GGRNA | Results

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Danio rerio argonaute RISC catalytic component 3a (ago3a), mRNA. (3683 bp)

misc_feature 906..1190 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1218..1370 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1371..1733 /gene="ago3a" /gene_synonym="eif2c1; eif2c3a; sb:eu275; sb:eu416" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the...

Synonym: eif2c1; eif2c3a; sb:eu275; sb:eu416
NM_001423197.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3b (ago3b), transcript variant X1, mRNA. (8017 bp)

Fibroblasts and whole tissue" /dev_stage="adult" /ecotype="United States" /geo_loc_name="USA" /collection_date="2022-07-19" /collected_by="National Human Genome Research Institute" /genotype="Double heterozygous" gene 1..8017 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 7166 long SRA reads, 12 Proteins" /db_xref="GeneID:568159" /db_xref="ZFIN:ZDB-GENE-060503-452"...

Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
XM_005159456.4 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio argonaute RISC catalytic component 3b (ago3b), mRNA. (3062 bp)

JBMGRA0119.1 11782643-11782751 FEATURES Location/Qualifiers source 1..3062 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="19" /map="19" gene 1..3062 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b" /db_xref="GeneID:568159" /db_xref="ZFIN:ZDB-GENE-060503-452" exon 1..498 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /inference="alignment:Splign:2.1.0" misc_feature 477..479 /gene="ago3b" /gene_synonym="ago3;...

Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
NM_001160028.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3b (ago3b), transcript variant X2, mRNA. (1926 bp)

Fibroblasts and whole tissue" /dev_stage="adult" /ecotype="United States" /geo_loc_name="USA" /collection_date="2022-07-19" /collected_by="National Human Genome Research Institute" /genotype="Double heterozygous" gene 1..1926 /gene="ago3b" /gene_synonym="ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3" /note="argonaute RISC catalytic component 3b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 72 long SRA reads, 4 Proteins" /db_xref="GeneID:568159" /db_xref="ZFIN:ZDB-GENE-060503-452" misc_feature...

Synonym: ago3; Argonaute3; eif2c3; eif2c3b; sb:eu332; si:dkey-3n22.3
XM_073930997.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 2 (ago2), transcript variant X1, mRNA. (9676 bp)

misc_feature 494..718 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 746..898 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 899..1261 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_009294368.5 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3a (ago3a), transcript variant X3, mRNA. (5450 bp)

misc_feature 871..1155 /gene="ago3a" /gene_synonym="eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 1183..1335 /gene="ago3a" /gene_synonym="eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1336..1698 /gene="ago3a" /gene_synonym="eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut...

Synonym: eif2c1
XM_009292707.5 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3a (ago3a), transcript variant X2, mRNA. (5477 bp)

Synonym: eif2c1
XM_068213996.2 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC catalytic component 3a (ago3a), transcript variant X1, mRNA. (5498 bp)

Synonym: eif2c1
XM_068213994.2 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio argonaute RISC component 4 (ago4), mRNA. (2729 bp)

misc_feature 205..594 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 625..777 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 778..1140 /gene="ago4" /gene_synonym="eif2c4; fd14f04; wu:fd14f04" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The...

Synonym: eif2c4; fd14f04; wu:fd14f04
NM_001252559.2 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC component 1 (ago1), transcript variant X2, misc_RNA. (5788 bp)

LOCUS XR_012391509 5788 bp RNA linear VRT 12-MAY-2025 DEFINITION PREDICTED: Danio rerio argonaute RISC component 1 (ago1), transcript variant X2, misc_RNA. ACCESSION XR_012391509 VERSION XR_012391509.1 DBLINK BioProject: PRJNA1248012 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence...

Synonym: si:ch211-119n15.3
XR_012391509.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC component 1 (ago1), transcript variant X3, misc_RNA. (5749 bp)

LOCUS XR_012391510 5749 bp RNA linear VRT 12-MAY-2025 DEFINITION PREDICTED: Danio rerio argonaute RISC component 1 (ago1), transcript variant X3, misc_RNA. ACCESSION XR_012391510 VERSION XR_012391510.1 DBLINK BioProject: PRJNA1248012 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence...

Synonym: si:ch211-119n15.3
XR_012391510.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio argonaute RISC component 1 (ago1), transcript variant X1, mRNA. (6030 bp)

misc_feature 352..2955 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1555..2832 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order...

Synonym: si:ch211-119n15.3
XM_005158472.6 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio argonaute RISC catalytic component 2 (ago2), mRNA. (2941 bp)

misc_feature 518..742 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 770..922 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 923..1285 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

NM_001302222.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio argonaute RISC component 1 (ago1), mRNA. (2986 bp)

misc_feature 341..2905 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1505..2782 /gene="ago1" /gene_synonym="si:ch211-119n15.3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order...

Synonym: si:ch211-119n15.3
NM_001317223.2 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio trinucleotide repeat containing adaptor 6A (tnrc6a), non-coding RNA. (449 bp)

product="trinucleotide repeat containing adaptor 6A" /pseudo /db_xref="GeneID:571871" /db_xref="ZFIN:ZDB-GENE-030131-2519" ORIGIN // REFERENCE 1 (bases 1 to 449) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 2 (bases 1 to 449) AUTHORS Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-...

Synonym: wu:fc10d10
NR_023338.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 9-1 (dre-mir-9-1), microRNA. (87 bp)

Rep 20 (7), 1533-1542 (2017) PUBMED 28813666 REMARK GeneRIF: miR-9 modulation of neuronal VEGF-A controls brain angiogenesis in vivo. REFERENCE 4 (bases 1 to 87) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REMARK GeneRIF: miR-9, along with Argonaute proteins (Agos), is localized to the nucleus of quiescent neural stem cells, and manipulating their nuclear/cytoplasmic ratio...

Synonym: mir9-1
NR_029995.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio trinucleotide repeat containing adaptor 6Bb.1 (tnrc6bb.1), transcript variant 5, mRNA. (8517 bp)

misc_feature 2164..>2451 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature <3352..3816 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 3826..4071 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" exon 416..2197 /gene="tnrc6bb...

Synonym: si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2
NM_001442672.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio trinucleotide repeat containing adaptor 6Bb.1 (tnrc6bb.1), transcript variant 3, mRNA. (8539 bp)

misc_feature 2186..>2473 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature <3374..3838 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 3848..4093 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" exon 140..161 /gene="tnrc6bb...

Synonym: si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2
NM_001442670.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio trinucleotide repeat containing adaptor 6Bb.1 (tnrc6bb.1), transcript variant 4, mRNA. (8751 bp)

misc_feature 2398..>2685 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature <3586..4050 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 4060..4305 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" exon 352..373 /gene="tnrc6bb...

Synonym: si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2
NM_001442671.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio trinucleotide repeat containing adaptor 6Bb.1 (tnrc6bb.1), transcript variant 1, mRNA. (8626 bp)

misc_feature 2186..>2473 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature <3374..3925 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 3935..4180 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" exon 140..161 /gene="tnrc6bb...

Synonym: si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2
NM_001442668.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio trinucleotide repeat containing adaptor 6Bb.1 (tnrc6bb.1), transcript variant 2, mRNA. (8838 bp)

misc_feature 2398..>2685 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature <3586..4137 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 4147..4392 /gene="tnrc6bb.1" /gene_synonym="si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" exon 352..373 /gene="tnrc6bb...

Synonym: si:dkey-217f16.6; si:dkey-46g23.1; tnrc6bb.2
NM_001442669.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6Bb.1 (tnrc6bb.1), transcript variant X5, mRNA. (8103 bp)

misc_feature 2164..>2451 /gene="tnrc6bb.1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature <3352..3903 /gene="tnrc6bb.1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 3913..4158 /gene="tnrc6bb.1" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" polyA_site 8103 /gene="tnrc6bb.1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

XM_073943809.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C2 (tnrc6c2), transcript variant X4, mRNA. (11710 bp)

misc_feature 3341..3673 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3680..3793 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3974..4570 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4574..5329 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5318..5581 /gene="tnrc6c2" /...

XM_073954074.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C2 (tnrc6c2), transcript variant X2, mRNA. (11821 bp)

misc_feature 3341..3673 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3680..3793 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3974..4570 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4574..5440 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5429..5692 /gene="tnrc6c2" /...

XM_073954073.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C2 (tnrc6c2), transcript variant X3, mRNA. (11603 bp)

misc_feature 3234..3566 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3573..3686 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3867..4463 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4467..5222 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5211..5474 /gene="tnrc6c2" /...

XM_021474088.3 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C2 (tnrc6c2), transcript variant X1, mRNA. (11714 bp)

misc_feature 3234..3566 /gene="tnrc6c2" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3573..3686 /gene="tnrc6c2" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3867..4463 /gene="tnrc6c2" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4467..5333 /gene="tnrc6c2" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5322..5585 /gene="tnrc6c2" /...

XM_021474086.3 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X12, mRNA. (9063 bp)

misc_feature 2525..2839 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 2846..2959 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3089..3754 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 3788..4528 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 4580..4822 /gene="tnrc6c1" /...

XM_073944714.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X11, mRNA. (9066 bp)

misc_feature 2525..2839 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 2846..2959 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3089..3754 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 3788..4537 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 4583..4825 /gene="tnrc6c1" /...

XM_073944713.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X9, mRNA. (9721 bp)

misc_feature 3180..3494 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3501..3614 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3744..4409 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4443..5192 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5238..5480 /gene="tnrc6c1" /...

XM_073944711.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X10, mRNA. (9718 bp)

misc_feature 3180..3494 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3501..3614 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3744..4409 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4443..5183 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5235..5477 /gene="tnrc6c1" /...

XM_073944712.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X8, mRNA. (9165 bp)

misc_feature 2525..2839 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 2846..2959 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3089..3754 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 3788..4630 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 4682..4924 /gene="tnrc6c1" /...

XM_073944710.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X6, mRNA. (9820 bp)

misc_feature 3180..3494 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3501..3614 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3744..4409 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4443..5285 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5337..5579 /gene="tnrc6c1" /...

XM_073944709.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6Ba (tnrc6ba), mRNA. (7882 bp)

misc_feature 3579..>3791 /gene="tnrc6ba" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 4701..5519 /gene="tnrc6ba" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5523..5771 /gene="tnrc6ba" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" polyA_site 7882 /gene="tnrc6ba" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

XM_068224758.2 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X7, mRNA. (9168 bp)

misc_feature 2525..2839 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 2846..2959 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3089..3754 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 3788..4639 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 4685..4927 /gene="tnrc6c1" /...

XM_009299600.5 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X5, mRNA. (9823 bp)

misc_feature 3180..3494 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3501..3614 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 3744..4409 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4443..5294 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5340..5582 /gene="tnrc6c1" /...

XM_009299599.5 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X4, mRNA. (10036 bp)

misc_feature 3498..3812 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3819..3932 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 4062..4727 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4761..5501 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5553..5795 /gene="tnrc6c1" /...

XM_005164094.6 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X3, mRNA. (10039 bp)

misc_feature 3498..3812 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3819..3932 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 4062..4727 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4761..5510 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5556..5798 /gene="tnrc6c1" /...

XM_009299598.5 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio piwi-like RNA-mediated gene silencing 2 (piwil2), transcript variant X1, mRNA. (3438 bp)

misc_feature 1326..1469 /gene="piwil2" /gene_synonym="sb:eu354; si:dkey-88f5.1; zili" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1473..1886 /gene="piwil2" /gene_synonym="sb:eu354; si:dkey-88f5.1; zili" /note="This domain is named PAZ after the proteins Piwi Argonaut and Zwille; Region: PAZ; smart00949" /db_xref="CDD:198017" misc_feature order(1602..1604,1641..1643,1665..1667,1677..1679, 1731..1733,1782..1784,1788..1790) /gene="piwil2" /gene_synonym="sb:eu354; si:dkey-88f5.1; zili" /note="nucleic acid-binding interface [nucleotide binding];...

Synonym: sb:eu354; si:dkey-88f5.1; zili
XM_073951019.1 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X2, mRNA. (10138 bp)

misc_feature 3498..3812 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3819..3932 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 4062..4727 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4761..5603 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5655..5897 /gene="tnrc6c1" /...

XM_005164093.6 - Danio rerio (zebrafish) - NCBI - UCSC

PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C1 (tnrc6c1), transcript variant X1, mRNA. (10141 bp)

misc_feature 3498..3812 /gene="tnrc6c1" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:463088" misc_feature 3819..3932 /gene="tnrc6c1" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 4062..4727 /gene="tnrc6c1" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4761..5612 /gene="tnrc6c1" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:465195" misc_feature 5658..5900 /gene="tnrc6c1" /...

XM_009299597.5 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 9-6 (mir9-6), microRNA. (88 bp)

and additive expression of miR-9 precursors control timing of neurogenesis JOURNAL Development 149 (19) (2022) PUBMED 36189829 REFERENCE 2 (bases 1 to 88) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 3 (bases 1 to 88) AUTHORS King,B.L. and Yin,V.P. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration JOURNAL...

Synonym: mirn9-6
NR_045222.2 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 9-4 (mir9-4), microRNA. (87 bp)

Her6 levels are optimized by miR-9, allowing the decoding of the Her6 oscillator JOURNAL EMBO J 39 (12), e103558 (2020) PUBMED 32395844 REFERENCE 4 (bases 1 to 87) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 5 (bases 1 to 87) AUTHORS King,B.L. and Yin,V.P. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration...

Synonym: dre-mir-9-4
NR_029996.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 9-3 (mir9-3), microRNA. (101 bp)

atlas of the developing zebrafish hindbrain JOURNAL Development 147 (6) (2020) PUBMED 32094115 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 101) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 4 (bases 1 to 101) AUTHORS King,B.L. and Yin,V.P. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration...

Synonym: dre-mir-9-3
NR_029997.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 430c-4 (mir430c-4), microRNA. (73 bp)

REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 73) AUTHORS Cifuentes,D., Xue,H., Taylor,D.W., Patnode,H., Mishima,Y., Cheloufi,S., Ma,E., Mane,S., Hannon,G.J., Lawson,N.D., Wolfe,S.A. and Giraldez,A.J. TITLE A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity JOURNAL Science 328 (5986), 1694-1698 (2010) PUBMED 20448148 REFERENCE 7 (bases 1 to 73) AUTHORS Griffiths-Jones,S., Grocock,R.J., van Dongen,S., Bateman,A. and Enright,A.J. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34...

Synonym: dre-mir-430c-4
NR_034213.2 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 430c-5 (mir430c-5), microRNA. (73 bp)

Synonym: dre-mir-430c-5
NR_045239.2 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 430c-9 (dre-mir-430c-9), microRNA. (73 bp)

Synonym: mir430c-9
NR_034218.2 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 9-7 (mir9-7), microRNA. (84 bp)

and additive expression of miR-9 precursors control timing of neurogenesis JOURNAL Development 149 (19) (2022) PUBMED 36189829 REFERENCE 2 (bases 1 to 84) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 3 (bases 1 to 84) AUTHORS King,B.L. and Yin,V.P. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration JOURNAL...

Synonym: dre-mir-9-7
NR_030000.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio NOTCH regulated ankyrin repeat protein a (nrarpa), mRNA. (3193 bp)

evaluation of Pak1 inhibitor IPA-3 using zebrafish embryo model JOURNAL Cell Biol Toxicol 33 (1), 41-56 (2017) PUBMED 27581547 REFERENCE 5 (bases 1 to 3193) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 6 (bases 1 to 3193) AUTHORS Wright,D., Ferjentsik,Z., Chong,S.W., Qiu,X., Yun-Jin,J., Malapert,P., Pourquie,O., Van Hateren,N., Wilson,S.A., Franco,C., Gerhardt,H.,...

Synonym: fc89b12; id:ibd2282; Nrarp-a; wu:fa14d10; wu:fc89b12; zgc:100826
NM_181495.3 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 9-2 (mir9-2), microRNA. (136 bp)

defects and to a specific downregulation of microRNA-9, rather than MEF2C as predicted by the original genome-wide association REFERENCE 2 (bases 1 to 136) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 3 (bases 1 to 136) AUTHORS King,B.L. and Yin,V.P. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration...

Synonym: mirn9-2
NR_045221.1 - Danio rerio (zebrafish) - NCBI - UCSC

Danio rerio microRNA 9-5 (mir9-5), microRNA. (87 bp)

mutation associated to retinal vasculature defects in human JOURNAL Nucleic Acids Res 46 (7), 3517-3531 (2018) PUBMED 29518216 REFERENCE 5 (bases 1 to 87) AUTHORS Katz,S., Cussigh,D., Urban,N., Blomfield,I., Guillemot,F., Bally-Cuif,L. and Coolen,M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 6 (bases 1 to 87) AUTHORS Kikuta,H., Laplante,M., Navratilova,P., Komisarczuk,A.Z., Engstrom,P.G., Fredman,D., Akalin,A., Caccamo,M., Sealy,I., Howe,K., Ghislain,J.,...

Synonym: dre-mir-9-5
NR_029998.1 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.082 | 0.082 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Danio rerio (zebrafish)?to=0&format=json
0.179 | 0.097 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.184 | 0.005 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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