2024-04-26 23:08:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001025773 1410 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus TNF receptor superfamily member 9 (Tnfrsf9), mRNA. ACCESSION NM_001025773 XM_575963 VERSION NM_001025773.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1410) AUTHORS Zhao X, Su H, Huang X, Xie L, Liu Z, Liu X and Suo X. TITLE Molecular cloning and protein characterization of swine 4-1BB JOURNAL Vet Immunol Immunopathol 153 (1-2), 35-44 (2013) PUBMED 23453329 REFERENCE 2 (bases 1 to 1410) AUTHORS Shi Y, Hu S, Song Q, Yu S, Zhou X, Yin J, Qin L and Qian H. TITLE Gene silencing of 4-1BB by RNA interference inhibits acute rejection in rats with liver transplantation JOURNAL Biomed Res Int 2013, 192738 (2013) PUBMED 23484089 REMARK GeneRIF: gene silencing of 4-1BB by RNA interference inhibits the acute rejection in rats with liver transplantation. REFERENCE 3 (bases 1 to 1410) AUTHORS Zhang J, Chen G, Zhou D and Wang Z. TITLE Expression of CD137 in the cerebral artery after experimental subarachnoid hemorrhage in rats: a pilot study JOURNAL Brain Res 1386, 200-208 (2011) PUBMED 21352817 REMARK GeneRIF: Upregulation of CD137 in the cerebral arterial wall may be important in the development of cerebral vasospasm following subarachnoid hemorrhage. REFERENCE 4 (bases 1 to 1410) AUTHORS Haga T, Suzuki J, Kosuge H, Ogawa M, Saiki H, Haraguchi G, Maejima Y, Isobe M and Uede T. TITLE Attenuation of experimental autoimmune myocarditis by blocking T cell activation through 4-1BB pathway JOURNAL J Mol Cell Cardiol 46 (5), 719-727 (2009) PUBMED 19233196 REMARK GeneRIF: Blockade of T cell activation through the 4-1BB/4-1BBL pathway regulates development of experimental autoimmune myocarditis. REFERENCE 5 (bases 1 to 1410) AUTHORS Abe J, Ueha S, Suzuki J, Tokano Y, Matsushima K and Ishikawa S. TITLE Increased Foxp3(+) CD4(+) regulatory T cells with intact suppressive activity but altered cellular localization in murine lupus JOURNAL Am J Pathol 173 (6), 1682-1692 (2008) PUBMED 19008373 REFERENCE 6 (bases 1 to 1410) AUTHORS Shao Z, Sun F, Koh DR and Schwarz H. TITLE Characterisation of soluble murine CD137 and its association with systemic lupus JOURNAL Mol Immunol 45 (15), 3990-3999 (2008) PUBMED 18640726 REFERENCE 7 (bases 1 to 1410) AUTHORS Goodwin RG, Din WS, Davis-Smith T, Anderson DM, Gimpel SD, Sato TA, Maliszewski CR, Brannan CI, Copeland NG, Jenkins NA et al. TITLE Molecular cloning of a ligand for the inducible T cell gene 4-1BB: a member of an emerging family of cytokines with homology to tumor necrosis factor JOURNAL Eur J Immunol 23 (10), 2631-2641 (1993) PUBMED 8405064 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC097483.1. On Jul 22, 2005 this sequence version replaced XM_575963.1. ##Evidence-Data-START## Transcript exon combination :: BC097483.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5756307, SAMEA5760400 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1410 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="5" /map="5q36" gene 1..1410 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="TNF receptor superfamily member 9" /db_xref="GeneID:500590" /db_xref="RGD:1598208" exon 1..405 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" exon 406..530 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" misc_feature 419..421 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="upstream in-frame stop codon" CDS 431..1207 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="tumor necrosis factor receptor superfamily, member 9" /codon_start=1 /product="tumor necrosis factor receptor superfamily member 9 precursor" /protein_id="NP_001020944.1" /db_xref="GeneID:500590" /db_xref="RGD:1598208" /translation="
MGSSCYNMVVTVLLVVGTEEVRATRNPCDSCEAGTFCSKYPPVCTSCPPSTYSSTGGQPNCDICRVCQGYFRFKKPCSSTHNAECECVEGFHCLGPKCTRCEKDCRPGQELTEQGCKNCGLGTFNDQDGAGVCRPWTNCSLDGRSVLKNGTKEKDVVCGPPVVSLSPSTTPSAVTTPERESGERPLQVLTLFLALTLALLLFLIFIILWFSVPKWLRKKFPHIFKQPFKKAVRTAQEEDACSCRFPEEEEGGGGSYEL"
sig_peptide 431..499 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 497..910 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="Tumor necrosis factor receptor superfamily member 9 (TNFRSF9), also known as CD137; Region: TNFRSF9; cd13410" /db_xref="CDD:276915" misc_feature 497..562 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="CRD1 [structural motif]; Region: CRD1" /db_xref="CDD:276915" misc_feature 569..685 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="CRD2 [structural motif]; Region: CRD2" /db_xref="CDD:276915" misc_feature 689..778 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="CRD3 [structural motif]; Region: CRD3" /db_xref="CDD:276915" misc_feature 785..904 /gene="Tnfrsf9" /gene_synonym="4-1BB" /note="CRD4 [structural motif]; Region: CRD4" /db_xref="CDD:276915" exon 531..635 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" exon 636..773 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" exon 774..843 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" exon 844..974 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" exon 975..1109 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" exon 1110..1386 /gene="Tnfrsf9" /gene_synonym="4-1BB" /inference="alignment:Splign:2.1.0" ORIGIN
ggaggaaggtcagctgggtgttttctctgcctctctgagctaacaggctttccaccgtagtggctgccttccaagtgttcactggtgaaaaggaacgattgagattttgtggggtggggaatcctgtgaagggatctttaatatcgagttattttcagtattagggttaaaccaaagaaaaacgtccaaacaaacaaacaaaaaaaatcaagcaaagaagaaaagtctaagatctgggtcaggctgtgacgctgtagctgcagctgccccaccccccaccatccgaccatcggtcattcctggaattcaggtgctgaaggccagccctcagcgtaaagagctgacagagaccctgtggccaggggttctgagttccagccaccattcattctttttcacctttggtgtcctgtgcatgtgacgtttcgctatgggaagcagctgttacaacatggtggtcaccgtgctgctggtggtgggcaccgaggaggtgagagccacgcggaacccctgtgacagctgtgaggctgggactttctgcagtaaataccctccggtctgcaccagctgccctccaagtacctactccagcacaggtggacagccgaactgtgacatctgcagagtgtgtcaaggctatttcaggttcaagaagccttgctcctctacccacaacgcagagtgtgagtgcgtggagggattccactgcttggggccaaagtgtaccaggtgtgagaaggactgcaggcccggccaggaactaacggagcagggttgtaaaaactgtggcttgggaacgtttaatgaccaggacggcgccggcgtctgccgaccctggacgaactgctctctagacggaaggtctgtgcttaagaatgggaccaaggagaaagacgtggtctgtggaccccctgtggtcagcctctctcccagtaccactcctagtgctgtgactactccagagagagaatcaggagagcgccccttgcaggttcttaccttgttcctggcgctgacattagcgctgctcctgttcctgatcttcatcattctctggttctctgtgcccaaatggctcaggaagaagttcccccacatattcaagcaaccatttaagaaggcggttagaactgctcaagaggaagatgcttgtagctgccggtttccagaggaagaagaaggaggaggaggaagctacgagctgtaatgtgccatcctaggagatgtggggaccctcaggaaaccgagaagcactaagacccccaccctcctagggagtagcacaagttaccccacccccctgttcttaaaaccatcctagatggcatttgagcacgcaccccgtccaagtctcttctgatgctaatatatttgttaatttttaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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