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2022-01-24 12:38:48, GGRNA : RefSeq release 209 (Nov, 2021)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X2, misc_RNA. (3900 bp)
LOCUS XR_005506194 3900 bp RNA linear ROD 21-JAN-2021 DEFINITION PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X2, misc_RNA. ACCESSION XR_005506194 VERSION XR_005506194.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational...
XR_005506194.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X5, misc_RNA. (3792 bp)
LOCUS XR_593163 3792 bp RNA linear ROD 21-JAN-2021 DEFINITION PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X5, misc_RNA. ACCESSION XR_593163 VERSION XR_593163.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis....
XR_593163.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X3, misc_RNA. (3577 bp)
LOCUS XR_593161 3577 bp RNA linear ROD 21-JAN-2021 DEFINITION PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X3, misc_RNA. ACCESSION XR_593161 VERSION XR_593161.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis....
XR_593161.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X4, misc_RNA. (3794 bp)
LOCUS XR_593162 3794 bp RNA linear ROD 21-JAN-2021 DEFINITION PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X4, misc_RNA. ACCESSION XR_593162 VERSION XR_593162.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis....
XR_593162.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X1, mRNA. (5878 bp)
LOCUS XM_234465 5878 bp mRNA linear ROD 21-JAN-2021 DEFINITION PREDICTED: Rattus norvegicus NRDE-2, necessary for RNA interference, domain containing (Nrde2), transcript variant X1, mRNA. ACCESSION XM_234465 VERSION XM_234465.10 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This...
XM_234465.10 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus TNF receptor superfamily member 9 (Tnfrsf9), mRNA. (1410 bp)
X and Suo X. TITLE Molecular cloning and protein characterization of swine 4-1BB JOURNAL Vet. Immunol. Immunopathol. 153 (1-2), 35-44 (2013) PUBMED 23453329 REFERENCE 2 (bases 1 to 1410) AUTHORS Shi Y, Hu S, Song Q, Yu S, Zhou X, Yin J, Qin L and Qian H. TITLE Gene silencing of 4-1BB by RNA interference inhibits acute rejection in rats with liver transplantation JOURNAL Biomed Res Int 2013, 192738 (2013) PUBMED 23484089 REMARK GeneRIF: gene silencing of 4-1BB by RNA interference inhibits the acute rejection in rats with liver transplantation. REFERENCE 3 (bases 1 to 1410) AUTHORS Zhang J, Chen...
Synonym: 4-1BB
NM_001025773.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant 1, mRNA. (7378 bp)
by NCBI staff. The reference sequence was derived from JACYVU010000162.1 and FM038730.1. On Sep 18, 2014 this sequence version replaced NM_001191765.1. Summary: This gene encodes a member of the argonaute family of proteins, which associate with small RNAs and have important roles in RNA interference (RNAi) and RNA silencing. This protein binds to microRNAs (miRNAs) or small interfering RNAs (siRNAs) and represses translation of mRNAs that are complementary to them. It is also involved in transcriptional gene silencing (TGS) of promoter regions that are complementary to bound short antigene...
Synonym: Eif2c1
NM_001191765.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus angiopoietin-like 3 (Angptl3), mRNA. (1785 bp)
inference="alignment:Splign:2.1.0" exon 876..1764 /gene="Angptl3" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1785) AUTHORS Zhao Y, Goto M, Vaziri ND, Khazaeli M, Liu H, Farahanchi N, Khanifar E, Farzaneh T, Haslett PA, Moradi H and Soundarapandian MM. TITLE RNA Interference Targeting Liver Angiopoietin-Like Protein 3 Protects from Nephrotic Syndrome in a Rat Model Via Amelioration of Pathologic Hypertriglyceridemia JOURNAL J Pharmacol Exp Ther 376 (3), 428-435 (2021) PUBMED 33443084 REMARK GeneRIF: RNA Interference Targeting Liver Angiopoietin-Like Protein 3 Protects...
NM_001025065.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant 1, mRNA. (7378 bp)
REFERENCE COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from JACYVU010000162.1 and FM038730.1. Summary: This gene encodes a member of the argonaute family of proteins, which associate with small RNAs and have important roles in RNA interference (RNAi) and RNA silencing. This protein binds to microRNAs (miRNAs) or small interfering RNAs (siRNAs) and represses translation of mRNAs that are complementary to them. It is also involved in transcriptional gene silencing (TGS) of promoter regions that are complementary to bound short antigene...
Synonym: Eif2c1
NM_001317181.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus transmembrane protein 167B (Tmem167b), mRNA. (644 bp)
STS 481..640 /gene="Tmem167b" /gene_synonym="RGD1564454" /standard_name="BM390539" /db_xref="UniSTS:260786" ORIGIN // REFERENCE 1 (bases 1 to 644) AUTHORS Wendler F, Gillingham AK, Sinka R, Rosa-Ferreira C, Gordon DE, Franch-Marro X, Peden AA, Vincent JP and Munro S. TITLE A genome-wide RNA interference screen identifies two novel components of the metazoan secretory pathway JOURNAL EMBO J. 29 (2), 304-314 (2010) PUBMED 19942856...
Synonym: RGD1564454
NM_001135260.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus janus kinase and microtubule interacting protein 1 (Jakmip1), mRNA. (2410 bp)
Regulator of Neuronal Translation, Modulates Synaptic Function and Autistic-like Behaviors in Mouse JOURNAL Neuron 88 (6), 1173-1191 (2015) PUBMED 26627310 REFERENCE 2 (bases 1 to 2410) AUTHORS Vidal RL, Fuentes P, Valenzuela JI, Alvarado-Diaz CP, Ramirez OA, Kukuljan M and Couve A. TITLE RNA interference of Marlin-1/Jakmip1 results in abnormal morphogenesis and migration of cortical pyramidal neurons JOURNAL Mol Cell Neurosci 51 (1-2), 1-11 (2012) PUBMED 22828129 REMARK GeneRIF: RNA interference of Marlin-1 in vivo results in abnormal migration and abnormal morphology of newborn pyramidal...
Synonym: Marlin-1; Marlin1
NM_001033894.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), mRNA. (3150 bp)
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 933..1295 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1428..2705 /gene="Ago3" /gene_synonym="Eif2c3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-...
Synonym: Eif2c3
NM_001271193.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus Tcl1 family Akt coactivator A (Tcl1a), mRNA. (1324 bp)
regulate self-renewal in embryonic stem cells JOURNAL Genes Dev. 21 (20), 2545-2557 (2007) PUBMED 17938240 REFERENCE 3 (bases 1 to 1324) AUTHORS Ivanova N, Dobrin R, Lu R, Kotenko I, Levorse J, DeCoste C, Schafer X, Lun Y and Lemischka IR. TITLE Dissecting self-renewal in stem cells with RNA interference JOURNAL Nature 442 (7102), 533-538 (2006) PUBMED 16767105 REFERENCE 4 (bases 1 to 1324) AUTHORS Narducci MG, Fiorenza MT, Kang SM, Bevilacqua A, Di Giacomo M, Remotti D, Picchio MC, Fidanza V, Cooper MD, Croce CM, Mangia F and Russo G. TITLE TCL1 participates in early embryonic development and...
Synonym: Tcl1
NM_001109601.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X2, mRNA. (6896 bp)
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 385..747 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 880..2166 /gene="Ago1" /gene_synonym="Eif2c1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-...
Synonym: Eif2c1
XM_039110021.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X3, mRNA. (6887 bp)
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 385..747 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 880..2157 /gene="Ago1" /gene_synonym="Eif2c1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-...
Synonym: Eif2c1
XM_017593401.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X5, mRNA. (13190 bp)
misc_feature <1509..1727 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1521..1523,1608..1610,1620..1622,1674..1676, 1695..1697,1701..1703) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212"...
Synonym: Eif2c3
XM_039110020.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X4, mRNA. (6667 bp)
misc_feature 177..518 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(312..314,399..401,411..413,465..467,486..488, 492..494) /gene="Ago1" /gene_synonym="Eif2c1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature...
Synonym: Eif2c1
XM_039110022.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X3, mRNA. (11988 bp)
misc_feature 184..525 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(319..321,406..408,418..420,472..474,493..495, 499..501) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature...
Synonym: Eif2c3
XM_039110019.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC component 1 (Ago1), transcript variant X1, mRNA. (7326 bp)
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 871..1233 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1366..2652 /gene="Ago1" /gene_synonym="Eif2c1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-...
Synonym: Eif2c1
XM_008764025.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus hypoxia inducible factor 3 subunit alpha (Hif3a), transcript variant 2, mRNA. (2107 bp)
Differentiation Correlated with HIF-3alpha Signalling in Bone Marrow Mesenchymal Stem Cells. Publication Status: Online-Only REFERENCE 2 (bases 1 to 2107) AUTHORS Drevytska T, Gonchar E, Okhai I, Lynnyk O, Mankovska I, Klionsky D and Dosenko V. TITLE The protective effect of Hif3a RNA interference and HIF-prolyl hydroxylase inhibition on cardiomyocytes under anoxia-reoxygenation JOURNAL Life Sci 202, 131-139 (2018) PUBMED 29660430 REMARK GeneRIF: Hif3a RNA interference and HIF-prolyl hydroxylase inhibition protect cardiomyocytes against anoxia-reoxygenation injury via the HIF signaling pathway...
Synonym: Ipas; Mop7
NM_001388512.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus spliceosome associated factor 3, U4/U6 recycling protein (Sart3), transcript variant X3, mRNA. (3732 bp)
misc_feature 489..>1517 /gene="Sart3" /note="Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]; Region: RNA14; COG5107" /db_xref="CDD:227438" misc_feature 1134..>1595 /gene="Sart3" /note="NRDE-2, necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:285605" misc_feature 2247..2468 /gene="Sart3" /note="RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins; Region: RRM1_SART3; cd12391" /db_xref="CDD:240837" misc_feature 2529..2771 /gene="Sart3" /note="RNA recognition...
XM_006249502.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X2, mRNA. (14685 bp)
misc_feature 2881..3222 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(3016..3018,3103..3105,3115..3117,3169..3171, 3190..3192,3196..3198) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212"...
Synonym: Eif2c3
XM_008764024.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X1, mRNA. (14721 bp)
misc_feature 2917..3258 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(3052..3054,3139..3141,3151..3153,3205..3207, 3226..3228,3232..3234) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212"...
Synonym: Eif2c3
XM_017593400.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus interferon induced transmembrane protein 1 (Ifitm1), mRNA. (672 bp)
to influenza A H1N1 virus, West Nile virus, and dengue virus JOURNAL Cell 139 (7), 1243-1254 (2009) PUBMED 20064371 REFERENCE 8 (bases 1 to 672) AUTHORS Lickert H, Cox B, Wehrle C, Taketo MM, Kemler R and Rossant J. TITLE Dissecting Wnt/beta-catenin signaling during gastrulation using RNA interference in mouse embryos JOURNAL Development 132 (11), 2599-2609 (2005) PUBMED 15857914...
NM_001106314.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus golgi SNAP receptor complex member 2 (Gosr2), mRNA. (2099 bp)
REFERENCE 1 (bases 1 to 2099) AUTHORS Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA. TITLE Defining the membrane proteome of NK cells JOURNAL J Mass Spectrom 45 (1), 1-25 (2010) PUBMED 19946888 REFERENCE 2 (bases 1 to 2099) AUTHORS Suga K, Hattori H, Saito A and Akagawa K. TITLE RNA interference-mediated silencing of the syntaxin 5 gene induces Golgi fragmentation but capable of transporting vesicles JOURNAL FEBS Lett 579 (20), 4226-4234 (2005) PUBMED 16081076 REFERENCE 3 (bases 1 to 2099) AUTHORS Peng J, Huang CH, Short MK and Jubinsky PT. TITLE Magmas gene structure and evolution...
NM_031685.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus spliceosome associated factor 3, U4/U6 recycling protein (Sart3), transcript variant X1, mRNA. (3932 bp)
misc_feature 581..>1717 /gene="Sart3" /note="Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]; Region: RNA14; COG5107" /db_xref="CDD:227438" misc_feature 1334..>1795 /gene="Sart3" /note="NRDE-2, necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:285605" misc_feature 2447..2668 /gene="Sart3" /note="RNA recognition motif 1 in squamous cell carcinoma antigen recognized by T-cells 3 (SART3) and similar proteins; Region: RRM1_SART3; cd12391" /db_xref="CDD:240837" misc_feature 2729..2971 /gene="Sart3" /note="RNA recognition...
XM_006249501.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC catalytic component 2 (Ago2), transcript variant X1, mRNA. (13556 bp)
gene="Ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 711..1073 /gene="Ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(867..869,954..956,966..968,1020..1022,1041..1043, 1047..1049) /gene="Ago2" /note="nucleic acid-binding interface [nucleotide...
XM_039080221.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus argonaute RISC component 4 (Ago4), transcript variant X2, mRNA. (6489 bp)
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 1023..1373 /gene="Ago4" /gene_synonym="Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1179..1181,1266..1268,1278..1280,1332..1334, 1353..1355,1359..1361) /gene="Ago4" /gene_synonym="Eif2c4" /note="nucleic acid-binding...
Synonym: Eif2c4
XM_039109632.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus notochord homeobox (Noto), mRNA. (738 bp)
of node formation, nodal ciliogenesis and cilia positioning by Noto and Foxj1 JOURNAL Development 139 (7), 1276-1284 (2012) PUBMED 22357932 REFERENCE 2 (bases 1 to 738) AUTHORS Vidigal JA, Morkel M, Wittler L, Brouwer-Lehmitz A, Grote P, Macura K and Herrmann BG. TITLE An inducible RNA interference system for the functional dissection of mouse embryogenesis JOURNAL Nucleic Acids Res 38 (11), e122 (2010) PUBMED 20350929 REFERENCE 3 (bases 1 to 738) AUTHORS Zizic Mitrecic M, Mitrecic D, Pochet R, Kostovic-Knezevic L and Gajovic S. TITLE The mouse gene Noto is expressed in the tail bud and...
Synonym: RGD1562910
NM_001192014.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus autophagy related 4B, cysteine peptidase (Atg4b), mRNA. (2471 bp)
for genome-wide screens of intracellular proteolytic cleavage JOURNAL Genome Biol. 9 (4), R64 (2008) PUBMED 18387192 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 2471) AUTHORS Yoshimura K, Shibata M, Koike M, Gotoh K, Fukaya M, Watanabe M and Uchiyama Y. TITLE Effects of RNA interference of Atg4B on the limited proteolysis of LC3 in PC12 cells and expression of Atg4B in various rat tissues JOURNAL Autophagy 2 (3), 200-208 (2006) PUBMED 16874114 REFERENCE 6 (bases 1 to 2471) AUTHORS Tanida I, Ueno T and Kominami E. TITLE LC3 conjugation system in mammalian autophagy JOURNAL...
Synonym: Apg4b
NM_001025711.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus BRF1, RNA polymerase III transcription initiation factor subunit (Brf1), mRNA. (2380 bp)
JOURNAL Nucleic Acids Res. 34 (1), 286-294 (2006) PUBMED 16407335 REMARK Publication Status: Online-Only REFERENCE 7 (bases 1 to 2380) AUTHORS Raineri I, Wegmueller D, Gross B, Certa U and Moroni C. TITLE Roles of AUF1 isoforms, HuR and BRF1 in ARE-dependent mRNA turnover studied by RNA interference JOURNAL Nucleic Acids Res. 32 (4), 1279-1288 (2004) PUBMED 14976220 REMARK Publication Status: Online-Only...
NM_001106761.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus replication protein A3 (Rpa3), mRNA. (617 bp)
exon 315..617 /gene="Rpa3" /inference="alignment:Splign:2.0.8" ORIGIN // REFERENCE 1 (bases 1 to 617) AUTHORS McJunkin K, Mazurek A, Premsrirut PK, Zuber J, Dow LE, Simon J, Stillman B and Lowe SW. TITLE Reversible suppression of an essential gene in adult mice using transgenic RNA interference JOURNAL Proc. Natl. Acad. Sci. U.S.A. 108 (17), 7113-7118 (2011) PUBMED 21482754 REFERENCE 2 (bases 1 to 617) AUTHORS Sakaguchi K, Ishibashi T, Uchiyama Y and Iwabata K. TITLE The multi-replication protein A (RPA) system--a new perspective JOURNAL FEBS J. 276 (4), 943-963 (2009) PUBMED 19154342 REMARK...
NM_001106584.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus potassium voltage-gated channel subfamily Q member 2 (Kcnq2), mRNA. (4158 bp)
expression may be ascribed to the suppression by glucocorticoid activity. Erratum:[Cell Tissue Res. 2018 Mar 19;:. PMID: 29552724] REFERENCE 5 (bases 1 to 4158) AUTHORS Valdor M, Wagner A, Rohrs V, Berg J, Fechner H, Schroder W, Tzschentke TM, Bahrenberg G, Christoph T and Kurreck J. TITLE RNA interference-based functional knockdown of the voltage-gated potassium channel Kv7.2 in dorsal root ganglion neurons after in vitro and in vivo gene transfer by adeno-associated virus vectors JOURNAL Mol Pain 14, 1744806917749669 (2018) PUBMED 29212407 REMARK GeneRIF: RNA interference-mediated silencing...
NM_133322.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus G-rich RNA sequence binding factor 1 (Grsf1), mRNA. (2724 bp)
RNA biology from an atlas of mammalian mRNA-binding proteins JOURNAL Cell 149 (6), 1393-1406 (2012) PUBMED 22658674 REFERENCE 5 (bases 1 to 2724) AUTHORS Lickert H, Cox B, Wehrle C, Taketo MM, Kemler R and Rossant J. TITLE Dissecting Wnt/beta-catenin signaling during gastrulation using RNA interference in mouse embryos JOURNAL Development 132 (11), 2599-2609 (2005) PUBMED 15857914...
NM_001100890.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus hypoxia inducible factor 3 subunit alpha (Hif3a), transcript variant 1, mRNA. (2065 bp)
Differentiation Correlated with HIF-3alpha Signalling in Bone Marrow Mesenchymal Stem Cells. Publication Status: Online-Only REFERENCE 2 (bases 1 to 2065) AUTHORS Drevytska T, Gonchar E, Okhai I, Lynnyk O, Mankovska I, Klionsky D and Dosenko V. TITLE The protective effect of Hif3a RNA interference and HIF-prolyl hydroxylase inhibition on cardiomyocytes under anoxia-reoxygenation JOURNAL Life Sci 202, 131-139 (2018) PUBMED 29660430 REMARK GeneRIF: Hif3a RNA interference and HIF-prolyl hydroxylase inhibition protect cardiomyocytes against anoxia-reoxygenation injury via the HIF signaling pathway...
Synonym: Ipas; Mop7
NM_022528.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus deoxyguanosine kinase (Dguok), mRNA. (997 bp)
the human sperm nucleus JOURNAL Proteomics 11 (13), 2714-2726 (2011) PUBMED 21630459 REFERENCE 5 (bases 1 to 997) AUTHORS Loh SH, Francescut L, Lingor P, Bahr M and Nicotera P. TITLE Identification of new kinase clusters required for neurite outgrowth and retraction by a loss-of-function RNA interference screen JOURNAL Cell Death Differ. 15 (2), 283-298 (2008) PUBMED 18007665 REFERENCE 6 (bases 1 to 997) AUTHORS Johansson K, Ramaswamy S, Ljungcrantz C, Knecht W, Piskur J, Munch-Petersen B, Eriksson S and Eklund H. TITLE Structural basis for substrate specificities of cellular...
NM_001106602.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus fukutin related protein (Fkrp), mRNA. (2860 bp)
PUBMED 21296577 REFERENCE 4 (bases 1 to 2860) AUTHORS Wang CH, Chan YM, Tang RH, Xiao B, Lu P, Keramaris-Vrantsis E, Zheng H, Qiao C, Jiang J, Li J, Ma HI, Lu Q and Xiao X. TITLE Post-Natal knockdown of fukutin-related protein expression in muscle by long-termRNA interference induces dystrophic pathology [corrected] JOURNAL Am. J. Pathol. 178 (1), 261-272 (2011) PUBMED 21224063 REMARK Erratum:[Am J Pathol. 2011 Mar;178(3):1406] REFERENCE 5 (bases 1 to 2860) AUTHORS Chan YM, Keramaris-Vrantsis E, Lidov HG, Norton JH, Zinchenko N, Gruber HE, Thresher R, Blake DJ, Ashar J, Rosenfeld J and Lu QL....
NM_001025678.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus kinesin family member C1 (Kifc1), mRNA. (2316 bp)
PUBMED 16371587 REFERENCE 4 (bases 1 to 2316) AUTHORS Zhu C, Zhao J, Bibikova M, Leverson JD, Bossy-Wetzel E, Fan JB, Abraham RT and Jiang W. TITLE Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference JOURNAL Mol Biol Cell 16 (7), 3187-3199 (2005) PUBMED 15843429 REFERENCE 5 (bases 1 to 2316) AUTHORS Yang WX and Sperry AO. TITLE C-terminal kinesin motor KIFC1 participates in acrosome biogenesis and vesicle transport JOURNAL Biol Reprod 69 (5), 1719-1729 (2003) PUBMED 12826589 REMARK GeneRIF: KIFC1, perhaps in...
NM_001005878.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus kinesin family member 22 (Kif22), mRNA. (2098 bp)
PUBMED 18485706 REFERENCE 3 (bases 1 to 2098) AUTHORS Zhu C, Zhao J, Bibikova M, Leverson JD, Bossy-Wetzel E, Fan JB, Abraham RT and Jiang W. TITLE Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference JOURNAL Mol Biol Cell 16 (7), 3187-3199 (2005) PUBMED 15843429 REFERENCE 4 (bases 1 to 2098) AUTHORS Dickins RA, Frew IJ, House CM, O'Bryan MK, Holloway AJ, Haviv I, Traficante N, de Kretser DM and Bowtell DD. TITLE The ubiquitin ligase component Siah1a is required for completion of meiosis I in male mice JOURNAL...
NM_001009645.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus trefoil factor 1 (Tff1), mRNA. (463 bp)
expression is restricted to neurons. Publication Status: Online-Only REFERENCE 5 (bases 1 to 463) AUTHORS Fu T, Kalbacher H and Hoffmann W. TITLE TFF1 is differentially expressed in stationary and migratory rat gastric epithelial cells (RGM-1) after in vitro wounding: influence of TFF1 RNA interference on cell migration JOURNAL Cell Physiol Biochem 32 (4), 997-1010 (2013) PUBMED 24107452 REMARK GeneRIF: Tff1 expression was up-regulated in migratory cells. No unequivocal signs of the epithelial-mesenchymal transition were detectable in migratory cells. Transfection of RGM-1 cells with Tff1-...
Synonym: Ps2
NM_057129.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus kinesin family member 20A (Kif20a), mRNA. (2949 bp)
REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2949) AUTHORS Zhu C, Zhao J, Bibikova M, Leverson JD, Bossy-Wetzel E, Fan JB, Abraham RT and Jiang W. TITLE Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference JOURNAL Mol. Biol. Cell 16 (7), 3187-3199 (2005) PUBMED 15843429 REFERENCE 4 (bases 1 to 2949) AUTHORS Neef R, Preisinger C, Sutcliffe J, Kopajtich R, Nigg EA, Mayer TU and Barr FA. TITLE Phosphorylation of mitotic kinesin-like protein 2 by polo-like kinase 1 is required for cytokinesis...
NM_001108426.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus inhibitor of nuclear factor kappa B kinase subunit beta (Ikbkb), mRNA. (3525 bp)
PUBMED 31549412 REMARK GeneRIF: miR-218 regulates diabetic nephropathy via targeting IKK-beta and modulating NK-kappaB-mediated inflammation. REFERENCE 3 (bases 1 to 3525) AUTHORS Wei SF, Sun JJ, Zhou N, Li XL, Lin Y, Zhang YD, Zhang YR and Wu LY. TITLE Protective effect of RNA interference targeting Ikkbeta on hepatic fibrosis in rats JOURNAL J Cell Biochem 120 (11), 18894-18900 (2019) PUBMED 31297885 REMARK GeneRIF: Protective effect of RNA interference targeting Ikkbeta on hepatic fibrosis in rats. REFERENCE 4 (bases 1 to 3525) AUTHORS Dondelinger Y, Delanghe T, Priem D, Wynosky-Dolfi MA,...
Synonym: AIM-1; IKK2
NM_053355.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X9, mRNA. (6047 bp)
site" /db_xref="CDD:350189" misc_feature 2364..2630 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:397444" misc_feature 3132..3500 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(3312..3314,3378..3380,3390..3392,3444..3446, 3468..3470,3474..3476) /...
XM_039113365.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus golgi SNAP receptor complex member 1 (Gosr1), mRNA. (2726 bp)
REFERENCE 3 (bases 1 to 2726) AUTHORS Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA. TITLE Defining the membrane proteome of NK cells JOURNAL J Mass Spectrom 45 (1), 1-25 (2010) PUBMED 19946888 REFERENCE 4 (bases 1 to 2726) AUTHORS Suga K, Hattori H, Saito A and Akagawa K. TITLE RNA interference-mediated silencing of the syntaxin 5 gene induces Golgi fragmentation but capable of transporting vesicles JOURNAL FEBS Lett 579 (20), 4226-4234 (2005) PUBMED 16081076 REFERENCE 5 (bases 1 to 2726) AUTHORS Loh E, Peter F, Subramaniam VN and Hong W. TITLE Mammalian Bet3 functions as a...
Synonym: GOS28; p28
NM_053584.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus synaptotagmin 9 (Syt9), mRNA. (1506 bp)
release. REFERENCE 5 (bases 1 to 1506) AUTHORS Gauthier BR and Wollheim CB. TITLE Synaptotagmins bind calcium to release insulin JOURNAL Am J Physiol Endocrinol Metab 295 (6), E1279-E1286 (2008) PUBMED 18713958 REMARK Review article REFERENCE 6 (bases 1 to 1506) AUTHORS Fukuda M. TITLE RNA interference-mediated silencing of synaptotagmin IX, but not synaptotagmin I, inhibits dense-core vesicle exocytosis in PC12 cells JOURNAL Biochem J 380 (Pt 3), 875-879 (2004) PUBMED 15015935 REFERENCE 7 (bases 1 to 1506) AUTHORS Tucker WC, Edwardson JM, Bai J, Kim HJ, Martin TF and Chapman ER. TITLE...
Synonym: Sytv
NM_053324.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus kinesin family member 23 (Kif23), mRNA. (3326 bp)
PUBMED 16103226 REFERENCE 5 (bases 1 to 3326) AUTHORS Zhu C, Zhao J, Bibikova M, Leverson JD, Bossy-Wetzel E, Fan JB, Abraham RT and Jiang W. TITLE Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference JOURNAL Mol. Biol. Cell 16 (7), 3187-3199 (2005) PUBMED 15843429 REFERENCE 6 (bases 1 to 3326) AUTHORS Tomas A, Futter C and Moss SE. TITLE Annexin 11 is required for midbody formation and completion of the terminal phase of cytokinesis JOURNAL J. Cell Biol. 165 (6), 813-822 (2004) PUBMED 15197175 REFERENCE 7...
NM_001108155.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X8, mRNA. (6155 bp)
site" /db_xref="CDD:350189" misc_feature 2129..2395 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:397444" misc_feature 2897..3265 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(3077..3079,3143..3145,3155..3157,3209..3211, 3233..3235,3239..3241) /...
XM_039113364.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X7, mRNA. (6069 bp)
site" /db_xref="CDD:350189" misc_feature 2043..2309 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:397444" misc_feature 2811..3179 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(2991..2993,3057..3059,3069..3071,3123..3125, 3147..3149,3153..3155) /...
XM_039113363.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X6, mRNA. (6202 bp)
site" /db_xref="CDD:350189" misc_feature 2176..2442 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:397444" misc_feature 2944..3312 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(3124..3126,3190..3192,3202..3204,3256..3258, 3280..3282,3286..3288) /...
XM_039113362.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus dicer 1 ribonuclease III (Dicer1), transcript variant X3, mRNA. (6257 bp)
site" /db_xref="CDD:350189" misc_feature 2231..2497 /gene="Dicer1" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:397444" misc_feature 2999..3367 /gene="Dicer1" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(3179..3181,3245..3247,3257..3259,3311..3313, 3335..3337,3341..3343) /...
XM_039113360.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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0.212 | 0.132 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.217 | 0.005 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]