2024-05-10 13:04:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_029996 87 bp RNA linear VRT 09-DEC-2023 DEFINITION Danio rerio microRNA 9-4 (mir9-4), microRNA. ACCESSION NR_029996 VERSION NR_029996.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 87) AUTHORS Soto X, Burton J, Manning CS, Minchington T, Lea R, Lee J, Kursawe J, Rattray M and Papalopulu N. TITLE Sequential and additive expression of miR-9 precursors control timing of neurogenesis JOURNAL Development 149 (19) (2022) PUBMED 36189829 REFERENCE 2 (bases 1 to 87) AUTHORS Zhang X, Yang F, Liu F, Tian Q, Hu M, Li P and Zeng Y. TITLE Conservation of Differential Animal MicroRNA Processing by Drosha and Dicer JOURNAL Front Mol Biosci 8, 730006 (2022) PUBMED 35047552 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 87) AUTHORS Soto X, Biga V, Kursawe J, Lea R, Doostdar P, Thomas R and Papalopulu N. TITLE Dynamic properties of noise and Her6 levels are optimized by miR-9, allowing the decoding of the Her6 oscillator JOURNAL EMBO J 39 (12), e103558 (2020) PUBMED 32395844 REFERENCE 4 (bases 1 to 87) AUTHORS Katz S, Cussigh D, Urban N, Blomfield I, Guillemot F, Bally-Cuif L and Coolen M. TITLE A Nuclear Role for miR-9 and Argonaute Proteins in Balancing Quiescent and Activated Neural Stem Cell States JOURNAL Cell Rep 17 (5), 1383-1398 (2016) PUBMED 27783951 REFERENCE 5 (bases 1 to 87) AUTHORS King BL and Yin VP. TITLE A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration JOURNAL PLoS One 11 (6), e0157106 (2016) PUBMED 27355827 REMARK Publication Status: Online-Only REFERENCE 6 (bases 1 to 87) AUTHORS Pappalardo-Carter DL, Balaraman S, Sathyan P, Carter ES, Chen WJ and Miranda RC. TITLE Suppression and epigenetic regulation of MiR-9 contributes to ethanol teratology: evidence from zebrafish and murine fetal neural stem cell models JOURNAL Alcohol Clin Exp Res 37 (10), 1657-1667 (2013) PUBMED 23800254 REFERENCE 7 (bases 1 to 87) AUTHORS Leucht C, Stigloher C, Wizenmann A, Klafke R, Folchert A and Bally-Cuif L. TITLE MicroRNA-9 directs late organizer activity of the midbrain-hindbrain boundary JOURNAL Nat Neurosci 11 (6), 641-648 (2008) PUBMED 18454145 REFERENCE 8 (bases 1 to 87) AUTHORS Kapsimali M, Kloosterman WP, de Bruijn E, Rosa F, Plasterk RH and Wilson SW. TITLE MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system JOURNAL Genome Biol 8 (8), R173 (2007) PUBMED 17711588 REFERENCE 9 (bases 1 to 87) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 REFERENCE 10 (bases 1 to 87) AUTHORS Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M and Tuschl T. TITLE The developmental miRNA profiles of zebrafish as determined by small RNA cloning JOURNAL Genes Dev 19 (11), 1288-1293 (2005) PUBMED 15937218 COMMENT PROVISIONAL REFSEQ: This record is based on preliminary annotation provided by NCBI staff in collaboration with miRBase. The reference sequence was derived from BX664610.10. Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript is intronless :: LM609096.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-87 BX664610.10 157148-157234 c FEATURES Location/Qualifiers source 1..87 /organism="Danio rerio" /mol_type="transcribed RNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="22" /map="22" gene 1..87 /gene="mir9-4" /gene_synonym="dre-mir-9-4" /note="microRNA 9-4" /db_xref="GeneID:100033555" /db_xref="miRBase:MI0001882" /db_xref="ZFIN:ZDB-MIRNAG-081013-3" precursor_RNA 1..87 /gene="mir9-4" /gene_synonym="dre-mir-9-4" /product="microRNA 9-4" /db_xref="GeneID:100033555" /db_xref="miRBase:MI0001882" /db_xref="ZFIN:ZDB-MIRNAG-081013-3" exon 1..87 /gene="mir9-4" /gene_synonym="dre-mir-9-4" /inference="alignment:Splign:2.1.0" ncRNA 15..37 /ncRNA_class="miRNA" /gene="mir9-4" /gene_synonym="dre-mir-9-4" /product="dre-miR-9-5p" /db_xref="miRBase:MIMAT0001769" /db_xref="GeneID:100033555" /db_xref="miRBase:MI0001882" /db_xref="ZFIN:ZDB-MIRNAG-081013-3" ncRNA 53..74 /ncRNA_class="miRNA" /gene="mir9-4" /gene_synonym="dre-mir-9-4" /product="dre-miR-9-4-3p" /db_xref="miRBase:MIMAT0031932" /db_xref="GeneID:100033555" /db_xref="miRBase:MI0001882" /db_xref="ZFIN:ZDB-MIRNAG-081013-3" ORIGIN
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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