LOCUS       NM_001080058            2330 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio POU class 4 homeobox 4 (pou4f4), mRNA.
ACCESSION   NM_001080058 XM_695754
VERSION     NM_001080058.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Ezhkova,D., Schwarzer,S., Spiess,S., Geffarth,M., Machate,A.,
            Zoller,D., Stucke,J., Alexopoulou,D., Lesche,M., Dahl,A. and
            Hans,S.
  TITLE     Transcriptome analysis reveals an Atoh1b-dependent gene set
            downstream of Dlx3b/4b during early inner ear development in
            zebrafish
  JOURNAL   Biol Open 12 (6) (2023)
   PUBMED   37272628
REFERENCE   2  (bases 1 to 2330)
  AUTHORS   Weger,B.D., Weger,M., Gorling,B., Schink,A., Gobet,C., Keime,C.,
            Poschet,G., Jost,B., Krone,N., Hell,R., Gachon,F., Luy,B. and
            Dickmeis,T.
  TITLE     Extensive Regulation of Diurnal Transcription and Metabolism by
            Glucocorticoids
  JOURNAL   PLoS Genet 12 (12), e1006512 (2016)
   PUBMED   27941970
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC128835.1.
            
            On Mar 11, 2007 this sequence version replaced XM_695754.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC128835.1, EH583998.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505370, SAMEA3505371
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="21"
                     /map="21"
     gene            1..2330
                     /gene="pou4f4"
                     /gene_synonym="zgc:158291"
                     /note="POU class 4 homeobox 4"
                     /db_xref="GeneID:572084"
                     /db_xref="ZFIN:ZDB-GENE-061215-70"
     exon            1..285
                     /gene="pou4f4"
                     /gene_synonym="zgc:158291"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    94..96
                     /gene="pou4f4"
                     /gene_synonym="zgc:158291"
                     /note="upstream in-frame stop codon"
     CDS             166..1197
                     /gene="pou4f4"
                     /gene_synonym="zgc:158291"
                     /codon_start=1
                     /product="Brain-specific homeobox/POU domain protein
                     3-like"
                     /protein_id="NP_001073527.1"
                     /db_xref="GeneID:572084"
                     /db_xref="ZFIN:ZDB-GENE-061215-70"
                     /translation="

MMSMNSKQPFSMHPILHEPKYTPLHSSSEAIRRACLPTPSLQGNIFAGFDETLLQRAEALAAVDIVAQKSHPFKPDATYHTMTTMTSMTCTPTSSSGHLHHPSVLTSHHHHPHHQPTQGLEGDLLDHLPGISIGGMPGSDVCSTASHPHSHMSAINHMQHHHPQSMNMHPHGLGSHASLGGVGDSEPDPRELESFAERFKQRRIKLGVTQADVGSALANLKIPGVGCLSQSTICRFESLTLSHNNMVALKPILEAWLEEAERAQREKMAKPEIFNGGDKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSATH"

     misc_feature    715..948
                     /gene="pou4f4"
                     /gene_synonym="zgc:158291"
                     /note="Found in Pit-Oct-Unc transcription factors; Region:
                     POU; smart00352"
                     /db_xref="CDD:197673"
     misc_feature    1003..1173
                     /gene="pou4f4"
                     /gene_synonym="zgc:158291"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            286..2313
                     /gene="pou4f4"
                     /gene_synonym="zgc:158291"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctcgcgcctggctacagctcagagccagtgaagaagacttctctggcataccttttcactttttatcatccagatcgtccctgggttccgaggtagatactgttctggaacaaaacggagataaacgaggaagacgagaagccaccctttctcacctctgccataatgatgtccatgaatagcaaacagccgtttagtatgcatccgattttgcacgagcctaaatacacacctctccattccagctcggaggctattaggcgagcatgtttgcccacgccctcgctgcagggtaacatctttgccggctttgatgagaccctgcttcagagagccgaggcgctggcggcggtggacatcgtcgcgcaaaaaagtcatccgttcaaaccagatgccacctaccacaccatgaccaccatgacaagcatgacctgcacgcccacgtcctcctccggacacctacatcatccgtcagtgttgacctctcaccaccatcatccccaccaccagccaacccagggcctggagggcgacctgcttgaccacctccccggcatctctatcggaggcatgccgggctccgacgtttgctccacggcttcccacccgcattcgcacatgtccgctatcaaccacatgcagcatcaccacccgcaaagcatgaacatgcacccccacggcctgggctcgcacgcctctctgggcggcgttggagactccgagcccgacccccgggagctggagtctttcgccgagcgcttcaagcagaggcggatcaaactcggggtcacgcaggccgacgtgggctcggcgttagccaaccttaaaatccccggggtcggctgcctgagccagagtactatctgtcggtttgagtctctcactttgtcccacaataacatggtggccctcaagcccattctggaagcatggttagaggaggcagaacgggctcagagggagaaaatggccaagccggagatttttaacggcggggacaaaaagagaaaacgcacttcgatcgccgctccagaaaagcggtcgctggaggcttactttgccgtccagcccagaccctcgtcggagaaaatcgctgccatcgccgagaaactggacctgaaaaaaaacgtggtccgcgtgtggttttgtaatcaaaggcaaaagcagaaacgcatgaagttttcggccacgcactaggcccgaataatgtattaaaaacaaactcaaataatcagacacacgagtgaacagagacgacaaaactcttcgaggctgaggcgaaacgcttcccacgcaggaacaggagctgggcgtcaacatcccagagacagaagtgctccaaaagtttgtcgtaacaaaacatgtcgagaacaactcgctctggaagacggaggacgagaggaaaattaacaccaactaaacgttgcaattattgtacaaaacgagaattgaataataatgattattctcctaactttaaaacaactcttttatattcatctgtgtacatacctgtgaatacactgcacctctttgtgtgaagaacgcatcaaaattctgttttttaaaggacgaaaagaaagcaagctaaaacgctgttgtgcaaaagatgttccattctagaaaacttagtgttgttctatatgctccagaagaaaatcatgaaggttctgttgtgacccattgcatggtttacaaggcgttaagtgttcatttattgtttggagttttcattcgttttgatgtattgcaataagagagaacacgcacaggcgaacgcacgtacacacggacatacttaatatacttttctgtgtctacctcatgattcctgacgtcttgacacattcatggtcatattggaaatagggcgtaaatctagttttcagttgacacattttgggtaaaattagataggaagcacgaagcgttgtgtgttgcaactaatttcacttcaacaaagctttgacaatcaaattaagaattattttgtgactagccccttctactgtatgtctccgcttaaattattattattattattattattattattattattattattacactaagtttgtagatgggaacatttcattttatgttcagagattcattgcactttgtagatatgattgcgactccttatttgttttgcctatttatattctttcttgattcgttgattttgtttacttatttatttgagcttaatttattttcaatatcacacatgtttcatttgtgaaagtgtgcttaactgtgtctgtgtacgcgacagaaatttcaataaaccatgcacgtcttacctcaaaaaaaaaaaaaaaaaa

//