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2024-04-25 13:05:22, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Danio rerio claudin domain containing 1b (cldnd1b), mRNA. (1797 bp)
gene_synonym="zgc:100913" /codon_start=1 /product="claudin domain-containing protein 1b" /protein_id="NP_001155069.1" /db_xref="GeneID:554386" /db_xref="ZFIN:ZDB-GENE-040808-4" /translation="MVDNRYATALVIGSVLSLLATVYLSVAMGTQHWFQYHSQPASNDINNGSDLQNLRLDFEGEDVDEMSYSKALFQLNGTLGLWWRCIRVHQDSHWFKAPDPVMVTKCQAFTLQQQWESKYKSPGNINTGEDLLRTYLWKCQFLLPLISVGLVFLAALIGVCACLCRSITPTLFVGLLHLMAGLCSLGTVCCFLTGLHLLHDISELPEGMDYSPGWSLFLALVSSPLQVMAAALFIWAARSHRQHYTRMTAYRVA" misc_feature 283..933 /gene="cldnd1b" /gene_synonym="zgc:100913" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Synonym: zgc:100913
NM_001161597.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 10b (cldn10b), mRNA. (1722 bp)
LOCUS NM_001020613 1722 bp mRNA linear VRT 12-APR-2020 DEFINITION Danio rerio claudin 10b (cldn10b), mRNA. ACCESSION NM_001020613 NM_001113655 XM_696795 VERSION NM_001020613.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 83..610 /gene="cldn10b" /gene_synonym="zgc:110625" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 294..455 /gene="cldn10b" /gene_synonym="zgc:110625" /inference="alignment:Splign...
Synonym: zgc:110625
NM_001020613.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 26 (cldn26), mRNA. (663 bp)
misc_feature 40..549 /gene="cldn26" /gene_synonym="cldn25-like; si:dkey-98f17.3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 1..663 /gene="cldn26" /gene_synonym="cldn25-like; si:dkey-98f17.3" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 663) AUTHORS Baltzegar DA, Reading BJ, Brune ES and Borski RJ. TITLE Phylogenetic revision of the claudin gene family JOURNAL Mar Genomics 11, 17-26 (2013) PUBMED 23726886...
Synonym: cldn25-like; si:dkey-98f17.3
NM_001122706.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 8.3 (cldn8.3), mRNA. (1313 bp)
product="claudin-17" /protein_id="NP_001104000.1" /db_xref="GeneID:100001934" /db_xref="ZFIN:ZDB-GENE-070821-2" /translation="MVQGPCDVIALCLSLIGLIGVATVTALPMWRVTAFIGENIIVMETRWEGLWMNCYRQANIRMQCKVYDSLLYLPPDLQAARGLTCCSLALCGFGIIVSLFGLRCMSCLSDQPRNKSIILMITGIIEILASFCIVIPVSWTAHTIIRDFYNPLLLDAQRRELGEALYIGWVTSAFLLASGVIFLCRRVDSNEQPFYARPPRNKQVPNHFQTFNSIRRQPLLQNNSFSTPQHSSAAFSFAVTPSSGQYSQHNVQPVVNGSLIYSPNMIPPQRVNYNGQNVMQSQILASNSQHPVSDPRDSFNTGSAFHPVQQNPLYVGYNYSRVQSGSSNSSTGLRI" misc_feature 270..779 /gene="cldn8.3" /gene_synonym="cldn17; cldn8c; zgc:173444" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
Synonym: cldn17; cldn8c; zgc:173444
NM_001110530.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 33b (cldn33b), mRNA. (1029 bp)
EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1029) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1029) AUTHORS Baltzegar DA, Reading BJ, Brune ES and Borski RJ. TITLE Phylogenetic revision of the claudin gene...
Synonym: zgc:153311
NM_001045383.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin k (cldnk), mRNA. (1270 bp)
gene="cldnk" /gene_synonym="cldn31a; zgc:91878" /note="claudin 31" /codon_start=1 /product="claudin k" /protein_id="NP_001003464.1" /db_xref="GeneID:445070" /db_xref="ZFIN:ZDB-GENE-040801-201" /translation="MATTGMQLLGLVLSIIGLVGGFLVCTLPMWRVTAFIGNNIVTAQITWEGLWMNCIWQSTGEIQCKGYDSLLALPSDMKAARGLTVLAILICSLSLTLGILGIKCTECVGLPSLKARLARVSGVLFVIAGFLILVPVCWTAHSIIRDFYDPYVAAPHKRELGPALYLGWGASALLLIGGSLLYAGSNPPGIPSSPTFSSDESSPRRAGGSSQVKGYV" misc_feature 380..913 /gene="cldnk" /gene_synonym="cldn31a; zgc:91878" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: cldn31a; zgc:91878
NM_001003464.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 7b (cldn7b), mRNA. (1976 bp)
synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="claudin-like protein ZF4A22; claudin-7" /codon_start=1 /product="claudin-7-B" /protein_id="NP_571712.1" /db_xref="GeneID:60635" /db_xref="ZFIN:ZDB-GENE-001103-5" /translation="MAHKGLQLLGFTLSLLGLIGLIIGTIMPQWKMSAYVGDNIITAIAMYQGLWMSCAYQSTGQQQCKVYDSVLQLDSALQATRALMVVAILLTVAGLGVASMGMKCTNCGGDDKVKKSRIAMTGGIILSVGALCSIVACGWFTSQIIRDFYNPFTPVNTKYEFGAAIFIAWAGAFLDIMGGGMLASSCSKGQSSPNYPKSSRPVKSSRPPSSSKEYV" misc_feature 190..726 /gene="cldn7b" /gene_synonym="cb388; claudin7; cldn7; fd19f08; wu:fd19f08" /note="PMP-22/EMP/MP20/Claudin family; Region:...
Synonym: cb388; claudin7; cldn7; fd19f08; wu:fd19f08
NM_131637.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 30 (cldn30), mRNA. (2025 bp)
LOCUS NM_001040360 2025 bp mRNA linear VRT 28-DEC-2020 DEFINITION Danio rerio claudin 30 (cldn30), mRNA. ACCESSION NM_001040360 VERSION NM_001040360.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii...inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 109..642 /gene="cldn30" /gene_synonym="zgc:136892" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 2025) AUTHORS Elkon R, Milon B, Morrison L, Shah M...
Synonym: zgc:136892
NM_001040360.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 3d (cldn3d), mRNA. (1863 bp)
stop codon" CDS 316..972 /gene="cldn3d" /gene_synonym="cldnc" /note="claudin c" /codon_start=1 /product="claudin 3d" /protein_id="NP_571839.1" /db_xref="GeneID:81582" /db_xref="ZFIN:ZDB-GENE-010328-3" /translation="MASFGLELVGVTLSVLGWILNIVCCALPMWRVTAFIGTNIVTAQVYWEGIWMSCVVQSTGQMQCKVYDSMLALPADLQAARALVVVAIIVGVLALFVAIVGAKCTNCIEEEAAKARVMISSGAAFITASVLQLIPVCWSAHTVILEFYSPLVPEAQKMEIGASLYLGWAASAMLLVGGSILCCSCPPKDETRYPPQSRIAYSAHHSVAPSTYNKRDYV" misc_feature 328..858 /gene="cldn3d" /gene_synonym="cldnc" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: cldnc
NM_131764.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 23.1 (cldn23.1), mRNA. (1952 bp)
LOCUS NM_001386714 1952 bp mRNA linear VRT 28-DEC-2020 DEFINITION Danio rerio claudin 23.1 (cldn23.1), mRNA. ACCESSION NM_001386714 XM_001337411 VERSION NM_001386714.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata;...ab initio prediction:SignalP:4.0" misc_feature 50..574 /gene="cldn23.1" /gene_synonym="cldn23a; cldn23a2; si:ch211-95j8.2" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1 (bases 1 to 1952) AUTHORS Mathiyalagan N, Miles LB, Anderson...
Synonym: cldn23a; cldn23a2; si:ch211-95j8.2
NM_001386714.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 10a (cldn10a), mRNA. (711 bp)
LOCUS NM_001007037 711 bp mRNA linear VRT 14-OCT-2021 DEFINITION Danio rerio claudin 10a (cldn10a), mRNA. ACCESSION NM_001007037 VERSION NM_001007037.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;...SignalP:4.0" misc_feature 10..537 /gene="cldn10a" /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3; si:dz52i16.3" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 1..220 /gene="cldn10a" /gene_synonym="cldn10; dZ52I16.3; si:busm1-52i16.3; si:...
Synonym: cldn10; dZ52I16.3; si:busm1-52i16.3; si:dz52i16.3
NM_001007037.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 8.2 (cldn8.2), mRNA. (1786 bp)
="claudin 8-like" /codon_start=1 /product="uncharacterized protein LOC550497" /protein_id="NP_001017799.1" /db_xref="GeneID:550497" /db_xref="ZFIN:ZDB-GENE-050417-331" /translation="MSYTAGSYTAKSYADKSYADKSYADKSYAYTGYTDEKSAQEAYDEQLKKEKRKRRDSMCCEVVALIIGFVGLIGVAAVTGLPMWKVTAFIQENIIVMETRWEGLWMNCYRQANIRMQCKVYDSLLYLPPDLQAARGLMCSSVALTAIGCIVATVGMRCTRLVDSRPKVKHIVLVSGGCLFLAGCLTTIIPVSWTAHVIIQDFYNPLLIDAQRRELGEALYVGWVTSALLFIAGVILLCRHAPRTQAKEDMATVLYRAGSAPYNYSYAPGYGYQPPYGYQPGYTYQPTYSPVPPTVYSQPRY" misc_feature 656..1180 /gene="cldn8.2" /gene_synonym="cldn8d; sb:cb574; zgc:110333" /note="PMP-22/EMP/MP20/Claudin...
Synonym: cldn8d; sb:cb574; zgc:110333
NM_001017799.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 29 (cldn29), mRNA. (1092 bp)
codon" CDS 22..654 /gene="cldn29" /gene_synonym="zgc:112437" /codon_start=1 /product="claudin 29" /protein_id="NP_001017771.1" /db_xref="GeneID:550468" /db_xref="ZFIN:ZDB-GENE-050417-293" /translation="MASLGMQILGVALSFVGTLGSIITCVLPMWRVTAFIGNNIVTAQMIWEGLWIVCVVQSTGQMQCKLYESMLALEPDLQAARALLVVSILLSILAVLLAVVGGKCTTCIENKSAKARVVVSAGVIFLLSGLLCLTPVCWTAHNTIRDFYNPLLQDAQRRELGAALYTGWGSAGLMLIGGAILCCQCPAKDQRAFVAKYPAPKSNGSDKEFV" misc_feature 34..564 /gene="cldn29" /gene_synonym="zgc:112437" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1...
Synonym: zgc:112437
NM_001017771.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin i (cldni), mRNA. (1697 bp)
cldn32; etID38174.3; fb52b12; wu:fb52b12" /codon_start=1 /product="claudin i" /protein_id="NP_571843.1" /db_xref="GeneID:569084" /db_xref="ZFIN:ZDB-GENE-010328-9" /translation="MGSAGVQIVCVALGILGLIATVVTIAIPQWKTSAFIGQNIITAQVSEEGLWMQCVVQSTGQQQCKSYDSLLILSSDLQAARAMTIISCMLSVLSLLILCGGADFTTCIENEDVKPKVTLVSAIGLILAGLLVIIPVSWAANNVVRDFNNPMVPEAQKRELGPCIYIGWASGVLLILAGGLLCCFSRPRSSGSSGAAKYYSNSASAPSKNYV" misc_feature 115..657 /gene="cldni" /gene_synonym="b52b12; cldn32; etID38174.3; fb52b12; wu:fb52b12" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 247..1697 /...
Synonym: b52b12; cldn32; etID38174.3; fb52b12; wu:fb52b12
NM_131768.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 15b (cldn15b), mRNA. (2208 bp)
product="claudin-15b precursor" /protein_id="NP_001035404.1" /db_xref="GeneID:678556" /db_xref="ZFIN:ZDB-GENE-060421-7652" /translation="MQNILQIFALLLGFLGCGSAVLSLYNHYWKVSTDDDSVIITSNIFENLWMSCADDSSGTFSCRDFQSLLALPGYIQACRALIITSIVLGTFGLVATLVGMQCFKIGGGNYIMKSRIAGAGGVFFILQGLCTMTAVSWYAFNITQEFFDPLYPGIKYEIGEGLYIGWSSATLALCSGSCLLCSCGLCTPMGKKSFRQSHLQDFRSSHQPQSINIVPTVSTTSHYLSRQYV" sig_peptide 166..225 /gene="cldn15b" /gene_synonym="zgc:136755" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 193..693 /gene="cldn15b" /gene_synonym="zgc:136755" /note="PMP-22/EMP/MP20/Claudin family;...
Synonym: zgc:136755
NM_001040314.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 15-like b (cldn15lb), mRNA. (1530 bp)
="claudin 15-like b precursor" /protein_id="NP_001002446.2" /db_xref="GeneID:436719" /db_xref="ZFIN:ZDB-GENE-040718-145" /translation="MAVMVLQVLGLFLGIVGWCLESSSINSSVWKSSSHGEAVVTASSQFEGLWFSCASNSLGAIHCQRFKTTLGLPGYIQACRALMIIALILGLLSVVLASMGLKCTKLGSTSEEAKGKISLTAGIMFILSGLCVIVAVSWYAARVVQEFNDPFYGGTKYELGAGLYLGWAAAALCILGGGTLCTSFKGSSPAQTRGPGYNYSAAQPQKIYRSAPSDNSITKAYV" sig_peptide 127..183 /gene="cldn15lb" /gene_synonym="cldn10l1b; zgc:92349" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 136..657 /gene="cldn15lb" /gene_synonym="cldn10l1b; zgc:92349" /note="PMP-22/EMP/MP20/Claudin...
Synonym: cldn10l1b; zgc:92349
NM_001002446.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 10-like 2 (cldn10l2), mRNA. (992 bp)
cdn10c; fj92c04; wu:fj92c04" /codon_start=1 /product="claudin 10-like 2" /protein_id="NP_001191200.1" /db_xref="GeneID:553386" /db_xref="ZFIN:ZDB-GENE-030131-9598" /translation="MRKRLIQVLGFLISTFGWLFVSCTLAMDYWRILYVGGKGGNWMVKASWYWSNLWKDCVTDMSSISDCRDYDALWAVTPYVQAVRGLLMIAMGLGFIAAILCFIGMECTYIGGSEKNKRRVLLAGAALHFAGGLSAAAAYCLYTNRVARAAFAPAVDTTIIRYGIGAPVFFGLVGSFLIILGSALYAVTHISTRKKTVSVGRTLYTRPSYGRRTASKTAYTSAYSAPSRQSSSRLSRMSQATDEKLPARDTFV" misc_feature 182..727 /gene="cldn10l2" /gene_synonym="cdn10c; fj92c04; wu:fj92c04" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Synonym: cdn10c; fj92c04; wu:fj92c04
NM_001204271.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 8.1 (cldn8.1), mRNA. (1880 bp)
fa01e05; zgc:91900" /note="claudin 8" /codon_start=1 /product="claudin-8" /protein_id="NP_001003733.1" /db_xref="GeneID:445278" /db_xref="ZFIN:ZDB-GENE-011018-1" /translation="MASGALEIVGMCVTIIGLIGVSASTGMPMWRVTAFIGENIIVMETRYEGLWMNCYRQANIRMQCKVYDSLLALTPDLQAARGLMCTSVALTGVGLLIAIVGMKCTACIQDNDRAKRMVLIISGCMILAGCFCCLIPVSWTGNAIIRDFYNPLLIDAQRRELGEALYIGWVSSAFLFAGGCIFICCSGSLDKGPDPKYMYSRNAPAPYVAYQPQPVAYHPQPRSVYSPSGPPSFIEQSYQPSRQQSFIQPSRQQSFIQPSRHPSARSAVAYL" misc_feature 32..565 /gene="cldn8.1" /gene_synonym="cldn8; cldn8b; wu:fa01e05; zgc:91900" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin...
Synonym: cldn8; cldn8b; wu:fa01e05; zgc:91900
NM_001003733.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 7a (cldn7a), mRNA. (1592 bp)
CDS 197..835 /gene="cldn7a" /gene_synonym="zgc:92192" /note="claudin 7 like" /codon_start=1 /product="claudin-7-A" /protein_id="NP_001002340.1" /db_xref="GeneID:436612" /db_xref="ZFIN:ZDB-GENE-040718-29" /translation="MANSGVQLLGFGLSLIGIIGLIVGTILPQWKMSAYVGDSIITAVATYQGLWMSCAFQSTGQLQCKIYDSILQLDSDLQATRALMIVGIIVSIAGLGVASIGMKCTTCGADDKVRKTRTAMTGGIILLVGALCAVVACSWFAHNVIRAFYNPFTPVNTKFEFGAAIFIAWGGSFLDVLGGAMLAASCPRSKQVSKYPKSNSTRSANGSNKEYV" misc_feature 206..742 /gene="cldn7a" /gene_synonym="zgc:92192" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature...
Synonym: zgc:92192
NM_001002340.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 1 (cldn1), mRNA. (809 bp)
note="claudin 19" /codon_start=1 /product="claudin-1 precursor" /protein_id="NP_571845.1" /db_xref="GeneID:81590" /db_xref="ZFIN:ZDB-GENE-010328-11" /translation="MAHAGLQMLGYCLGFLGLLGLIASTAMAEWKMSSYAGDNIITAQAQYEGLWQSCVSQSTGQLQCKKYDSLLKLPGEIQGARGLMLTGIFLCGLSTLVSFVGMKCTTCLSEAPQVKSKVALAGGVLFITGGLFALIATSWYGEKIRQKFFDPFTPTNARYEFGKALYVGWGSSALSIIGGSLLCCICGSEASEKPSYPPARAAGRPGTDRV" sig_peptide 2..85 /gene="cldn1" /gene_synonym="cldn19" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 71..547 /gene="cldn1" /gene_synonym="cldn19" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_...
Synonym: cldn19
NM_131770.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin a (cldna), mRNA. (1882 bp)
REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AF359423.1. On Oct 7, 2002 this sequence version replaced NM_131762.1. Summary: This gene encodes a member of the claudin family. As the major transmembrane proteins of tight junctions, claudins mediate cellular adhesion and migration. Claudins are also thought to play a role in morphogenesis. [provided by RefSeq, Jul 2008]. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access...
Synonym: cldn30a; fb99d09; wu:fb99d09
NM_131762.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 5a (cldn5a), mRNA. (1632 bp)
product="claudin 5a precursor" /protein_id="NP_998439.1" /db_xref="GeneID:406559" /db_xref="ZFIN:ZDB-GENE-040426-2442" /translation="MASAALELLGLILCVCGTLLEMVACGLPTWKVTAFIEANIVVAQTIWDGLWMSCAVQSTGQMQCKVHDSMLALSHDLQAARALTVISSVLSVLALMVVIAGAQCTNCIKEDNVKARVVNVGGVIYILSAIFVLVPLCWMANNIISDFYNPQVLPAQKREIGAALYIGWAASALLLLGGSILCCSCPASGSSGYSVKYAPTKRATSNGEYDKRNYV" sig_peptide 306..380 /gene="cldn5a" /gene_synonym="cldn5; zgc:85723" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 318..848 /gene="cldn5a" /gene_synonym="cldn5; zgc:85723" /note="PMP-22/EMP/MP20/Claudin family; Region:...
Synonym: cldn5; zgc:85723
NM_213274.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 5b (cldn5b), mRNA. (1661 bp)
CDS 88..750 /gene="cldn5b" /gene_synonym="zgc:103419" /codon_start=1 /product="claudin-5b" /protein_id="NP_001006044.2" /db_xref="GeneID:450023" /db_xref="ZFIN:ZDB-GENE-041010-140" /translation="MANMISACLEIVGLCLTVTGTLLVMVACGLPMWKVSAFIEGNIVVAQNIWDGLWMSCVVQSTGQMQCKMHDSVLALTTDLQTARALTVISAVLGVLALMITIAGAQCTNCINTESIKSKVVNAGGVMYIVAGLFVLIPLCWMANNIISDFYDPQVPYAKKREIGAALYIGWAASAMLLVGGAILCFSRPHDEKSTYPLKYIPPPTKGTSINGDYDKRNYV" misc_feature 139..639 /gene="cldn5b" /gene_synonym="zgc:103419" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1...
Synonym: zgc:103419
NM_001006044.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 11b (cldn11b), mRNA. (2472 bp)
cldn11; fb97c11; wu:fb97c11" /note="claudin 11" /codon_start=1 /product="claudin-11b" /protein_id="NP_571847.2" /db_xref="GeneID:81592" /db_xref="ZFIN:ZDB-GENE-010328-13" /translation="MSNSCRLLCGFLMSFVGWIGIIIATSTNDWVLSCTYGSHSCRNMDDLETKGLWTECVISTALYHCIPLNQVRRIPAYIQACRVLMVSASLLGLPALALLLLAMPCVKVSQETEGTKHRRAVQGGLIILVISLCGMVSTVWFPIGKLDGLMSFGFSLYAGWVGSALCFFAGSVMVCCSKDHSPSENPESRHYYSNPDGVTSTGPSENPETRYYYSNHDGVTSSGTSENQETRFYYSNHDGVTSYGPAKNSHAKSEHV" misc_feature 157..648 /gene="cldn11b" /gene_synonym="cldn11; fb97c11; wu:fb97c11" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_...
Synonym: cldn11; fb97c11; wu:fb97c11
NM_131772.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 11a (cldn11a), mRNA. (1290 bp)
CDS 147..794 /gene="cldn11a" /gene_synonym="zgc:92247" /codon_start=1 /product="claudin-11a" /protein_id="NP_001002624.1" /db_xref="GeneID:436897" /db_xref="ZFIN:ZDB-GENE-040718-369" /translation="MANTCLQFTGFVMSFLGWIGLIVATATNEWVFTCKYQMNTCRKMDELEAKGLWADCVISTALYHCITLTQILELPAYIQTSRALMVTASILGLPAVVMVLMSMSCINLGGEPESAKNKRSVLGGILILLTAFCGIVSTVWFPIGAHHEKGLMSFGFSLYSGWVGTALCLLGGCIISCCSVDSPATYTENNRFYYSKQGPAHTGPTSTNHAKSAHV" misc_feature 162..668 /gene="cldn11a" /gene_synonym="zgc:92247" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 373..537 /gene="cldn11a...
Synonym: zgc:92247
NM_001002624.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin f (cldnf), mRNA. (1796 bp)
sr:nyz177; wu:fb13d10; zgc:109866" /codon_start=1 /product="claudin f" /protein_id="NP_571841.2" /db_xref="GeneID:81585" /db_xref="ZFIN:ZDB-GENE-010328-6" /translation="MGRIAKEVAGQTLCFIGFVGICICCGIPMWRVTTYIGANIVTGQIVWDGLWMNCVMQSTGQMQCKIQDSIMNLTQDLQVARALVIISILIGFMGMLLTFIGGQCSSCLKNESSMAKVLILGGILCIVAGVLLLIPVCWSAAYTISDYVSVTTIQTQKRELGASIYVGWGASAFLLFGGIILCTSCPPRENIYPQYPGMYPYQGPVYGHQYAPSTVYKPYHPPVAYTPAPRQYL" misc_feature 26..550 /gene="cldnf" /gene_synonym="cldn28d; sr:nyz177; wu:fb13d10; zgc:109866" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN...
Synonym: cldn28d; sr:nyz177; wu:fb13d10; zgc:109866
NM_131766.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 15a (cldn15a), mRNA. (1314 bp)
gene_synonym="cldn15; cldn15l; zgc:63943" /note="claudin 15 like" /codon_start=1 /product="claudin-15a" /protein_id="NP_956698.1" /db_xref="GeneID:573644" /db_xref="ZFIN:ZDB-GENE-040426-1305" /translation="MDPIIEAVALFLGFVSWTMVGITIPNRYWKVSSLDGTVITTSTLYENLWMSCATDSTGVHQCREFPSLLALSGYIQASRALMIAAVVSGTFGVVATLIGMQCSKAGGENYVLKGRIAGTGGVFFLLQGLCTMISVSWYAANITQEFFNPLYPGQKYEIGEALYIGWASAVLAICGGVCLMFSCKLGTEKKTAYSYHPTRETVYSASASRRETQSTYGKNAYV" misc_feature 217..693 /gene="cldn15a" /gene_synonym="cldn15; cldn15l; zgc:63943" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Synonym: cldn15; cldn15l; zgc:63943
NM_200404.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 15-like a (cldn15la), mRNA. (935 bp)
cldn10; cldn10l; cldn10l1a" /note="claudin 10 like; claudin 10-like 1a" /codon_start=1 /product="claudin 15-like a" /protein_id="NP_571846.2" /db_xref="GeneID:81591" /db_xref="ZFIN:ZDB-GENE-010328-12" /translation="MSTALEVTGYFMCLIGWVLTGLAVANDYWKISSIQGNVIVSNRLYENLWHACGEDSTGKANCQDFQSMLALPVHIQACRALVIIALLLGLVGLVLSTMGLNCIKIGSKTDESKGKNMFIGGIIYLIGGLCTMVGVSWYAARVVQEFNDPFYGGVRFELGSGLYIGWAGAALCMLGGGFQCSAYQRFSKSKEKGAYYPAGKPQTIYTTAQSNAETSKAYV" misc_feature 104..631 /gene="cldn15la" /gene_synonym="cldn10; cldn10l; cldn10l1a" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="...
Synonym: cldn10; cldn10l; cldn10l1a
NM_131771.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 19 (cldn19), mRNA. (1461 bp)
codon" CDS 104..733 /gene="cldn19" /gene_synonym="zgc:112141" /codon_start=1 /product="claudin-19" /protein_id="NP_001017736.1" /db_xref="GeneID:550431" /db_xref="ZFIN:ZDB-GENE-050417-242" /translation="MANSGFQLLGYFLALGGWIGIISTTVLPQWKQSSYAGDAIIMAVGLYEGLWMSCASQSTGQVQCKIFDSLLSLDVNIQTCRALMVISVLMGFMGIIVSVVGMKCTKVGDNNPSTKSKIAISGGSLFLLSGVCTLVAVSWYAAQVSAHFFDPNTPTNAKYDFGTALFVGWAASVLMMLGGAFLCCSCINEDRRGQQFYRQSQPSTTREYV" misc_feature 113..649 /gene="cldn19" /gene_synonym="zgc:112141" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" exon 327..491 /gene="...
Synonym: zgc:112141
NM_001017736.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 2 (cldn2), mRNA. (1873 bp)
cldn2" /gene_synonym="zgc:92260" /codon_start=1 /product="claudin-2" /protein_id="NP_001004559.2" /db_xref="GeneID:562525" /db_xref="ZFIN:ZDB-GENE-040912-26" /translation="MAILALELMGFFFGLIGMLGTLVATLLPYWATSAHVGPNIVTAVVSMKGLWMECVYQSTGAFQCETYNTLLGLTVDLQAARAMMVMSSIFSVMACAVSTVGMQCTVCMDGSSVKTKVAGVGGSMFLLAGLLSLIPVAWKTHEVVQTFYMPNMPASLKFEIGDCLYVGLASSLLSMLGGGLLSASCCDDIDGNRGSRRHYPYPERNALRGPSHSMTYQPAALHSTTNPNITNKTQTLNSHTSSGTHSIQAQDSRKMTRQNTAAGYDVTGYV" misc_feature 206..694 /gene="cldn2" /gene_synonym="zgc:92260" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326"...
Synonym: zgc:92260
NM_001004559.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin b (cldnb), mRNA. (1145 bp)
gene="cldnb" /gene_synonym="cldn30c; wu:fa66b05" /codon_start=1 /product="claudin b" /protein_id="NP_571838.1" /db_xref="GeneID:81581" /db_xref="ZFIN:ZDB-GENE-010328-2" /translation="MASTGLQMLGIALAIFGWIGVIVLCALPMWKVTAFIGANIVTSQTSWEGIWMSCVVQSTGQMQCKVYDSMLALSSDIQAARALTVISIVIGVMGIMLSMAGGKCTNCIEEESSKAKVGITAGVIFIISGVLCLVPVCWTANAIIQDFYNPLVVQAQKREIGASLYIGWGASALLIIGGSLLCCHCPEKSDSGKYTAKYNATPRSEASAPSGKNFV" misc_feature 78..611 /gene="cldnb" /gene_synonym="cldn30c; wu:fa66b05" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1...
Synonym: cldn30c; wu:fa66b05
NM_131763.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin g (cldng), mRNA. (1070 bp)
cb214; cldn5l; zgc:136312; zgc:152655" /codon_start=1 /product="claudin-like protein ZF-A9" /protein_id="NP_851296.1" /db_xref="GeneID:81586" /db_xref="ZFIN:ZDB-GENE-010328-7" /translation="MSTGLQLLGTTLGTLGWLGIIISCAIPLWRVTAFIGNNIVTAQTMWEGLWMSCVVQSTGQMQCKVYDSMLALAQDLQASRAILVISAIVGLIAMFASFAGGKCTNCLADNSAKALVATTGGVAFIIAGILGLVPPSWTANTIIRDFYNPLVAEAQKREFGAAIFICWGAAVLLVIGGGLLCSSYPKGRTSSRGRYTPASQNGRERSEYV" misc_feature <274..687 /gene="cldng" /gene_synonym="cb214; cldn5l; zgc:136312; zgc:152655" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: cb214; cldn5l; zgc:136312; zgc:152655
NM_180965.5 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin domain containing 1a (cldnd1a), mRNA. (1675 bp)
LOCUS NM_199961 1675 bp mRNA linear VRT 08-OCT-2023 DEFINITION Danio rerio claudin domain containing 1a (cldnd1a), mRNA. ACCESSION NM_199961 VERSION NM_199961.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC060671.1. ##Evidence-Data-START## Transcript exon combination ::...
Synonym: fj30f10; wu:fj30f10; zgc:64190
NM_199961.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin j (cldnj), mRNA. (1681 bp)
gene="cldnj" /gene_synonym="cldn8l; fc30g01; wu:fc30g01" /codon_start=1 /product="claudin j" /protein_id="NP_571844.2" /db_xref="GeneID:81589" /db_xref="ZFIN:ZDB-GENE-010328-10" /translation="MALQVLGITLSMIGFAGTIIICALPMWKVTAFIGTNIVVAQVFWEGLWMTCVYERIGQMQCKLYDALLDLDPFLQASRGLIVTTMALASLAFLIFLIGADCTNCLSNPRAKGRIVVVSGITFMLSGLTTVVPVSWTADSIIRDFHNPVVHEALKREMGAALYVGWLTAGFLFIGGAILCTSCPPERDNYLPRYTLTKSGTHSGYAVKNYV" misc_feature 34..567 /gene="cldnj" /gene_synonym="cldn8l; fc30g01; wu:fc30g01" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN // REFERENCE 1...
Synonym: cldn8l; fc30g01; wu:fc30g01
NM_131769.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 3c (cldn3c), mRNA. (1880 bp)
cldn3c" /gene_synonym="cldnh; fc56d05; wu:fc56d05" /note="claudin h" /codon_start=1 /product="claudin 3c" /protein_id="NP_571842.1" /db_xref="GeneID:81587" /db_xref="ZFIN:ZDB-GENE-010328-8" /translation="MSMGLEIGGIALGIIGWIISIVACALPMWRVSAFVGANIVTAQVIWEGLWMNCVVQSTGQMQCKVYDSMLALGQDLQASRAMTVIAIILAVLGVMISVMGAKCTNCIEDEGAKAKVMIVSGIMFIIAGILDLIPSAWVANQIIRDFYNPLLPGAQQRELGASIYIGFAAAALLIIGGAMLCCTCPPKEKKYKPARMGYSAPRSASAGYDKKDYV" misc_feature 147..602 /gene="cldn3c" /gene_synonym="cldnh; fc56d05; wu:fc56d05" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326"...
Synonym: cldnh; fc56d05; wu:fc56d05
NM_131767.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin e (cldne), mRNA. (1955 bp)
gene_synonym="cb84; cldn28a; fb16e12; wu:fb16e12" /codon_start=1 /product="claudin e" /protein_id="NP_571840.1" /db_xref="GeneID:81584" /db_xref="ZFIN:ZDB-GENE-010328-5" /translation="MVSMCREILGMCLAIIGFLGAIIICALPMWKVTAFIGANIVTAQTIWEGLWMNCVMQSTGQMQCKIYDSLLALPQDLQAARALVVIAIIVSFFALILGIAGGKCTNFVEREDAKAKVSIASGVIFIIAGVLVLVPVCWSANTIIRDFYNPLLTDAQRREMGASLYIGWGVAALLIIGGGILCSSCPPKDEKYNMKYSQPRSTATSRAYV" misc_feature 58..591 /gene="cldne" /gene_synonym="cb84; cldn28a; fb16e12; wu:fb16e12" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" regulatory 1914..1919 /...
Synonym: cb84; cldn28a; fb16e12; wu:fb16e12
NM_131765.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin 12 (cldn12), mRNA. (3544 bp)
LOCUS NM_131773 3544 bp mRNA linear VRT 29-JUL-2023 DEFINITION Danio rerio claudin 12 (cldn12), mRNA. ACCESSION NM_131773 VERSION NM_131773.2 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CR848685.7 and EH545623.1. On Feb 18, 2016 this sequence version replaced NM_131773.1....
Synonym: wu:fc27c11; wu:fc37h01; zgc:86588
NM_131773.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio claudin d (cldnd), mRNA. (755 bp)
cldn29a; ns:zf-a310; zf-a310; zgc:101004" /codon_start=1 /product="claudin-like protein ZF-A89" /protein_id="NP_851295.1" /db_xref="GeneID:81583" /db_xref="ZFIN:ZDB-GENE-010328-4" /translation="MASVGLQLLATVLAIIGWLGEIVICALPMWKVTAFIGNNIVTAQIFWEGLWMNCVQQSTGQMQCKVYDSMLALPQDLQAARALVVISIIVTFMGVFLTIAGGKCTNCIEDQDAKAKVVVAAGVFFLVGGILCLIPVCWSANSVIKDFYNPTLSDAQKRELGASLFIGWCASGLLLLGGALLCCQCPKNEGRAYSVKYSAPRSAPGAYV" misc_feature 23..520 /gene="cldnd" /gene_synonym="cldn29a; ns:zf-a310; zf-a310; zgc:101004" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_...
Synonym: cldn29a; ns:zf-a310; zf-a310; zgc:101004
NM_180964.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin k (cldnk), transcript variant X1, mRNA. (1985 bp)
CDS 1110..1760 /gene="cldnk" /gene_synonym="zgc:91878" /codon_start=1 /product="claudin k isoform X1" /protein_id="XP_009298021.1" /db_xref="GeneID:445070" /db_xref="ZFIN:ZDB-GENE-040801-201" /translation="MATTGMQLLGLVLSIIGLVGGFLVCTLPMWRVTAFIGNNIVTAQITWEGLWMNCIWQSTGEIQCKGYDSLLALPSDMKAARGLTVLAILICSLSLTLGILGIKCTECVGLPSLKARLARVSGVLFVIAGFLILVPVCWTAHSIIRDFYDPYVAAPHKRELGPALYLGWGASALLLIGGSLLYAGSNPPGIPSSPTFSSDESSPRRAGGSSQVKGYV" misc_feature 1119..1652 /gene="cldnk" /gene_synonym="zgc:91878" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: zgc:91878
XM_009299746.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin 19 (cldn19), transcript variant X2, mRNA. (4847 bp)
gene="cldn19" /gene_synonym="zgc:112141" /codon_start=1 /product="claudin-19 isoform X2" /protein_id="XP_017213716.1" /db_xref="GeneID:550431" /db_xref="ZFIN:ZDB-GENE-050417-242" /translation="MANSGFQLLGYFLALGGWIGIISTTVLPQWKQSSYAGDAIIMAVGLYEGLWMSCASQSTGQVQCKIFDSLLSLDVNIQTCRALMVISVLMGFMGIIVSVVGMKCTKVGDNNPSTKSKIAISGGSLFLLSGVCTLVAVSWYAAQVSAHFFDPNTPTNAKYDFGTALFVGWAASVLMMLGGAFLCCSCINEDRRGQQFYRQSQPSTTREDELLSETSFPD" misc_feature 416..952 /gene="cldn19" /gene_synonym="zgc:112141" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: zgc:112141
XM_017358227.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin 19 (cldn19), transcript variant X1, mRNA. (4445 bp)
gene="cldn19" /gene_synonym="zgc:112141" /codon_start=1 /product="claudin-19 isoform X1" /protein_id="XP_017213715.1" /db_xref="GeneID:550431" /db_xref="ZFIN:ZDB-GENE-050417-242" /translation="MANSGFQLLGYFLALGGWIGIISTTVLPQWKQSSYAGDAIIMAVGLYEGLWMSCASQSTGQVQCKIFDSLLSLDVNIQTCRALMVISVLMGFMGIIVSVVGMKCTKVGDNNPSTKSKIAISGGSLFLLSGVCTLVAVSWYAAQVSAHFFDPNTPTNAKYDFGTALFVGWAASVLMMLGGAFLCCSCINEDRRGQQFYRQSQPSTTREANVKSSPAEKGEQYL" misc_feature 415..951 /gene="cldn19" /gene_synonym="zgc:112141" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: zgc:112141
XM_017358226.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin-1-like (LOC101883865), transcript variant X1, mRNA. (3664 bp)
samples with support for all annotated introns" /db_xref="GeneID:101883865" CDS 3016..3462 /gene="LOC101883865" /codon_start=1 /product="claudin-1-like" /protein_id="XP_021325275.1" /db_xref="GeneID:101883865" /translation="MHVFLYVCCVLVVVEIRMSRVFMIISIVLSSFAVLVAVSGLRCTKFLDDNETMKDRTAFFGGILSVCGGLFALGITSWFTYLIVDDFYQKDDDKDKYVIGKSLIGAFVASLLCLFGGVFLCACSVKSLRSNNKFSQHLVSKNPEKDYV" misc_feature <3061..3375 /gene="LOC101883865" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_021469600.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin 2 (cldn2), transcript variant X1, mRNA. (2072 bp)
gene_synonym="zgc:92260" /codon_start=1 /product="claudin-14 isoform X1" /protein_id="XP_005170329.1" /db_xref="GeneID:562525" /db_xref="ZFIN:ZDB-GENE-040912-26" /translation="MAILALELMGFFFGLIGMLGTLVATLLPYWATSAHVGPNIVTAVVSMKGLWMECVYQSTGAFQCETYNTLLGLTVDLQAARAMMVMSSIFSVMACAVSTVGMQCTVCMDGSSVKTKVAGVGGSMFLLAGLLSLIPVAWKTHEVVQTFYMPNMPASLKFEIGDCLYVGLASSLLSMLGGGLLSASCCDDIDGNRGSRRHYPYPERNALRGPSHSMTYQPAALHSTTNPNITNKTQTLNSHTSSGTHSIQAQDSRKMTRQNTAAGYDVTGYV" misc_feature 404..892 /gene="cldn2" /gene_synonym="zgc:92260" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD...
Synonym: zgc:92260
XM_005170272.4 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin 15-like b (cldn15lb), transcript variant X1, mRNA. (1456 bp)
gene_synonym="cldn10l1b; zgc:92349" /codon_start=1 /product="claudin 15-like b isoform X1" /protein_id="XP_017214719.1" /db_xref="GeneID:436719" /db_xref="ZFIN:ZDB-GENE-040718-145" /translation="MSTGVQLLGFLMCLGGWLLSFISLLNDSWRVSSFSDQLITSQWYYQNLWQTCAKASTGVTNCKEFESMLSLAGYIQACRALMIIALILGLLSVVLASMGLKCTKLGSTSEEAKGKISLTAGIMFILSGLCVIVAVSWYAARVVQEFNDPFYGGTKYELGAGLYLGWAAAALCILGGGTLCTSFKGSSPAQTRGPGYNYSAAQPQKIYRSAPSDNSITKAYV" misc_feature 57..578 /gene="cldn15lb" /gene_synonym="cldn10l1b; zgc:92349" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
Synonym: cldn10l1b; zgc:92349
XM_017359230.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin-4-like (LOC100147871), mRNA. (1294 bp)
by RNAseq alignments" /db_xref="GeneID:100147871" CDS 460..1095 /gene="LOC100147871" /codon_start=1 /product="claudin-4-like" /protein_id="XP_005161335.1" /db_xref="GeneID:100147871" /translation="MASQGIQILGIMLSMIGWLGTIIACGMPMWRVTAFVGANIVTAQIIWEGLWMSCVVQSTGQMQCKVYDSMLALSQDMQASRAMVIISIMVGIFGFLMAVVGGKCTNCLEDEAAKAKACIFSGVVLIIAGLLILIPICWSAHTLIRDFYNPLLTASQRRELGACLYIGWGSGGLLLLGGGLLCWNCPSNNTRPYIAAKYTHGRSMTPTINYV" misc_feature 472..963 /gene="LOC100147871" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_005161278.4 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin-3-like (LOC100333863), mRNA. (1339 bp)
by RNAseq alignments" /db_xref="GeneID:100333863" CDS 193..840 /gene="LOC100333863" /codon_start=1 /product="claudin-3-like" /protein_id="XP_005169738.1" /db_xref="GeneID:100333863" /translation="MSFGLELVGIILCVLGWLLAIVACAIPMWRVTAFIGSNIVTAQIIWDGLWMSCVVQSTGQMQCKVYDSMLALSQDLQAARALTVISILLTVLAVLVSIGGAKCTNCIEEESSKAKVMIFGGVLFILAGLMQLIPVSWSANSIIRDFYNPLLPDAQRREMGAGLYIGWAAAALLIMGGSLLCCSCPPQEKKYNPSRMPYPASRSTGGVGYDRRDYV" misc_feature 202..732 /gene="LOC100333863" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_005169681.4 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio putative claudin-24 (LOC110438642), mRNA. (1205 bp)
alignments" /db_xref="GeneID:110438642" CDS 293..955 /gene="LOC110438642" /codon_start=1 /product="putative claudin-24" /protein_id="XP_021327251.1" /db_xref="GeneID:110438642" /translation="MVLFTTKFVQRTSLFVSFGGLVTTFVTTFLPLWKTMNSDLNEMENWYEGLWHMCIYTEEVGIHCKAFDSFLALPPDTFAGRVLMCISIATGILGVAAAFFGLRGVEIGASRERMKRNLLILGGVFVVVSGVTTLAAVSFMAYVMVVKFWDDDRPEVMPGWEYGEAMFSAWFAGLLLVVGGSFLFVAVCMGDHEVKLQTEMIARCQEQRPRSLHYRKTEII" misc_feature 332..841 /gene="LOC110438642" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_021471576.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin-like protein ZF-A89 (LOC796314), mRNA. (1604 bp)
genomic feature by RNAseq alignments" /db_xref="GeneID:796314" CDS 519..1088 /gene="LOC796314" /codon_start=1 /product="claudin-like protein ZF-A89" /protein_id="XP_005161336.1" /db_xref="GeneID:796314" /translation="MRTRQFVAAFLALVGLCGTILICALPMWKVSAFVGANIVTAQVYWQGLWMNCVLQSTGHMQCMAYYSVLALTQDLQAARGLICASIGVSAIAFGMMVVGANCTRFYREDQLKKTNIGISAGALYIVGGVMCLVAVCWQTSIIVMNFYNPQVIAGTQGELGACIYIGWVAGFLLIIGGGLLLSTYSNRCC" misc_feature 531..1025 /gene="LOC796314" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_005161279.4 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio claudin 20 (cldn20), transcript variant X2, mRNA. (2972 bp)
all annotated introns" /db_xref="GeneID:101886267" CDS 355..1086 /gene="cldn20" /codon_start=1 /product="claudin-20" /protein_id="XP_021323159.1" /db_xref="GeneID:101886267" /translation="MASTGTQIFAFVLALLGILGATVATLLPNWKVSADVGSNIITAISQMQGLWMDCTWYSTGMFSCTLKYSVLALPAYLQTARTTMVLSCVLAALGLCLASLGLKCTRWGGGRRAKRHAAMAAGTCFLASGFLCLVPASWYTNEVIVSFLDANVPESNKFEPGGAVYVAFISSGFLFVGGSIFCLSCSGKRHGPQDLILLPPDKLLLLLDQLQHQYCSLSPLDNKTGYSLQDYV" misc_feature 364..897 /gene="cldn20" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_021467484.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio putative claudin-24 (LOC100002327), mRNA. (1211 bp)
alignments" /db_xref="GeneID:100002327" CDS 349..1014 /gene="LOC100002327" /codon_start=1 /product="putative claudin-24" /protein_id="XP_001342135.1" /db_xref="GeneID:100002327" /translation="MEPGSCALELLGVFFSLCACLCSLLSTMMTRWLTLSTELLPTESFELGLWMTCVVQELGVTECRPYDSLLGLPPDIRLARIMMCTSVAAGLSALVFAIPGINLVNSCKNRADSIEAKRTLKIFGGILSLSSGVLGIVPVSYVAHLTVLRFFDESVPSVVPRWEFGDALFLGWTAGCLQVVAGLLLITSCFFLQDKTRGLGESIHMDRVNGTRSPRNRTENV" misc_feature 367..903 /gene="LOC100002327" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN //...
XM_001342099.4 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

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Redirect URI : http://ggrna.dbcls.jp/dr/claudin
lang : en | div : | spe : dr | query_string : claudin | format : html | download : 

0.000 | 0.000 | search_start;
0.092 | 0.092 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Danio rerio (zebrafish)?to=0&format=json
0.147 | 0.054 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.152 | 0.006 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]