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2024-04-28 02:37:09, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

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Danio rerio argonaute RISC catalytic component 3b (ago3b), mRNA. (3062 bp)
c 2954-3062 BX005424.10 157442-157550 c FEATURES Location/Qualifiers source 1..3062 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="19" /map="19" gene 1..3062 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b" /db_xref="GeneID:568159" /db_xref="ZFIN:ZDB-GENE-060503-452" exon 1..498 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /inference="alignment:Splign:2.1.0" misc_feature 477..479 /gene="ago3b" /gene_synonym="ago3;...
Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
NM_001160028.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio argonaute RISC catalytic component 3a (ago3a), mRNA. (3683 bp)
misc_feature 906..1190 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1218..1370 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1371..1733 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the...
Synonym: eif2c1; eif2c3a; sb:eu275; sb:eu416
NM_001423197.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio argonaute RISC component 4 (ago4), mRNA. (2729 bp)
misc_feature 205..594 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 625..777 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 778..1140 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The...
Synonym: eif2c4; fd14f04; wu:fd14f04
NM_001252559.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio argonaute RISC catalytic component 3b (ago3b), transcript variant X1, mRNA. (8295 bp)
Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8295 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="19" gene 1..8295 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 16 ESTs, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including...
Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
XM_005159456.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio argonaute RISC catalytic component 3b (ago3b), transcript variant X2, mRNA. (2336 bp)
Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2336 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="19" gene 1..2336 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples...
Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
XM_009294054.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio argonaute RISC catalytic component 2 (ago2), mRNA. (2941 bp)
misc_feature 518..742 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 770..922 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 923..1285 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
NM_001302222.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio argonaute RISC catalytic component 2 (ago2), transcript variant X1, mRNA. (9864 bp)
misc_feature 681..905 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 933..1085 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1086..1448 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_009294368.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio protein argonaute-3 (LOC567622), transcript variant X1, mRNA. (3673 bp)
misc_feature 918..1202 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1230..1382 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1383..1745 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named...
Synonym: ago3a; eif2c1
XM_009292707.3 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio argonaute RISC component 1 (ago1), mRNA. (2986 bp)
misc_feature 335..2905 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1505..2782 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order...
Synonym: si:ch211-119n15.3
NM_001317223.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio protein argonaute-3 (LOC567622), transcript variant X2, mRNA. (2136 bp)
LOCUS XM_017351356 2136 bp mRNA linear VRT 15-JUN-2017 DEFINITION PREDICTED: Danio rerio protein argonaute-3 (LOC567622), transcript variant X2, mRNA. ACCESSION XM_017351356 VERSION XM_017351356.2 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence...
Synonym: ago3a; eif2c1
XM_017351356.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio argonaute RISC catalytic component 1 (ago1), transcript variant X1, mRNA. (5528 bp)
misc_feature 397..3006 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1606..2883 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order...
Synonym: si:ch211-119n15.3
XM_005158472.4 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio protein argonaute-3 (LOC567622), mRNA. (3075 bp)
misc_feature 443..727 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 755..907 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 908..1270 /gene="LOC567622" /gene_synonym="ago3a; eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named...
Synonym: ago3a; eif2c1
NM_001302232.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 9-1 (dre-mir-9-1), microRNA. (87 bp)
Cell Rep 20 (7), 1533-1542 (2017) PUBMED 28813666 REMARK GeneRIF: miR-9 modulation of neuronal VEGF-A controls brain angiogenesis in vivo. REFERENCE 4 (bases 1 to 87) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REMARK GeneRIF: miR-9, along with Argonaute proteins (Agos), is localized to the nucleus of quiescent neural stem cells, and manipulating their nuclear/cytoplasmic ratio...
Synonym: mir9-1
NR_029995.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio trinucleotide repeat containing adaptor 6A (tnrc6a), non-coding RNA. (449 bp)
product="trinucleotide repeat containing adaptor 6A" /pseudo /db_xref="GeneID:571871" /db_xref="ZFIN:ZDB-GENE-030131-2519" ORIGIN // REFERENCE 1 (bases 1 to 449) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 2 (bases 1 to 449) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-...
Synonym: wu:fc10d10
NR_023338.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio si:dkey-217f16.6 (si:dkey-217f16.6), transcript variant X2, mRNA. (4015 bp)
misc_feature 424..>732 /gene="si:dkey-217f16.6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature <1615..2079 /gene="si:dkey-217f16.6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 2089..2334 /gene="si:dkey-217f16.6" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:450164" ORIGIN //...
XM_021474823.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio si:dkey-217f16.6 (si:dkey-217f16.6), transcript variant X1, mRNA. (4102 bp)
misc_feature 424..>732 /gene="si:dkey-217f16.6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature <1615..2166 /gene="si:dkey-217f16.6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 2176..2421 /gene="si:dkey-217f16.6" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:450164" ORIGIN //...
XM_021474822.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio NOTCH regulated ankyrin repeat protein a (nrarpa), mRNA. (3193 bp)
angiogenicity evaluation of Pak1 inhibitor IPA-3 using zebrafish embryo model JOURNAL Cell Biol Toxicol 33 (1), 41-56 (2017) PUBMED 27581547 REFERENCE 5 (bases 1 to 3193) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 6 (bases 1 to 3193) AUTHORS Wright D, Ferjentsik Z, Chong SW, Qiu X, Yun-Jin J, Malapert P, Pourquie O, Van Hateren N, Wilson SA, Franco C, Gerhardt H, Dale...
Synonym: fc89b12; id:ibd2282; Nrarp-a; wu:fa14d10; wu:fc89b12; zgc:100826
NM_181495.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio si:dkey-46g23.1 (si:dkey-46g23.1), transcript variant X3, mRNA. (5821 bp)
misc_feature 2139..>2426 /gene="si:dkey-46g23.1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature <3330..3881 /gene="si:dkey-46g23.1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 3891..4136 /gene="si:dkey-46g23.1" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:450164" ORIGIN //...
XM_021474815.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio si:dkey-46g23.1 (si:dkey-46g23.1), transcript variant X2, mRNA. (5785 bp)
misc_feature 2190..>2477 /gene="si:dkey-46g23.1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature <3381..3845 /gene="si:dkey-46g23.1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 3855..4100 /gene="si:dkey-46g23.1" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:450164" ORIGIN //...
XM_001332799.8 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio si:dkey-46g23.1 (si:dkey-46g23.1), transcript variant X1, mRNA. (5872 bp)
misc_feature 2190..>2477 /gene="si:dkey-46g23.1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature <3381..3932 /gene="si:dkey-46g23.1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 3942..4187 /gene="si:dkey-46g23.1" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:450164" ORIGIN //...
XM_005165464.4 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-4 (mir430c-4), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 5 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: dre-mir-430c-4
NR_034213.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-5 (mir430c-5), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 5 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: dre-mir-430c-5
NR_045239.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 9-6 (mir9-6), microRNA. (88 bp)
Sequential and additive expression of miR-9 precursors control timing of neurogenesis JOURNAL Development 149 (19) (2022) PUBMED 36189829 REFERENCE 2 (bases 1 to 88) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 3 (bases 1 to 88) AUTHORS King BL and Yin VP. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration...
Synonym: mirn9-6
NR_045222.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 9-4 (mir9-4), microRNA. (87 bp)
and Her6 levels are optimized by miR-9, allowing the decoding of the Her6 oscillator JOURNAL EMBO J 39 (12), e103558 (2020) PUBMED 32395844 REFERENCE 4 (bases 1 to 87) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 5 (bases 1 to 87) AUTHORS King BL and Yin VP. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration...
Synonym: dre-mir-9-4
NR_029996.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 9-3 (mir9-3), microRNA. (101 bp)
atlas of the developing zebrafish hindbrain JOURNAL Development 147 (6) (2020) PUBMED 32094115 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 101) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 4 (bases 1 to 101) AUTHORS King BL and Yin VP. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration JOURNAL...
Synonym: dre-mir-9-3
NR_029997.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 9-7 (mir9-7), microRNA. (84 bp)
Sequential and additive expression of miR-9 precursors control timing of neurogenesis JOURNAL Development 149 (19) (2022) PUBMED 36189829 REFERENCE 2 (bases 1 to 84) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 3 (bases 1 to 84) AUTHORS King BL and Yin VP. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration...
Synonym: dre-mir-9-7
NR_030000.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 9-5 (mir9-5), microRNA. (87 bp)
functional mutation associated to retinal vasculature defects in human JOURNAL Nucleic Acids Res 46 (7), 3517-3531 (2018) PUBMED 29518216 REFERENCE 5 (bases 1 to 87) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 6 (bases 1 to 87) AUTHORS Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engstrom PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G...
Synonym: dre-mir-9-5
NR_029998.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X3, mRNA. (11624 bp)
misc_feature 3249..3587 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3594..3707 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3888..4484 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4488..5243 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5232..5495 /gene="tnrc6c2" /...
XM_021477077.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X3, mRNA. (11625 bp)
misc_feature 3249..3587 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3594..3707 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3888..4484 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4488..5243 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5232..5495 /gene="tnrc6c2" /...
XM_021474088.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-9 (dre-mir-430c-9), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 5 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-9
NR_034218.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X2, mRNA. (11285 bp)
misc_feature 2799..3137 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3144..3257 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3438..4034 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4038..4904 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4893..5156 /gene="tnrc6c2" /...
XM_021477076.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X1, mRNA. (11736 bp)
misc_feature 3250..3588 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3595..3708 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3889..4485 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4489..5355 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5344..5607 /gene="tnrc6c2" /...
XM_021477075.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X2, mRNA. (11286 bp)
misc_feature 2799..3137 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3144..3257 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3438..4034 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4038..4904 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4893..5156 /gene="tnrc6c2" /...
XM_021474087.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X2, mRNA. (11260 bp)
misc_feature 2764..3123 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3130..3243 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3424..4020 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4024..4890 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4879..5142 /gene="tnrc6c2" /...
XM_021471760.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X1, mRNA. (11737 bp)
misc_feature 3250..3588 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3595..3708 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3889..4485 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4489..5355 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5344..5607 /gene="tnrc6c2" /...
XM_021474086.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X3, mRNA. (11623 bp)
misc_feature 3238..3597 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3604..3717 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3898..4494 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4498..5253 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5242..5505 /gene="tnrc6c2" /...
XM_017356616.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-3 (mir430c-3), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: dre-mir-430c-3
NR_045238.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6C2 (tnrc6c2), transcript variant X1, mRNA. (11734 bp)
misc_feature 3238..3597 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3604..3717 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3898..4494 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4498..5364 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5353..5616 /gene="tnrc6c2" /...
XM_009302365.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6b (tnrc6b), transcript variant X1, mRNA. (7659 bp)
misc_feature 3322..>3555 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4465..5283 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5287..5535 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_021480466.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio trinucleotide repeat containing 6b (tnrc6b), transcript variant X2, mRNA. (7640 bp)
misc_feature 3304..>3537 /gene="tnrc6b" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4447..5265 /gene="tnrc6b" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5269..5517 /gene="tnrc6b" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
XM_021474236.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-8 (dre-mir-430c-8), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-8
NR_045242.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-7 (dre-mir-430c-7), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-7
NR_045241.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-17 (dre-mir-430c-17), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-17
NR_039273.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-2 (mir430c-2), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: dre-mir-430c-2
NR_034211.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-6 (mir430c-6), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: dre-mir-430c-6
NR_045240.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-16 (dre-mir-430c-16), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-16
NR_034225.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-14 (dre-mir-430c-14), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-14
NR_034223.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-11 (dre-mir-430c-11), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-11
NR_034220.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-15 (dre-mir-430c-15), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-15
NR_034224.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio microRNA 430c-13 (dre-mir-430c-13), microRNA. (73 bp)
PUBMED 24130773 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 73) AUTHORS Cifuentes D, Xue H, Taylor DW, Patnode H, Mishima Y, Cheloufi S, Ma E, Mane S, Hannon GJ, Lawson ND, Wolfe SA and Giraldez AJ. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 6 (bases 1 to 73) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue),...
Synonym: mir430c-13
NR_034222.2 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/dr/Argonaute
lang : en | div : | spe : dr | query_string : Argonaute | format : html | download : 

0.000 | 0.000 | search_start;
0.079 | 0.079 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Danio rerio (zebrafish)?to=0&format=json
0.144 | 0.064 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.149 | 0.005 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]