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2026-03-04 19:25:53, GGRNA : RefSeq release 233 (Jan, 2026)
Summary:
Results:
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LOCUS NM_001001405 1231 bp mRNA linear VRT 04-DEC-2022 DEFINITION Danio rerio iroquois homeobox 5b (irx5b), mRNA. ACCESSION NM_001001405 VERSION NM_001001405.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 407..523 /gene="irx5b" /gene_synonym="iro5b; ziro5b" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" misc_feature 836..889 /gene="irx5b" /gene_synonym="iro5b; ziro5b" /note="Motif in...
Synonym: iro5b; ziro5b
NM_001001405.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_0066 1639 bp mRNA linear VRT 08-OCT-2023 DEFINITION Danio rerio NK2 homeobox 4a (nkx2.4a), transcript variant 1, mRNA. ACCESSION NM_0066 XM_679993 XM_702667 XM_702669 VERSION NM_0066.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC153953.1. On or before Dec...
Synonym: fi48a12; wu:fi48a12; zgc:171531
NM_001111166.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001012251 1401 bp mRNA linear VRT 07-MAY-2024 DEFINITION Danio rerio GS homeobox 1 (gsx1), mRNA. ACCESSION NM_001012251 VERSION NM_001012251.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY486348.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: gsh1; im:7138106; zgc:110817
NM_001012251.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131232 3334 bp mRNA linear VRT 04-DEC-2023 DEFINITION Danio rerio even-skipped homeobox 2 (evx2), mRNA. ACCESSION NM_131232 VERSION NM_131232.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC057443.1. On Jan 25, 2004 this sequence version replaced NM_131232.1....
Synonym: Evx-2
NM_131232.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001130608 794 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 9 (six9), mRNA. ACCESSION NM_001130608 XM_684623 VERSION NM_001130608.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC163024.1. On May 28, 2009 this sequence version replaced XM...
Synonym: si:dkey-149j18.3
NM_001130608.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001080058 2330 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio POU class 4 homeobox 4 (pou4f4), mRNA. ACCESSION NM_001080058 XM_695754 VERSION NM_001080058.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC128835.1. On Mar 11, 2007 this sequence version...
Synonym: zgc:158291
NM_001080058.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131272 2029 bp mRNA linear VRT 25-JAN-2026 DEFINITION Danio rerio muscle segment homeobox 3 (msx3), mRNA. ACCESSION NM_131272 VERSION NM_131272.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JBMGRA0113.1, EH593082.1, DT069743.1 and EH607545.1. On Aug 18, 2015 this...
Synonym:
homeobox; msh-C; mshC; msx-c; msxc; zgc:86596
NM_131272.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_212836 2245 bp mRNA linear VRT 28-SEP-2024 DEFINITION Danio rerio caudal type homeobox 1a (cdx1a), mRNA. ACCESSION NM_212836 VERSION NM_212836.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC115217.1. On Mar 25, 2007 this sequence version replaced NM_212836.2....
Synonym: cdx2
NM_212836.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001045371 1446 bp mRNA linear VRT 08-JUN-2024 DEFINITION Danio rerio H6 family homeobox 4 (hmx4), mRNA. ACCESSION NM_001045371 VERSION NM_001045371.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC122454.1. Publication Note: This RefSeq record includes a subset of...
Synonym: Hmx1; soho; wu:fc21b03; zgc:154104
NM_001045371.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001128734 966 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 2b (six2b), mRNA. ACCESSION NM_001128734 XM_689724 VERSION NM_001128734.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 966) AUTHORS Ogawa Y, Shiraki T, Kojima D and Fukada Y. TITLE Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish JOURNAL Proc Biol Sci 282 (1812), 20150659 (2015) PUBMED 26180064...
Synonym: zgc:195089; zgc:195096
NM_001128734.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001128292 2435 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio prospero homeobox 2 (prox2), mRNA. ACCESSION NM_001128292 XM_001919487 VERSION NM_001128292.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EF517402.2. On Sep 16, 2008 this sequence version...
NM_001128292.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001160384 1350 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio NK2 homeobox 4a (nkx2.4a), transcript variant 2, mRNA. ACCESSION NM_001160384 XM_001923297 XM_001923299 XM_001923300 VERSION NM_001160384.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from...
Synonym: fi48a12; wu:fi48a12; zgc:171531
NM_001160384.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_201105 1317 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 6a (six6a), mRNA. ACCESSION NM_201105 VERSION NM_201105.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...PUBMED 26469318 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 1317) AUTHORS Ogawa Y, Shiraki T, Kojima D and Fukada Y. TITLE Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish JOURNAL Proc Biol Sci 282 (1812), 20150659 (2015) PUBMED 26180064...
Synonym: Six6; zgc:63871
NM_201105.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_205698 2101 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio iroquois homeobox 4a (irx4a), mRNA. ACCESSION NM_205698 VERSION NM_205698.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii...contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 742..858 /gene="irx4a" /gene_synonym="zgc:77362; ziro4a" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 322..561 /gene="irx4a" /gene_synonym="zgc:77362; ziro4a" /inference="alignment:...
Synonym: zgc:77362; ziro4a
NM_205698.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001098733 2945 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio mohawk homeobox a (mkxa), mRNA. ACCESSION NM_001098733 XM_678274 VERSION NM_001098733.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi...DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 462..578 /gene="mkxa" /gene_synonym="irxl1b" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 386..545 /gene="mkxa" /gene_synonym="irxl1b" /inference="alignment:Splign:2.1.0"...
Synonym: irxl1b
NM_001098733.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131363 1722 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio SIX homeobox 3b (six3b), mRNA. ACCESSION NM_131363 VERSION NM_131363.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF030281.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: cb347; SIX3; six3.2; six6
NM_131363.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131546 1582 bp mRNA linear VRT 12-JAN-2025 DEFINITION Danio rerio homeobox C13b (hoxc13b), mRNA. ACCESSION NM_131546 VERSION NM_131546.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC139597.1. On Apr 22, 2007 this sequence version replaced NM_131546.1....
Synonym: hoxf13
NM_131546.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131273 1088 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio muscle segment homeobox 1a (msx1a), mRNA. ACCESSION NM_131273 VERSION NM_131273.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from U50563.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: cb435; id:ibd5099; msh-E; mshE; msx1; msxe; zgc:111928
NM_131273.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001007782 1584 bp mRNA linear VRT 05-OCT-2024 DEFINITION Danio rerio NK2 homeobox 2b (nkx2.2b), mRNA. ACCESSION NM_001007782 XM_696524 VERSION NM_001007782.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC091555.1. On or before Jul 6, 2005 this sequence version...
NM_001007782.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131776 1773 bp mRNA linear VRT 07-DEC-2024 DEFINITION Danio rerio NK2 homeobox 1 (nkx2.1), mRNA. ACCESSION NM_131776 VERSION NM_131776.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF321112.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: nk2.1b; nkx2.1b; nkx2.4b; titf1b; wu:fc31g10
NM_131776.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001110759 926 bp mRNA linear VRT 12-JAN-2025 DEFINITION Danio rerio homeobox C12a (hoxc12a), mRNA. ACCESSION NM_001110759 XM_685980 VERSION NM_001110759.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC162849.1. On Sep 9, 2008 this sequence version replaced XM...
Synonym: si:dkey-81p22.1
NM_001110759.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131181 1037 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio homeobox B8b (hoxb8b), mRNA. ACCESSION NM_131181 XM_686884 VERSION NM_131181.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC162153.1. On May 8, 2009 this sequence version replaced XM_686884.3....
Synonym: hoxa8; z-9
NM_131181.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001130784 2680 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio homeobox and leucine zipper encoding b (homezb), mRNA. ACCESSION NM_001130784 XM_689495 VERSION NM_001130784.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC163532.1. On Aug 6, 2008 this...
Synonym: fk11d03; wu:fk11d03
NM_001130784.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131362 1914 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 3a (six3a), mRNA. ACCESSION NM_131362 VERSION NM_131362.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF030280.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: six3; six3.1; wu:fc10a08
NM_131362.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131538 987 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio homeobox B6b (hoxb6b), mRNA. ACCESSION NM_131538 XM_001335154 VERSION NM_131538.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC162890.1. On May 8, 2009 this sequence version replaced XM...
Synonym: hoxa7; z-5
NM_131538.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_207095 1276 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio SIX homeobox 1b (six1b), mRNA. ACCESSION NM_207095 VERSION NM_207095.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC066396.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: six1; zgc:77345
NM_207095.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
iroquois homeobox protein 7" /codon_start=1 /product="iroquois homeobox 7" /protein_id="NP_571956.1" /db_xref="GeneID:140746" /db_xref="ZFIN:ZDB-GENE-020103-1" /translation="MPASSTGFANFFMDRNINMPAGYQLLGCPPGMQQPPPHLVGMAGMPLPFSGIPGYSFIPYPHPGHMAHISNSYDLKAASPYHQALLGRGGPYYTPYRPIPADDPSRVTKVATRESTSALKAWLSEHLKNPYPTKGEKIMLAIVTKMSLTQVSTWFANARRRLKKENRVSWASKGKSDEEDEEEEGESEEEGSLRKGTEDEDEIDPQTVDDEDEEDVVVSKSVEHRLAGGLEQQKESDKSDTLTKRESYKQIADVQKPKIWSLAETATSDIVKKPSDLKHLQTSPDFGQWWAGWPSRDSYSPVNLSTHDLLKQSQ" misc_feature 391..507 /gene="irx7" /gene_synonym="cb263; iro7; zgc:109841; ziro7" /note="Homeobox KN domain;...
Synonym: cb263; iro7; zgc:109841; ziro7
NM_131881.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001009904 1610 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio SIX homeobox 1a (six1a), mRNA. ACCESSION NM_001009904 VERSION NM_001009904.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC076015.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: six1b; six2; zgc:92332
NM_001009904.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131537 1656 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio homeobox B5b (hoxb5b), mRNA. ACCESSION NM_131537 VERSION NM_131537.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC078285.1. On Aug 31, 2012 this sequence version replaced NM_131537.2. Publication...
Synonym: hoxa5; hoxb5-like; hoxzf54; id:ibd2566; z-2; ZF-54; ZF54; zgc:101134
NM_131537.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_201057 2239 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio iroquois homeobox 2a (irx2a), mRNA. ACCESSION NM_201057 VERSION NM_201057.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii...; other site" /db_xref="CDD:238039" misc_feature 506..622 /gene="irx2a" /gene_synonym="Irx2; zgc:65872; zgc:77209; ziro2a" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 359..761 /gene="irx2a" /gene_synonym="Irx2; zgc:65872; zgc:77209; ziro2a" /...
Synonym: Irx2; zgc:65872; zgc:77209; ziro2a
NM_201057.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
in zebrafish JOURNAL Dev Biol 278 (2), 415-427 (2005) PUBMED 15680360 REFERENCE 7 (bases 1 to 2113) AUTHORS Rhinn,M., Lun,K., Werner,M., Simeone,A. and Brand,M. TITLE Isolation and expression of the homeobox gene Gbx1 during mouse development JOURNAL Dev Dyn 229 (2), 334-339 (2004) PUBMED 14745958 REFERENCE 8 (bases 1 to 2113) AUTHORS Kikuta,H., Kanai,M., Ito,Y. and Yamasu,K. TITLE gbx2 Homeobox gene is required for the maintenance of the isthmic region in the zebrafish embryonic brain JOURNAL Dev Dyn 228 (3), 433-450 (2003) PUBMED 14579382 REMARK GeneRIF: Ectopic expression of gbx2 by mRNA...
Synonym: fd07f12; gbx-2; wu:fd07f12
NM_152964.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001079816 1367 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio mix-type homeobox gene 2 (mxtx2), mRNA. ACCESSION NM_001079816 NM_131559 VERSION NM_001079816.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC115163.1. On Dec 20, 2007 this sequence version...
Synonym: mtx2; zgc:136526
NM_001079816.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131354 3994 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio SIX homeobox 7 (six7), mRNA. ACCESSION NM_131354 XM_682110 VERSION NM_131354.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC064701.1. On or before Jul 6, 2005 this sequence version replaced XM...
NM_131354.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131123 696 bp mRNA linear VRT 13-JUL-2025 DEFINITION Danio rerio homeobox C6a (hoxc6a), mRNA. ACCESSION NM_131123 VERSION NM_131123.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AF071265.1. Publication Note: This RefSeq record includes a subset of the...
Synonym: HOX-C6; hoxc-6; hoxc6; ZF-61; zgc:101882
NM_131123.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131634 2069 bp mRNA linear VRT 21-NOV-2025 DEFINITION Danio rerio H6 family homeobox 3a (hmx3a), mRNA. ACCESSION NM_131634 VERSION NM_131634.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JBMGRA0117.1. On Jun 25, 2025 this sequence version replaced NM_131634.2....
Synonym: hmx3; Nkx5-1; nkx5.1; zgc:109845
NM_131634.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
less homeobox protein 2b; distal-less homeobox gene 5; distal-less homeobox gene 2b" /codon_start=1 /product="homeobox protein Dlx2b" /protein_id="NP_571372.1" /db_xref="GeneID:30557" /db_xref="ZFIN:ZDB-GENE-980526-18" /translation="MTAVLDSLGSDMHTNHITSSSFSTVHKSQDSPTLPVSTVTDSSFFSSSQTGHCAGTAYAQLASYSYHPGTVGNVHYSPKAYDLGYASSYGAYGTYGASSSPTPTEPEKEESEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLWKNGEIPADQQVASGDSPSSSPPPQAGWDFPPNPTQNDGDTVSEQPTGPPNTTAPSFLTNYSWYSSTNAVTHLQPSTLIQPHHSSAMSTGTIF" misc_feature 205..426 /gene="dlx2b" /gene_synonym="dlx5" /note="Homeobox protein distal-...
Synonym: dlx5
NM_131297.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001030269 1322 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio muscle segment homeobox 2a (msx2a), mRNA. ACCESSION NM_001030269 NM_131274 XM_690624 VERSION NM_001030269.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC095602.1. On or before May 22, 2007 this...
Synonym: msh-A; mshA; msxa; zgc:111929
NM_001030269.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131462 1712 bp mRNA linear VRT 14-DEC-2025 DEFINITION Danio rerio visual system homeobox 2 (vsx2), mRNA. ACCESSION NM_131462 XM_001334034 VERSION NM_131462.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JBMGRA0117.1. On Jun 25, 2025 this sequence version replaced...
Synonym: alx; chx10; Vsx-2
NM_131462.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131535 1366 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio homeobox A4a (hoxa4a), mRNA. ACCESSION NM_131535 XM_680783 XM_703073 XM_703074 VERSION NM_131535.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC122457.1. On or before Aug 28, 2006 this sequence...
Synonym: hoxx4; hoxzf26; im:6899783; ns:zf-es36; zf-es36
NM_131535.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131115 1069 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio homeobox B1a (hoxb1a), mRNA. ACCESSION NM_131115 VERSION NM_131115.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC162942.1. On Jun 9, 2015 this sequence version replaced NM_131115.1. Publication...
Synonym: hoxb1; id:ibd3532; sb:eu402; Z-3
NM_131115.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131142 1628 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio homeobox B1b (hoxb1b), mRNA. ACCESSION NM_131142 VERSION NM_131142.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC133876.1. On Apr 15, 2007 this sequence version replaced NM_131142.1. Publication...
Synonym: cb249; Hoxa-1; hoxa1; id:ibd5001
NM_131142.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131044 2901 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio engrailed homeobox 2a (en2a), mRNA. ACCESSION NM_131044 NM_001128823 VERSION NM_131044.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JBMGRA017.1. On or before Jun 6, 2012 this sequence version...
Synonym: ENG-2; eng2; eng2a; Zf-en; ZF-EN-2
NM_131044.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_153654 2597 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio pbx/knotted 1 homeobox 2 (pknox2), transcript variant 1, mRNA. ACCESSION NM_153654 VERSION NM_153654.3 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...misc_feature 401..658 /gene="pknox2" /gene_synonym="ft92g05; id:ibd2866; prep2; wu:ft92g05; zgc:136733" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:465140" misc_feature order...
Synonym: ft92g05; id:ibd2866; prep2; wu:ft92g05; zgc:136733
NM_153654.3 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131300 1215 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio distal-less homeobox 4a (dlx4a), mRNA. ACCESSION NM_131300 XM_005163982 VERSION NM_131300.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH441414.1, EH591391.1 and JBMGRA013.1. On or before Feb...
Synonym: DLX-8; dlx8
NM_131300.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131532 1770 bp mRNA linear VRT 13-JUL-2025 DEFINITION Danio rerio homeobox A9a (hoxa9a), mRNA. ACCESSION NM_131532 VERSION NM_131532.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC090700.1. On Apr 20, 2005 this sequence version replaced NM_131532.1. Publication...
Synonym: fd07f09; hoxx9; wu:fd07f09; z-10; zgc:110505
NM_131532.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131783 1635 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio SIX homeobox 2a (six2a), mRNA. ACCESSION NM_131783 VERSION NM_131783.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii;...Biochem 47 (5), 1507-1525 (2021) PUBMED 34338990 REFERENCE 6 (bases 1 to 1635) AUTHORS Ogawa,Y., Shiraki,T., Kojima,D. and Fukada,Y. TITLE Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish JOURNAL Proc Biol Sci 282 (1812), 20150659 (2015) PUBMED 26180064...
Synonym: six2.1; wu:fj04e08; zgc:91945
NM_131783.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131166 1644 bp mRNA linear VRT 20-NOV-2025 DEFINITION Danio rerio homeobox D10a (hoxd10a), mRNA. ACCESSION NM_131166 VERSION NM_131166.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CK864624.1, BC071329.1 and CT704711.2. On Jun 16, 2010 this sequence version...
Synonym: HOX-D10; hoxd-10; hoxd10; z-82
NM_131166.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131101 1800 bp mRNA linear VRT 04-JAN-2026 DEFINITION Danio rerio homeobox B5a (hoxb5a), mRNA. ACCESSION NM_131101 VERSION NM_131101.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC071493.1. On Oct 16, 2004 this sequence version replaced NM_131101.1. Publication...
Synonym: hox-2.1; hox-B5; hoxb5; wu:fc38c09; z-18; ZF-21; ZF21
NM_131101.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_001080025 1647 bp mRNA linear VRT 05-JAN-2026 DEFINITION Danio rerio POU class 2 homeobox associating factor 2b (pou2af2b), mRNA. ACCESSION NM_001080025 XM_689358 VERSION NM_001080025.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JBMGRA015.1. On Jun 27, 2024 this...
Synonym: pou2af2; si:dkey-180i4.1; zgc:158412
NM_001080025.2 -
Danio rerio (zebrafish) -
NCBI -
UCSC
LOCUS NM_131167 1410 bp mRNA linear VRT 21-NOV-2025 DEFINITION Danio rerio homeobox D11a (hoxd11a), mRNA. ACCESSION NM_131167 XM_001922749 VERSION NM_131167.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JBMGRA019.1. On May 8, 2009 this sequence version replaced XM...
Synonym: fk50b10; hoxc11; hoxd-11; hoxd11; sb:eu641; wu:fk50b10
NM_131167.1 -
Danio rerio (zebrafish) -
NCBI -
UCSC
Data Export:
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Redirect URI : https://ggrna.dbcls.jp/ja/dr/homeobox
lang : ja |
div : |
spe : dr |
query_string : homeobox |
format : html |
download :
0.000 | 0.000 | search_start;
0.077 | 0.077 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Danio rerio (zebrafish)?to=0&format=json
0.133 | 0.056 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:homeobox)%7C(nt:homeobox)%7C(aa:homeobox))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.139 | 0.005 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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