2024-11-01 08:43:33, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NR_029995 87 bp RNA linear VRT 02-DEC-2023 DEFINITION Danio rerio microRNA 9-1 (dre-mir-9-1), microRNA. ACCESSION NR_029995 VERSION NR_029995.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 87) AUTHORS Soto X, Burton J, Manning CS, Minchington T, Lea R, Lee J, Kursawe J, Rattray M and Papalopulu N. TITLE Sequential and additive expression of miR-9 precursors control timing of neurogenesis JOURNAL Development 149 (19) (2022) PUBMED 36189829 REFERENCE 2 (bases 1 to 87) AUTHORS Soto X, Biga V, Kursawe J, Lea R, Doostdar P, Thomas R and Papalopulu N. TITLE Dynamic properties of noise and Her6 levels are optimized by miR-9, allowing the decoding of the Her6 oscillator JOURNAL EMBO J 39 (12), e103558 (2020) PUBMED 32395844 REMARK GeneRIF: Dynamic properties of noise and Her6 levels are optimized by miR-9, allowing the decoding of the Her6 oscillator. REFERENCE 3 (bases 1 to 87) AUTHORS Madelaine R, Sloan SA, Huber N, Notwell JH, Leung LC, Skariah G, Halluin C, Pasca SP, Bejerano G, Krasnow MA, Barres BA and Mourrain P. TITLE MicroRNA-9 Couples Brain Neurogenesis and Angiogenesis JOURNAL Cell Rep 20 (7), 1533-1542 (2017) PUBMED 28813666 REMARK GeneRIF: miR-9 modulation of neuronal VEGF-A controls brain angiogenesis in vivo. REFERENCE 4 (bases 1 to 87) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REMARK GeneRIF: miR-9, along with Argonaute proteins (Agos), is localized to the nucleus of quiescent neural stem cells, and manipulating their nuclear/cytoplasmic ratio impacts quiescence. REFERENCE 5 (bases 1 to 87) AUTHORS King BL and Yin VP. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration JOURNAL PLoS One 11 (6), e0157106 (2016) PUBMED 27355827 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 87) AUTHORS Kikuta H, Laplante M, Navratilova P, Komisarczuk AZ, Engstrom PG, Fredman D, Akalin A, Caccamo M, Sealy I, Howe K, Ghislain J, Pezeron G, Mourrain P, Ellingsen S, Oates AC, Thisse C, Thisse B, Foucher I, Adolf B, Geling A, Lenhard B and Becker TS. TITLE Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates JOURNAL Genome Res 17 (5), 545-555 (2007) PUBMED 17387144 REFERENCE 7 (bases 1 to 87) AUTHORS Kapsimali M, Kloosterman WP, de Bruijn E, Rosa F, Plasterk RH and Wilson SW. TITLE MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system JOURNAL Genome Biol 8 (8), R173 (2007) PUBMED 17711588 REFERENCE 8 (bases 1 to 87) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 REFERENCE 9 (bases 1 to 87) AUTHORS Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S and Plasterk RH. TITLE MicroRNA expression in zebrafish embryonic development JOURNAL Science 309 (5732), 310-311 (2005) PUBMED 15919954 REFERENCE 10 (bases 1 to 87) AUTHORS Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M and Tuschl T. TITLE The developmental miRNA profiles of zebrafish as determined by small RNA cloning JOURNAL Genes Dev 19 (11), 1288-1293 (2005) PUBMED 15937218 COMMENT PROVISIONAL REFSEQ: This record is based on preliminary annotation provided by NCBI staff in collaboration with miRBase. The reference sequence was derived from CR848047.7. Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript is intronless :: LM609094.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-87 CR848047.7 7009-7095 FEATURES Location/Qualifiers source 1..87 /organism="Danio rerio" /mol_type="transcribed RNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="16" /map="16" gene 1..87 /gene="dre-mir-9-1" /gene_synonym="mir9-1" /note="microRNA 9-1" /db_xref="GeneID:100033553" /db_xref="miRBase:MI0001880" /db_xref="ZFIN:ZDB-MIRNAG-070720-1" precursor_RNA 1..87 /gene="dre-mir-9-1" /gene_synonym="mir9-1" /product="microRNA 9-1" /db_xref="GeneID:100033553" /db_xref="miRBase:MI0001880" /db_xref="ZFIN:ZDB-MIRNAG-070720-1" exon 1..87 /gene="dre-mir-9-1" /gene_synonym="mir9-1" /inference="alignment:Splign:2.1.0" ncRNA 15..37 /ncRNA_class="miRNA" /gene="dre-mir-9-1" /gene_synonym="mir9-1" /product="dre-miR-9-5p" /db_xref="miRBase:MIMAT0001769" /db_xref="GeneID:100033553" /db_xref="miRBase:MI0001880" /db_xref="ZFIN:ZDB-MIRNAG-070720-1" ncRNA 55..75 /ncRNA_class="miRNA" /gene="dre-mir-9-1" /gene_synonym="mir9-1" /product="dre-miR-9-3p" /db_xref="miRBase:MIMAT0003156" /db_xref="GeneID:100033553" /db_xref="miRBase:MI0001880" /db_xref="ZFIN:ZDB-MIRNAG-070720-1" ORIGIN
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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