2024-05-10 22:59:29, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_030000 84 bp RNA linear VRT 02-DEC-2023 DEFINITION Danio rerio microRNA 9-7 (mir9-7), microRNA. ACCESSION NR_030000 NR_039107 VERSION NR_030000.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 84) AUTHORS Soto X, Burton J, Manning CS, Minchington T, Lea R, Lee J, Kursawe J, Rattray M and Papalopulu N. TITLE Sequential and additive expression of miR-9 precursors control timing of neurogenesis JOURNAL Development 149 (19) (2022) PUBMED 36189829 REFERENCE 2 (bases 1 to 84) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 3 (bases 1 to 84) AUTHORS King BL and Yin VP. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration JOURNAL PLoS One 11 (6), e0157106 (2016) PUBMED 27355827 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 84) AUTHORS Nepal C, Coolen M, Hadzhiev Y, Cussigh D, Mydel P, Steen VM, Carninci P, Andersen JB, Bally-Cuif L, Muller F and Lenhard B. TITLE Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs JOURNAL Nucleic Acids Res 44 (7), 3070-3081 (2016) PUBMED 26673698 REFERENCE 5 (bases 1 to 84) AUTHORS Desvignes T, Beam MJ, Batzel P, Sydes J and Postlethwait JH. TITLE Expanding the annotation of zebrafish microRNAs based on small RNA sequencing JOURNAL Gene 546 (2), 386-389 (2014) PUBMED 24835514 REFERENCE 6 (bases 1 to 84) AUTHORS Delaloy,C. and Gao,F.B. TITLE microRNA-9 multitasking near organizing centers JOURNAL Nat Neurosci 11 (6), 625-626 (2008) PUBMED 18506136 REMARK GeneRIF: microRNA-9 regulates multiple processes near the organizing centers during early brain development in zebrafish. REFERENCE 7 (bases 1 to 84) AUTHORS Leucht C, Stigloher C, Wizenmann A, Klafke R, Folchert A and Bally-Cuif L. TITLE MicroRNA-9 directs late organizer activity of the midbrain-hindbrain boundary JOURNAL Nat Neurosci 11 (6), 641-648 (2008) PUBMED 18454145 REMARK GeneRIF: This study suggest microRNA-9 fine-tunes late midbrain-hindbrain boundary coherence via its co-regulation of patterning.activities and neurogenesis. REFERENCE 8 (bases 1 to 84) AUTHORS Kapsimali M, Kloosterman WP, de Bruijn E, Rosa F, Plasterk RH and Wilson SW. TITLE MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system JOURNAL Genome Biol 8 (8), R173 (2007) PUBMED 17711588 REFERENCE 9 (bases 1 to 84) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 REFERENCE 10 (bases 1 to 84) AUTHORS Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M and Tuschl T. TITLE The developmental miRNA profiles of zebrafish as determined by small RNA cloning JOURNAL Genes Dev 19 (11), 1288-1293 (2005) PUBMED 15937218 COMMENT PROVISIONAL REFSEQ: This record is based on preliminary annotation provided by NCBI staff in collaboration with miRBase. The reference sequence was derived from CABZ01030471.1. On Sep 3, 2011 this sequence version replaced NR_039107.1. Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript is intronless :: LM609100.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-84 CABZ01030471.1 6622-6705 c FEATURES Location/Qualifiers source 1..84 /organism="Danio rerio" /mol_type="transcribed RNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="2" /map="2" gene 1..84 /gene="mir9-7" /gene_synonym="dre-mir-9-7" /note="microRNA 9-7" /db_xref="GeneID:100033559" /db_xref="miRBase:MI0001886" /db_xref="ZFIN:ZDB-MIRNAG-081013-5" precursor_RNA 1..84 /gene="mir9-7" /gene_synonym="dre-mir-9-7" /product="microRNA 9-7" /db_xref="GeneID:100033559" /db_xref="miRBase:MI0001886" /db_xref="ZFIN:ZDB-MIRNAG-081013-5" exon 1..84 /gene="mir9-7" /gene_synonym="dre-mir-9-7" /inference="alignment:Splign:2.1.0" ncRNA 14..36 /ncRNA_class="miRNA" /gene="mir9-7" /gene_synonym="dre-mir-9-7" /product="dre-miR-9-5p" /db_xref="miRBase:MIMAT0001769" /db_xref="GeneID:100033559" /db_xref="miRBase:MI0001886" /db_xref="ZFIN:ZDB-MIRNAG-081013-5" ncRNA 51..72 /ncRNA_class="miRNA" /gene="mir9-7" /gene_synonym="dre-mir-9-7" /product="dre-miR-9-7-3p" /db_xref="miRBase:MIMAT0031933" /db_xref="GeneID:100033559" /db_xref="miRBase:MI0001886" /db_xref="ZFIN:ZDB-MIRNAG-081013-5" ORIGIN
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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