338.1. ##Evidence-Data-START## RNAseq...
LOCUS NM_001109455 1881 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK6 homeobox 3 (Nkx6-3), mRNA. ACCESSION NM_001109455 XM_001062306 VERSION NM_001109455.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473970.2. On Oct...
LOCUS NM_001433273 718 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 9 like 1 (Rhoxf9l1), transcript variant 2, mRNA. ACCESSION NM_001433273 VERSION NM_001433273.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_001109106 1148 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus HESX homeobox 1 (Hesx1), mRNA. ACCESSION NM_001109106 XM_001057775 XM_573850 VERSION NM_001109106.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474067.2....
LOCUS NM_001433272 850 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 9 like 1 (Rhoxf9l1), transcript variant 1, mRNA. ACCESSION NM_001433272 XM_006257483 VERSION NM_001433272.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference...
LOCUS NM_001024874 829 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 9 (Rhoxf9), mRNA. ACCESSION NM_001024874 XM_216470 VERSION NM_001024874.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058656.1....
map="3q23" gene 1..1830 /gene="Hoxd1" /note="homeo box D1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" exon 1..756 /gene="Hoxd1" /inference="alignment:Splign:2.1.0" misc_feature 60..62 /gene="Hoxd1" /note="upstream in-frame stop codon" CDS 105..1091 /gene="Hoxd1" /codon_start=1 /product="homeobox protein Hox-D1" /protein_id="NP_001099354.1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" /translation="...
LOCUS NM_001025776 738 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 8 (Rhoxf8), mRNA. ACCESSION NM_001025776 XM_578961 VERSION NM_001025776.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058655.1. On Jul...
LOCUS NM_001135607 908 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 3 (Rhoxf3), mRNA. ACCESSION NM_001135607 VERSION NM_001135607.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058651.1. ##Evidence-Data-...
LOCUS NM_001109546 2814 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus visual system homeobox 1 (Vsx1), mRNA. ACCESSION NM_001109546 XM_001071714 VERSION NM_001109546.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474050.2. On...
LOCUS NM_001106732 1078 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 8 (Nkx2-8), mRNA. ACCESSION NM_001106732 XM_001079326 XM_234179 VERSION NM_001106732.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473947.1....
gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="homeobox A2" /db_xref="GeneID:103690123" /db_xref="RGD:11468112" exon 1..563 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /inference="alignment:Splign:2.1.0" misc_feature 80..82 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="upstream in-frame stop codon" CDS 185..1303 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="Homeobox gene A11; Homeobox gene A2; homeobox protein Hox-1.11; homeo box A2" /codon_start=1 /product="...
Synonym: hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A
NM_012581.3 -
Rattus norvegicus (Norway rat) -
NCBI -
UCSC -
RefEx(expression)
LOCUS NM_001129878 2253 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus homeobox A11 (Hoxa11), mRNA. ACCESSION NM_001129878 XM_001059505 VERSION NM_001129878.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474011.2. On Jul...
FEATURES Location/Qualifiers source 1..1228 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="7" /map="7q36" gene 1..1228 /gene="Hoxc8" /gene_synonym="Hox3r4" /note="homeobox C8" /db_xref="GeneID:24460" /db_xref="RGD:2821" CDS 1..729 /gene="Hoxc8" /gene_synonym="Hox3r4" /note="homeobox protein R4; Homeobox gene C8; homeo box C8" /codon_start=1 /product="homeobox protein Hox-C8" /protein_id="NP_001170797.2" /db_xref="GeneID:24460" /db_xref="RGD:2821" /translation="...
alignment:Splign:2.1.0" misc_feature 1432..1434 /gene="Hoxa5" /note="upstream in-frame stop codon" CDS 1492..2637 /gene="Hoxa5" /note="hox-1.3; homeobox protein Hox-1.3; homeobox protein Hox-A5-like" /codon_start=1 /product="homeobox protein Hox-A5" /protein_id="NP_077365.1" /db_xref="GeneID...ORIGIN // REFERENCE 1 (bases 1 to 2938) AUTHORS Kato,H., Ario,T., Kishida,T., Tadano,M., Osawa,S., Maeda,Y., Takakura,H. and Izawa,T. TITLE Homeobox A5 and C10 genes modulate adaptation of brown adipose tissue during exercise training in juvenile rats JOURNAL Exp Physiol 106 (2), 463-474 (2021)...
END## FEATURES Location/Qualifiers source 1..843 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="7" /map="7q36" gene 1..843 /gene="Hoxc12" /note="homeo box C12" /db_xref="GeneID:300262" /db_xref="RGD:1310539" CDS 1..843 /gene="Hoxc12" /codon_start=1 /product="homeobox protein Hox-C12" /protein_id="NP_001100266.1" /db_xref="GeneID:300262" /db_xref="RGD:1310539" /translation="...
LOCUS NM_001077674 2141 bp mRNA linear ROD 27-APR-2025 DEFINITION Rattus norvegicus H2.0-like homeobox (Hlx), mRNA. ACCESSION NM_001077674 XM_001064868 XM_344184 VERSION NM_001077674.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC127513.1....
LOCUS NM_001037581 714 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 10 (Rhoxf10), mRNA. ACCESSION NM_001037581 VERSION NM_001037581.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0121.1. On Aug...
LOCUS NM_001024873 864 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 11 (Rhoxf11), mRNA. ACCESSION NM_001024873 XM_233320 VERSION NM_001024873.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="10" /map="10q26" gene 1..973 /gene="Hoxb8" /gene_synonym="Hox2r1a" /note="homeo box B8" /db_xref="GeneID:24457" /db_xref="RGD:1586211" CDS 1..732 /gene="Hoxb8" /gene_synonym="Hox2r1a" /note="Hox2.4 homeobox homolog; homeobox gene B8; homeobox protein R1a" /codon_start=1 /product="homeobox protein Hox-B8" /protein_id="NP_001178578.1" /db_xref="GeneID:24457" /db_xref="RGD:1586211" /translation="...
LOCUS NR_132638 465 bp RNA linear ROD 03-JUN-2025 DEFINITION Rattus norvegicus LIM homeobox 1, opposite strand (Lhx1os), long non-coding RNA. ACCESSION NR_132638 VERSION NR_132638.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0110.1. Sequence Note:...
LOCUS NM_001024901 772 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 12 (Rhoxf12), mRNA. ACCESSION NM_001024901 XM_343757 VERSION NM_001024901.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
Hox4r6" /inference="alignment:Splign:2.1.0" exon 299..922 /gene="Hoxd3" /gene_synonym="Hox4r6" /inference="alignment:Splign:2.1.0" misc_feature 376..378 /gene="Hoxd3" /gene_synonym="Hox4r6" /note="upstream in-frame stop codon" CDS 382..1680 /gene="Hoxd3" /gene_synonym="Hox4r6" /note="homeobox protein R6; Homeobox gene D3" /codon_start=1 /product="homeobox protein Hox-D3" /protein_id="NP_001257967.1" /db_xref="GeneID:288152" /db_xref="RGD:1588601" /translation="...
mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="4" /map="4q24" gene 1..910 /gene="Hoxa7" /gene_synonym="Hox1r5; Hoxa9" /note="homeobox A7" /db_xref="GeneID:500126" /db_xref="RGD:1587253" exon 1..476 /gene="Hoxa7" /gene_synonym="Hox1r5; Hoxa9" /inference="alignment:Splign:2.1.0" misc_feature 65..67 /gene="Hoxa7" /gene_synonym="Hox1r5; Hoxa9" /note="upstream in-frame stop codon" CDS 101..790 /gene="Hoxa7" /gene_synonym="Hox1r5; Hoxa9" /note="Homeobox gene A7; hox-1.1; homeobox protein Hox-A7-like; homeobox protein R5; homeobox protein Hox-1.1; homeobox A9" /codon_start=1 /product="...
LOCUS NM_001408904 989 bp mRNA linear ROD 08-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 13 (Rhoxf13), mRNA. ACCESSION NM_001408904 XM_001077350 VERSION NM_001408904.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NR_132637 594 bp RNA linear ROD 02-APR-2024 DEFINITION Rattus norvegicus homeobox B5 and homeobox B6, opposite strand (Hoxb5os), long non-coding RNA. ACCESSION NR_132637 VERSION NR_132637.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0110.1. Sequence Note...
db_xref="RGD:1561529" exon 1..684 /gene="Cdx4" /gene_synonym="RGD1561529" /inference="alignment:Splign:2.1.0" misc_feature 141..143 /gene="Cdx4" /gene_synonym="RGD1561529" /note="upstream in-frame stop codon" CDS 171..1037 /gene="Cdx4" /gene_synonym="RGD1561529" /codon_start=1 /product="homeobox protein CDX-4" /protein_id="NP_001100412.1" /db_xref="GeneID:302400" /db_xref="RGD:1561529" /translation="...
LOCUS NM_022637 1284 bp mRNA linear ROD 28-JUN-2025 DEFINITION Rattus norvegicus ventral anterior homeobox 2 (Vax2), mRNA. ACCESSION NM_022637 VERSION NM_022637.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ014.1. On Apr 3, 2024 this...
LOCUS NM_001399755 2182 bp mRNA linear ROD 28-APR-2025 DEFINITION Rattus norvegicus homeobox D8 (Hoxd8), transcript variant 1, mRNA. ACCESSION NM_001399755 XM_039106382 VERSION NM_001399755.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ013.1. On Jan...
db_xref="GeneID:24459" /db_xref="RGD:1586210" exon 1..866 /gene="Hoxc4" /gene_synonym="Hox3r3" /inference="alignment:Splign:2.1.0" misc_feature 356..358 /gene="Hoxc4" /gene_synonym="Hox3r3" /note="upstream in-frame stop codon" CDS 428..1222 /gene="Hoxc4" /gene_synonym="Hox3r3" /note="homeobox protein R3; Homeobox gene C4" /codon_start=1 /product="homeobox protein Hox-C4" /protein_id="NP_001103354.1" /db_xref="GeneID:24459" /db_xref="RGD:1586210" /translation="...
LOCUS NM_001399756 2179 bp mRNA linear ROD 28-APR-2025 DEFINITION Rattus norvegicus homeobox D8 (Hoxd8), transcript variant 2, mRNA. ACCESSION NM_001399756 XM_039106383 VERSION NM_001399756.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_139036 1890 bp mRNA linear ROD 30-APR-2025 DEFINITION Rattus norvegicus LIM homeobox 5 (Lhx5), mRNA. ACCESSION NM_139036 VERSION NM_139036.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0112.1. On Dec 5, 2020 this sequence...
LOCUS NM_017149 2247 bp mRNA linear ROD 05-MAY-2025 DEFINITION Rattus norvegicus mesenchyme homeobox 2 (Meox2), mRNA. ACCESSION NM_017149 VERSION NM_017149.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAXUCZ016.1. On Nov 26, 2020 this...
LOCUS NM_022636 1011 bp mRNA linear ROD 02-APR-2025 DEFINITION Rattus norvegicus ventral anterior homeobox 1 (Vax1), mRNA. ACCESSION NM_022636 VERSION NM_022636.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF113515.1. ##Evidence-Data-START...
LOCUS NM_001393802 2802 bp mRNA linear ROD 29-JUL-2025 DEFINITION Rattus norvegicus Rhox homeobox family member 7 (Rhoxf7), mRNA. ACCESSION NM_001393802 XM_039099574 VERSION NM_001393802.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0121.1. On...
LOCUS NM_001034144 1800 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK3 homeobox 1 (Nkx3-1), mRNA. ACCESSION NM_001034144 XM_224360 VERSION NM_001034144.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC100628.1. On Oct...
map="18q12.1" gene 1..1778 /gene="Cdx1" /note="caudal type homeo box 1" /db_xref="GeneID:364883" /db_xref="RGD:621233" exon 1..544 /gene="Cdx1" /inference="alignment:Splign:2.1.0" misc_feature 19..21 /gene="Cdx1" /note="upstream in-frame stop codon" CDS 100..921 /gene="Cdx1" /note="caudal type homeobox transcription factor 1; caudal-type homeobox protein 1" /codon_start=1 /product="homeobox protein CDX-1" /protein_id="NP_001406562.1" /db_xref="GeneID:364883" /db_xref="RGD:621233" /translation="...
LOCUS NM_001434430 2496 bp mRNA linear ROD 28-OCT-2024 DEFINITION Rattus norvegicus iroquois homeobox 6 (Irx6), transcript variant 2, mRNA. ACCESSION NM_001434430 XM_063278003 VERSION NM_001434430.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1224..1340 /gene="Irx6" /gene_synonym="RGD1564830" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 786..1034 /gene="Irx6" /gene_synonym="RGD1564830" /inference="alignment:...
LOCUS NM_053651 1427 bp mRNA linear ROD 26-JUN-2025 DEFINITION Rattus norvegicus NK2 homeobox 5 (Nkx2-5), mRNA. ACCESSION NM_053651 VERSION NM_053651.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0110.1. On Nov 26, 2020 this sequence...
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0.000 | 0.000 | search_start;
0.446 | 0.446 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.594 | 0.147 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.599 | 0.005 | cgi_end;
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GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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