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Previous release (v1)
2025-03-02 02:31:42, GGRNA : RefSeq release 228 (Jan, 2025)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
LOCUS NM_017339 1060 bp mRNA linear ROD 08-OCT-2024 DEFINITION Rattus norvegicus ISL LIM homeobox 1 (Isl1), mRNA. ACCESSION NM_017339 VERSION NM_017339.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from S69329.1. On Apr 28, 2006 this sequence...
misc_feature 391..507 /gene="Irx5" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature <667..1233 /gene="Irx5" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" exon 1..246 /gene="Irx5" /inference="alignment:Splign:2.1.0" exon 247..652 /gene="Irx5" /inference="alignment:Splign:2.1.0" exon 653..1455 /gene="Irx5" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1455) AUTHORS Liu D, Pattabiraman V, Bacanamwo M and Anderson LM. TITLE Iroquois homeobox transcription factor (Irx5) promotes G1/S-...
LOCUS NM_023951 567 bp mRNA linear ROD 07-OCT-2024 DEFINITION Rattus norvegicus SEBOX homeobox (Sebox), mRNA. ACCESSION NM_023951 VERSION NM_023951.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF284338.1. ##Evidence-Data-START## RNAseq...
LOCUS NM_001433432 1056 bp mRNA linear ROD 21-AUG-2024 DEFINITION Rattus norvegicus TGFB-induced factor homeobox 2-like, X-linked 2 (Tgif2lx2), mRNA. ACCESSION NM_001433432 XM_056985152 VERSION NM_001433432.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 286..402 /gene="Tgif2lx2" /gene_synonym="RGD1561826" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN // REFERENCE 1 (bases 1 to 1056) AUTHORS Gaudet,P., Livstone,M.S., Lewis,S.E...
LOCUS NM_001102413 2493 bp mRNA linear ROD 26-OCT-2024 DEFINITION Rattus norvegicus iroquois homeobox 6 (Irx6), transcript variant 1, mRNA. ACCESSION NM_001102413 XM_001064772 XM_226359 VERSION NM_001102413.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1224..1340 /gene="Irx6" /gene_synonym="RGD1564830" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 786..1034 /gene="Irx6" /gene_synonym="RGD1564830" /inference="alignment:...
LOCUS NM_152849 1785 bp mRNA linear ROD 04-OCT-2024 DEFINITION Rattus norvegicus homeobox and leucine zipper encoding (Homez), mRNA. ACCESSION NM_152849 VERSION NM_152849.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC084701.1. On Oct...
map="10q26" gene 1..1235 /gene="Hoxb7" /gene_synonym="Hox2r1b; R1b" /note="homeo box B7" /db_xref="GeneID:497985" /db_xref="RGD:1559918" exon 1..419 /gene="Hoxb7" /gene_synonym="Hox2r1b; R1b" /inference="alignment:Splign:2.1.0" CDS 20..679 /gene="Hoxb7" /gene_synonym="Hox2r1b; R1b" /note="homeobox gene B7; homeobox protein R1B" /codon_start=1 /product="homeobox protein Hox-B7" /protein_id="NP_001017480.1" /db_xref="GeneID:497985" /db_xref="RGD:1559918" /translation="...
LOCUS NM_001434430 2496 bp mRNA linear ROD 28-OCT-2024 DEFINITION Rattus norvegicus iroquois homeobox 6 (Irx6), transcript variant 2, mRNA. ACCESSION NM_001434430 XM_063278003 VERSION NM_001434430.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_001433385 1292 bp mRNA linear ROD 15-AUG-2024 DEFINITION Rattus norvegicus POU class 2 homeobox associating factor 2 (Pou2af2), mRNA. ACCESSION NM_001433385 XM_008766355 VERSION NM_001433385.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_001433002 2012 bp mRNA linear ROD 23-AUG-2024 DEFINITION Rattus norvegicus double homeobox 4 (Dux4), mRNA. ACCESSION NM_001433002 VERSION NM_001433002.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0116.1. ##Evidence-Data-START...
LOCUS NM_133621 1070 bp mRNA linear ROD 19-AUG-2024 DEFINITION Rattus norvegicus HOP homeobox (Hopx), mRNA. ACCESSION NM_133621 VERSION NM_133621.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0114.1. On Nov 25, 2020 this sequence...
LOCUS NM_001013074 4393 bp mRNA linear ROD 18-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 1, mRNA. ACCESSION NM_001013074 XM_039098545 XM_215364 VERSION NM_001013074.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM...misc_feature 419..676 /gene="Pknox1" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order(959..973,977..979,1037..1039,1055..1057,1094..1096, 1100..1105,1112..1117,1121..1129) /gene="Pknox1" /note="DNA binding site...
LOCUS NM_001415156 1165 bp mRNA linear ROD 12-NOV-2024 DEFINITION Rattus norvegicus paired related homeobox 2 (Prrx2), mRNA. ACCESSION NM_001415156 XM_039104087 VERSION NM_001415156.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ013.1....
LOCUS NM_001024889 829 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus reproductive homeobox 4G (Rhox4g), mRNA. ACCESSION NM_001024889 XM_233314 VERSION NM_001024889.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058652.1. On Jun...
LOCUS NM_001025776 738 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus reproductive homeobox 8 (Rhox8), mRNA. ACCESSION NM_001025776 XM_578961 VERSION NM_001025776.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058655.1. On Jul 22, 2005...
LOCUS NM_001434615 4390 bp mRNA linear ROD 15-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 2, mRNA. ACCESSION NM_001434615 XM_063279041 VERSION NM_001434615.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_001434616 4636 bp mRNA linear ROD 15-NOV-2024 DEFINITION Rattus norvegicus PBX/knotted 1 homeobox 1 (Pknox1), transcript variant 3, mRNA. ACCESSION NM_001434616 XM_039098544 VERSION NM_001434616.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from...
LOCUS NM_001135607 908 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus reproductive homeobox on X chromosome 3 (Rhox3), mRNA. ACCESSION NM_001135607 VERSION NM_001135607.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058651.1. ##Evidence-...
LOCUS NM_001106302 1362 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus H6 family homeobox 3 (Hmx3), mRNA. ACCESSION NM_001106302 XM_001054019 XM_219327 VERSION NM_001106302.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
END## FEATURES Location/Qualifiers source 1..843 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="7" /map="7q36" gene 1..843 /gene="Hoxc12" /note="homeo box C12" /db_xref="GeneID:300262" /db_xref="RGD:1310539" CDS 1..843 /gene="Hoxc12" /codon_start=1 /product="homeobox protein Hox-C12" /protein_id="NP_001100266.1" /db_xref="GeneID:300262" /db_xref="RGD:1310539" /translation="...
LOCUS NM_001108880 1372 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus BARX homeobox 1 (Barx1), mRNA. ACCESSION NM_001108880 XM_001056986 XM_344575 VERSION NM_001108880.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473977.1....
LOCUS NM_001024901 772 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus Rhox homeobox family member 12 (Rhox12), mRNA. ACCESSION NM_001024901 XM_343757 VERSION NM_001024901.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
Splign:2.1.0" misc_feature 33..35 /gene="Hoxc5" /note="upstream in-frame stop codon" CDS 75..743 /gene="Hoxc5" /codon_start=1 /product="homeobox protein Hox-C5" /protein_id="NP_001101586.1" /db_xref="GeneID:315341" /db_xref="RGD:1307584" /translation="...inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2734) AUTHORS Moon SM, Ahn MY, Kwon SM, Kim SA, Ahn SG and Yoon JH. TITLE Homeobox C5 expression is associated with the progression of 4-nitroquinoline 1-oxide-induced rat tongue carcinogenesis JOURNAL J Oral Pathol Med...
LOCUS NM_001109244 816 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus ladybird homeobox 2 (Lbx2), mRNA. ACCESSION NM_001109244 XM_001072452 XM_575575 VERSION NM_001109244.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001109166 2000 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus T-cell leukemia, homeobox 1 (Tlx1), mRNA. ACCESSION NM_001109166 XM_001057997 XM_574674 VERSION NM_001109166.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001127653 1468 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 6 (Nkx2-6), mRNA. ACCESSION NM_001127653 XM_001068954 XM_344429 VERSION NM_001127653.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC160896.1....
LOCUS NM_001107594 1472 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 3 (Nkx2-3), mRNA. ACCESSION NM_001107594 XM_001056222 XM_219880 VERSION NM_001107594.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473986.1....
LOCUS NM_001109455 1881 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK6 homeobox 3 (Nkx6-3), mRNA. ACCESSION NM_001109455 XM_001062306 VERSION NM_001109455.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473970.2. On Oct...
LOCUS NM_001109106 1148 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus HESX homeobox 1 (Hesx1), mRNA. ACCESSION NM_001109106 XM_001057775 XM_573850 VERSION NM_001109106.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474067.2....
map="3q23" gene 1..1830 /gene="Hoxd1" /note="homeo box D1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" exon 1..756 /gene="Hoxd1" /inference="alignment:Splign:2.1.0" misc_feature 60..62 /gene="Hoxd1" /note="upstream in-frame stop codon" CDS 105..1091 /gene="Hoxd1" /codon_start=1 /product="homeobox protein Hox-D1" /protein_id="NP_001099354.1" /db_xref="GeneID:288151" /db_xref="RGD:1309179" /translation="...
LOCUS NM_001109546 2814 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus visual system homeobox 1 (Vsx1), mRNA. ACCESSION NM_001109546 XM_001071714 VERSION NM_001109546.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474050.2. On...
LOCUS NM_001106732 1078 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK2 homeobox 8 (Nkx2-8), mRNA. ACCESSION NM_001106732 XM_001079326 XM_234179 VERSION NM_001106732.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473947.1....
LOCUS NM_001129878 2253 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus homeobox A11 (Hoxa11), mRNA. ACCESSION NM_001129878 XM_001059505 VERSION NM_001129878.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474011.2. On Jul...
db_xref="RGD:1561529" exon 1..684 /gene="Cdx4" /gene_synonym="RGD1561529" /inference="alignment:Splign:2.1.0" misc_feature 141..143 /gene="Cdx4" /gene_synonym="RGD1561529" /note="upstream in-frame stop codon" CDS 171..1037 /gene="Cdx4" /gene_synonym="RGD1561529" /codon_start=1 /product="homeobox protein CDX-4" /protein_id="NP_001100412.1" /db_xref="GeneID:302400" /db_xref="RGD:1561529" /translation="...
LOCUS NM_001308265 5190 bp mRNA linear ROD 01-OCT-2024 DEFINITION Rattus norvegicus zinc finger E-box binding homeobox 1 (Zeb1), mRNA. ACCESSION NM_001308265 VERSION NM_001308265.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0117.1. On...
LOCUS NM_001034144 1800 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus NK3 homeobox 1 (Nkx3-1), mRNA. ACCESSION NM_001034144 XM_224360 VERSION NM_001034144.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC100628.1. On Oct...
LOCUS NM_001109214 2713 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus engrailed homeobox 2 (En2), mRNA. ACCESSION NM_001109214 XM_001058797 XM_575315 VERSION NM_001109214.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
LOCUS NM_001109599 2527 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus POU class 2 homeobox associating factor 1 (Pou2af1), mRNA. ACCESSION NM_001109599 XM_001074701 VERSION NM_001109599.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived...
LOCUS NM_001108399 1384 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus PBX homeobox 4 (Pbx4), mRNA. ACCESSION NM_001108399 XM_001069955 XM_341418 VERSION NM_001108399.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474031.2. On...
db_xref="RGD:1306511" exon 1..845 /gene="Hoxd10" /inference="alignment:Splign:2.1.0" CDS 101..1123 /gene="Hoxd10" /codon_start=1 /product="homeobox protein Hox-D10" /protein_id="NP_001100564.1" /db_xref="GeneID:303991" /db_xref="RGD:1306511" /translation="...Y, Li H, Wei X, Wu H, Wang H, Wilcox CS, Hultstrom M, Zhou X and Lai EY. TITLE Sympathoexcitation in Rats With Chronic Heart Failure Depends on Homeobox D10 and MicroRNA-7b Inhibiting GABBR1 Translation in Paraventricular Nucleus JOURNAL Circ Heart Fail 9 (1), e002261 (2016) PUBMED 26699387 REMARK...
LOCUS NM_001015020 1410 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus TGFB-induced factor homeobox 1 (Tgif1), mRNA. ACCESSION NM_001015020 XM_237524 VERSION NM_001015020.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota;...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 253..369 /gene="Tgif1" /gene_synonym="Tfig; Tgif" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 107..336 /gene="Tgif1" /gene_synonym="Tfig; Tgif" /inference="alignment:...
norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="3" /map="3q23" gene 1..2483 /gene="Hoxd13" /note="homeo box D13" /db_xref="GeneID:288154" /db_xref="RGD:1308417" exon 1..768 /gene="Hoxd13" /inference="alignment:Splign:2.1.0" CDS 24..1019 /gene="Hoxd13" /codon_start=1 /product="homeobox protein Hox-D13" /protein_id="NP_001099356.1" /db_xref="GeneID:288154" /db_xref="RGD:1308417" /translation="...
LOCUS NM_001107834 2318 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus PBX homeobox 3 (Pbx3), mRNA. ACCESSION NM_001107834 XM_001078717 XM_001078726 XM_001078743 XM_001078759 XM_231158 VERSION NM_001107834.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference...
LOCUS NM_001100781 2358 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus Nanog homeobox (Nanog), mRNA. ACCESSION NM_001100781 XM_001060618 XM_575662 VERSION NM_001100781.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473964.2. On...
LOCUS NR_132637 594 bp RNA linear ROD 02-APR-2024 DEFINITION Rattus norvegicus homeobox B5 and homeobox B6, opposite strand (Hoxb5os), long non-coding RNA. ACCESSION NR_132637 VERSION NR_132637.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ0110.1. Sequence Note...
gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /note="homeo box A4" /db_xref="GeneID:100912525" /db_xref="RGD:2814" exon 1..515 /gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /inference="alignment:Splign:2.1.0" CDS 5..862 /gene="Hoxa4" /gene_synonym="hox1.4; Hox1r2" /note="homeobox protein Hox-A4-like; Homeobox gene A4; homeobox protein R2; homeobox A4-like" /codon_start=1 /product="homeobox protein Hox-A4" /protein_id="NP_077326.1" /db_xref="GeneID:100912525" /db_xref="RGD:2814" /translation="...
feature 58..60 /gene="Rhox5" /gene_synonym="Pem" /note="upstream in-frame stop codon" exon 94..175 /gene="Rhox5" /gene_synonym="Pem" /inference="alignment:Splign:2.1.0" CDS 97..723 /gene="Rhox5" /gene_synonym="Pem" /note="homeobox protein Pem; reproductive homeobox on chromosome X 5; placenta and embryonic expression protein; placentae and embryos oncofetal; Homeobox gene Pem; reproductive homeobox 5" /codon_start=1 /product="homeobox protein Rhox5" /protein_id="NP_071511.2" /db_xref="GeneID:24631" /db_xref="RGD:3295" /translation="...
LOCUS NR_176814 2849 bp RNA linear ROD 02-APR-2024 DEFINITION Rattus norvegicus cut-like homeobox 1, pseudogene 1 (Cux1-ps1), non-coding RNA. ACCESSION NR_176814 XM_039108675 VERSION NR_176814.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ014.1. On Jul 7, 2022...
LOCUS NM_001024874 829 bp mRNA linear ROD 26-FEB-2024 DEFINITION Rattus norvegicus reproductive homeobox 9 (Rhox9), mRNA. ACCESSION NM_001024874 XM_216470 VERSION NM_001024874.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ058656.1. On Jun...
LOCUS NM_001106303 1497 bp mRNA linear ROD 24-JUN-2024 DEFINITION Rattus norvegicus H6 family homeobox 2 (Hmx2), mRNA. ACCESSION NM_001106303 XM_001054069 XM_215056 VERSION NM_001106303.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473953.1. On or before...
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0.000 | 0.000 | search_start;
0.077 | 0.077 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.132 | 0.055 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.138 | 0.005 | cgi_end;
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GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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