ver.2
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Previous release (v1)
2026-09-28 01:47:40, GGRNA : RefSeq release 233 (Jan, 2026)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS NM_001106302 1362 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus H6 family homeobox 3 (Hmx3), mRNA. ACCESSION NM_001106302 XM_001054019 XM_219327 VERSION NM_001106302.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001108880 1372 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus BARX homeobox 1 (Barx1), mRNA. ACCESSION NM_001108880 XM_001056986 XM_344575 VERSION NM_001108880.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473977.1....
Splign:2.1.0" misc_feature 33..35 /gene="Hoxc5" /note="upstream in-frame stop codon" CDS 75..743 /gene="Hoxc5" /codon_start=1 /product="homeobox protein Hox-C5" /protein_id="NP_001101586.1" /db_xref="GeneID:315341" /db_xref="RGD:1307584" /translation="...inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2734) AUTHORS Moon SM, Ahn MY, Kwon SM, Kim SA, Ahn SG and Yoon JH. TITLE Homeobox C5 expression is associated with the progression of 4-nitroquinoline 1-oxide-induced rat tongue carcinogenesis JOURNAL J Oral Pathol Med...
LOCUS NM_001109244 816 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus ladybird homeobox 2 (Lbx2), mRNA. ACCESSION NM_001109244 XM_001072452 XM_575575 VERSION NM_001109244.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001433432 1056 bp mRNA linear ROD 21-AUG-2024 DEFINITION Rattus norvegicus TGFB-induced factor homeobox 2-like, X-linked 2 (Tgif2lx2), mRNA. ACCESSION NM_001433432 XM_056985152 VERSION NM_001433432.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 286..402 /gene="Tgif2lx2" /gene_synonym="RGD1561826" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN // REFERENCE 1 (bases 1 to 1056) AUTHORS Gaudet,P., Livstone,M.S., Lewis,S.E...
LOCUS NM_001109166 2000 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus T-cell leukemia, homeobox 1 (Tlx1), mRNA. ACCESSION NM_001109166 XM_001057997 XM_574674 VERSION NM_001109166.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
map="7q36" gene 1..1680 /gene="Hoxc6" /note="homeo box C6" /db_xref="GeneID:252885" /db_xref="RGD:620626" exon 1..527 /gene="Hoxc6" /inference="alignment:Splign:2.1.0" misc_feature 47..49 /gene="Hoxc6" /note="upstream in-frame stop codon" CDS 128..835 /gene="Hoxc6" /codon_start=1 /product="homeobox protein Hox-C6" /protein_id="NP_001385447.1" /db_xref="GeneID:252885" /db_xref="RGD:620626" /translation="...
LOCUS NM_001127653 1468 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 6 (Nkx2-6), mRNA. ACCESSION NM_001127653 XM_001068954 XM_344429 VERSION NM_001127653.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC160896.1....
LOCUS NM_001432018 1380 bp mRNA linear ROD 24-JUL-2024 DEFINITION Rattus norvegicus developing brain homeobox 2 (Dbx2), transcript variant 2, mRNA. ACCESSION NM_001432018 XM_006242286 VERSION NM_001432018.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_001107594 1472 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 3 (Nkx2-3), mRNA. ACCESSION NM_001107594 XM_001056222 XM_219880 VERSION NM_001107594.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473986.1....
LOCUS NM_001109455 1881 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK6 homeobox 3 (Nkx6-3), mRNA. ACCESSION NM_001109455 XM_001062306 VERSION NM_001109455.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473970.2. On Oct...
LOCUS NM_001109106 1148 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus HESX homeobox 1 (Hesx1), mRNA. ACCESSION NM_001109106 XM_001057775 XM_573850 VERSION NM_001109106.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474067.2....
map="3q23" gene 1..1830 /gene="Hoxd1" /note="homeo box D1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" exon 1..756 /gene="Hoxd1" /inference="alignment:Splign:2.1.0" misc_feature 60..62 /gene="Hoxd1" /note="upstream in-frame stop codon" CDS 105..1091 /gene="Hoxd1" /codon_start=1 /product="homeobox protein Hox-D1" /protein_id="NP_001099354.1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" /translation="...
LOCUS NM_001432286 3767 bp mRNA linear ROD 30-JUL-2024 DEFINITION Rattus norvegicus mohawk homeobox (Mkx), transcript variant 2, mRNA. ACCESSION NM_001432286 XM_008771811 VERSION NM_001432286.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa;...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 500..616 /gene="Mkx" /gene_synonym="Irxl1; RGD1305652" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 427..583 /gene="Mkx" /gene_synonym="Irxl1; RGD1305652" /inference="alignment...
LOCUS NM_001109546 2814 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus visual system homeobox 1 (Vsx1), mRNA. ACCESSION NM_001109546 XM_001071714 VERSION NM_001109546.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474050.2. On...
LOCUS NM_001432285 3721 bp mRNA linear ROD 31-JUL-2024 DEFINITION Rattus norvegicus mohawk homeobox (Mkx), transcript variant 1, mRNA. ACCESSION NM_001432285 XM_017600733 VERSION NM_001432285.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 454..570 /gene="Mkx" /gene_synonym="Irxl1; RGD1305652" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 381..537 /gene="Mkx" /gene_synonym="Irxl1; RGD1305652" /inference="alignment...
LOCUS NM_001432017 1476 bp mRNA linear ROD 27-JUL-2024 DEFINITION Rattus norvegicus developing brain homeobox 2 (Dbx2), transcript variant 1, mRNA. ACCESSION NM_001432017 XM_001053826 VERSION NM_001432017.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
LOCUS NM_001106732 1078 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 8 (Nkx2-8), mRNA. ACCESSION NM_001106732 XM_001079326 XM_234179 VERSION NM_001106732.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473947.1....
LOCUS NM_001102413 2493 bp mRNA linear ROD 26-OCT-2024 DEFINITION Rattus norvegicus iroquois homeobox 6 (Irx6), transcript variant 1, mRNA. ACCESSION NM_001102413 XM_001064772 XM_226359 VERSION NM_001102413.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1224..1340 /gene="Irx6" /gene_synonym="RGD1564830" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 786..1034 /gene="Irx6" /gene_synonym="RGD1564830" /inference="alignment:...
LOCUS NM_001134983 2908 bp mRNA linear ROD 14-JUL-2024 DEFINITION Rattus norvegicus TGFB-induced factor homeobox 2 (Tgif2), mRNA. ACCESSION NM_001134983 XM_001067005 XM_575274 VERSION NM_001134983.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus...; other site" /db_xref="CDD:238039" misc_feature 327..443 /gene="Tgif2" /gene_synonym="RGD1560115; RGD1564927; Tgif2l1" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 411..2885 /gene="Tgif2" /gene_synonym="RGD1560115; RGD1564927; Tgif2l1" /inference="...
LOCUS NM_001129878 2253 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus homeobox A11 (Hoxa11), mRNA. ACCESSION NM_001129878 XM_001059505 VERSION NM_001129878.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474011.2. On Jul...
LOCUS NM_001434430 2496 bp mRNA linear ROD 28-OCT-2024 DEFINITION Rattus norvegicus iroquois homeobox 6 (Irx6), transcript variant 2, mRNA. ACCESSION NM_001434430 XM_063278003 VERSION NM_001434430.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1224..1340 /gene="Irx6" /gene_synonym="RGD1564830" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 786..1034 /gene="Irx6" /gene_synonym="RGD1564830" /inference="alignment:...
LOCUS NM_001107837 3421 bp mRNA linear ROD 12-JUN-2024 DEFINITION Rattus norvegicus LIM homeobox 6 (Lhx6), mRNA. ACCESSION NM_001107837 XM_001079382 XM_231175 VERSION NM_001107837.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ013.1. On...
LOCUS NM_001433385 1292 bp mRNA linear ROD 15-AUG-2024 DEFINITION Rattus norvegicus POU class 2 homeobox associating factor 2 (Pou2af2), mRNA. ACCESSION NM_001433385 XM_008766355 VERSION NM_001433385.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
db_xref="RGD:1561529" exon 1..684 /gene="Cdx4" /gene_synonym="RGD1561529" /inference="alignment:Splign:2.1.0" misc_feature 141..143 /gene="Cdx4" /gene_synonym="RGD1561529" /note="upstream in-frame stop codon" CDS 171..1037 /gene="Cdx4" /gene_synonym="RGD1561529" /codon_start=1 /product="homeobox protein CDX-4" /protein_id="NP_001100412.1" /db_xref="GeneID:302400" /db_xref="RGD:1561529" /translation="...
LOCUS NM_001034144 1800 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK3 homeobox 1 (Nkx3-1), mRNA. ACCESSION NM_001034144 XM_224360 VERSION NM_001034144.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC100628.1. On Oct...
LOCUS NM_001109214 2713 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus engrailed homeobox 2 (En2), mRNA. ACCESSION NM_001109214 XM_001058797 XM_575315 VERSION NM_001109214.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001433158 1530 bp mRNA linear ROD 09-AUG-2024 DEFINITION Rattus norvegicus ESX homeobox 1 (Esx1), mRNA. ACCESSION NM_001433158 XM_039100644 VERSION NM_001433158.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0121.1. On Aug...
LOCUS NM_001433002 2012 bp mRNA linear ROD 23-AUG-2024 DEFINITION Rattus norvegicus double homeobox 4 (Dux4), mRNA. ACCESSION NM_001433002 VERSION NM_001433002.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0116.1. ##Evidence-Data-START...
LOCUS NM_001109599 2527 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus POU class 2 homeobox associating factor 1 (Pou2af1), mRNA. ACCESSION NM_001109599 XM_001074701 VERSION NM_001109599.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived...
LOCUS NM_001108399 1384 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus PBX homeobox 4 (Pbx4), mRNA. ACCESSION NM_001108399 XM_001069955 XM_341418 VERSION NM_001108399.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474031.2. On...
db_xref="RGD:1306511" exon 1..845 /gene="Hoxd10" /inference="alignment:Splign:2.1.0" CDS 101..1123 /gene="Hoxd10" /codon_start=1 /product="homeobox protein Hox-D10" /protein_id="NP_001100564.1" /db_xref="GeneID:303991" /db_xref="RGD:1306511" /translation="...Y, Li H, Wei X, Wu H, Wang H, Wilcox CS, Hultstrom M, Zhou X and Lai EY. TITLE Sympathoexcitation in Rats With Chronic Heart Failure Depends on Homeobox D10 and MicroRNA-7b Inhibiting GABBR1 Translation in Paraventricular Nucleus JOURNAL Circ Heart Fail 9 (1), e002261 (2016) PUBMED 26699387 REMARK...
inference="alignment:Splign:2.1.0" exon 510..1008 /gene="Hoxd4" /inference="alignment:Splign:2.1.0" exon 1009..1838 /gene="Hoxd4" /inference="alignment:Splign:2.1.0" misc_feature 1250..1252 /gene="Hoxd4" /note="upstream in-frame stop codon" CDS 1412..2167 /gene="Hoxd4" /codon_start=1 /product="homeobox protein Hox-D4" /protein_id="NP_001099355.1" /db_xref="GeneID:288153" /db_xref="RGD:1309690" /translation="...
LOCUS NM_001431422 2343 bp mRNA linear ROD 16-JUL-2024 DEFINITION Rattus norvegicus orthodenticle homeobox 2 (Otx2), transcript variant 2, mRNA. ACCESSION NM_001431422 XM_039093285 VERSION NM_001431422.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota;...gene="Otx2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2343) AUTHORS Rohde,K., Hertz,H. and Rath,M.F. TITLE Homeobox genes in melatonin-producing pinealocytes: Otx2 and Crx act to promote hormone synthesis in the mature rat pineal gland JOURNAL J Pineal Res 66 (4),...
LOCUS NM_001431421 2192 bp mRNA linear ROD 18-JUL-2024 DEFINITION Rattus norvegicus orthodenticle homeobox 2 (Otx2), transcript variant 1, mRNA. ACCESSION NM_001431421 XM_006251838 VERSION NM_001431421.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus...gene="Otx2" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2192) AUTHORS Rohde,K., Hertz,H. and Rath,M.F. TITLE Homeobox genes in melatonin-producing pinealocytes: Otx2 and Crx act to promote hormone synthesis in the mature rat pineal gland JOURNAL J Pineal Res 66 (4),...
LOCUS NM_001426997 2165 bp mRNA linear ROD 24-JUN-2024 DEFINITION Rattus norvegicus LIM homeobox 3 (Lhx3), mRNA. ACCESSION NM_001426997 XM_002729144 VERSION NM_001426997.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ013.1. On Jan...
LOCUS NM_001434615 4390 bp mRNA linear ROD 15-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 2, mRNA. ACCESSION NM_001434615 XM_063279041 VERSION NM_001434615.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota;...misc_feature 419..676 /gene="Pknox1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(956..970,974..976,1034..1036,1052..1054,1091..1093, 1097..1102,1109..1114,1118..1126) /gene="Pknox1" /note="DNA binding site...
LOCUS NM_001015020 1410 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus TGFB-induced factor homeobox 1 (Tgif1), mRNA. ACCESSION NM_001015020 XM_237524 VERSION NM_001015020.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota;...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 253..369 /gene="Tgif1" /gene_synonym="Tfig; Tgif" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 107..336 /gene="Tgif1" /gene_synonym="Tfig; Tgif" /inference="alignment:...
norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="3" /map="3q23" gene 1..2483 /gene="Hoxd13" /note="homeo box D13" /db_xref="GeneID:288154" /db_xref="RGD:1308417" exon 1..768 /gene="Hoxd13" /inference="alignment:Splign:2.1.0" CDS 24..1019 /gene="Hoxd13" /codon_start=1 /product="homeobox protein Hox-D13" /protein_id="NP_001099356.1" /db_xref="GeneID:288154" /db_xref="RGD:1308417" /translation="...
LOCUS NM_001107834 2318 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus PBX homeobox 3 (Pbx3), mRNA. ACCESSION NM_001107834 XM_001078717 XM_001078726 XM_001078743 XM_001078759 XM_231158 VERSION NM_001107834.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference...
LOCUS NM_001434616 4636 bp mRNA linear ROD 15-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 3, mRNA. ACCESSION NM_001434616 XM_039098544 VERSION NM_001434616.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota;...misc_feature 662..919 /gene="Pknox1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(1202..1216,1220..1222,1280..1282,1298..1300, 1337..1339,1343..1348,1355..1360,1364..1372) /gene="Pknox1" /note="DNA binding site...
LOCUS NM_001013074 4393 bp mRNA linear ROD 18-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 1, mRNA. ACCESSION NM_001013074 XM_039098545 XM_215364 VERSION NM_001013074.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM...misc_feature 419..676 /gene="Pknox1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(959..973,977..979,1037..1039,1055..1057,1094..1096, 1100..1105,1112..1117,1121..1129) /gene="Pknox1" /note="DNA binding site...
LOCUS NM_001415156 1165 bp mRNA linear ROD 12-NOV-2024 DEFINITION Rattus norvegicus paired related homeobox 2 (Prrx2), mRNA. ACCESSION NM_001415156 XM_039104087 VERSION NM_001415156.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ013.1....
LOCUS NM_001427246 2735 bp mRNA linear ROD 01-JUL-2024 DEFINITION Rattus norvegicus paired-like homeobox 2b (Phox2b), mRNA. ACCESSION NM_001427246 XM_008770167 VERSION NM_001427246.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0114.1....
product="homeobox protein Meis2" /protein_id="NP_001402625.1" /db_xref="GeneID:311311" /db_xref="RGD:1305198" /translation="MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM" misc_feature 656..910 /gene="Meis2" /note="N-terminal of Homeobox Meis and...
LOCUS NR_132637 594 bp RNA linear ROD 02-APR-2024 DEFINITION Rattus norvegicus homeobox B5 and homeobox B6, opposite strand (Hoxb5os), long non-coding RNA. ACCESSION NR_132637 VERSION NR_132637.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0110.1. Sequence Note...
LOCUS NR_176814 2849 bp RNA linear ROD 02-APR-2024 DEFINITION Rattus norvegicus cut-like homeobox 1, pseudogene 1 (Cux1-ps1), non-coding RNA. ACCESSION NR_176814 XM_039108675 VERSION NR_176814.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ014.1. On Jul 7, 2022...
roduct="homeobox protein Meis1 isoform X5" /protein_id="XP_063129700.1" /db_xref="GeneID:686117" /db_xref="RGD:1585482" /translation="MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDVTRAANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGNQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM" misc_feature 2686..2940 /gene="Meis1" /note="N-terminal of Homeobox Meis...
oduct="homeobox protein Meis2 isoform X11" /protein_id="XP_006234817.1" /db_xref="GeneID:311311" /db_xref="RGD:1305198" /translation="MFLYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM" misc_feature 457..711 /gene="Meis2" /note="N-terminal of Homeobox Meis...
t="homeobox protein Meis2 isoform X10" /protein_id="XP_006234815.1" /db_xref="GeneID:311311" /db_xref="RGD:1305198" /translation="MFLYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNVMPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGHASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM" misc_feature 457..711 /gene="Meis2" /note="N-terminal of Homeobox...
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Redirect URI : https://ggrna.dbcls.jp/rn/homeobox
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0.000 | 0.000 | search_start;
0.181 | 0.181 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.336 | 0.155 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.341 | 0.005 | cgi_end;
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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