2024-04-24 05:05:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001135260 644 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus transmembrane protein 167B (Tmem167b), mRNA. ACCESSION NM_001135260 XM_001071753 XM_575014 VERSION NM_001135260.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 644) AUTHORS Wendler F, Gillingham AK, Sinka R, Rosa-Ferreira C, Gordon DE, Franch-Marro X, Peden AA, Vincent JP and Munro S. TITLE A genome-wide RNA interference screen identifies two novel components of the metazoan secretory pathway JOURNAL EMBO J 29 (2), 304-314 (2010) PUBMED 19942856 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473952.1. On or before Sep 29, 2008 this sequence version replaced XM_001071753.1, XM_575014.2. ##Evidence-Data-START## Transcript exon combination :: CB608751.1, FQ137388.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5760383 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..644 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="2" /map="2q34" gene 1..644 /gene="Tmem167b" /gene_synonym="RGD1564454" /note="transmembrane protein 167B" /db_xref="GeneID:499690" /db_xref="RGD:1564454" exon 1..196 /gene="Tmem167b" /gene_synonym="RGD1564454" /inference="alignment:Splign:2.1.0" CDS 187..411 /gene="Tmem167b" /gene_synonym="RGD1564454" /codon_start=1 /product="protein kish-B" /protein_id="NP_001128732.1" /db_xref="GeneID:499690" /db_xref="RGD:1564454" /translation="
MTNVYSLDGILVFGLLFVCTCAYFKKVPRLKTWLLSEKKGVWGVFYKAAVIGTRLHAAVAIACIVMAFYVLFIK"
misc_feature 217..324 /gene="Tmem167b" /gene_synonym="RGD1564454" /note="Protein of unknown function (DUF1242); Region: DUF1242; pfam06842" /db_xref="CDD:429150" exon 197..328 /gene="Tmem167b" /gene_synonym="RGD1564454" /inference="alignment:Splign:2.1.0" exon 329..644 /gene="Tmem167b" /gene_synonym="RGD1564454" /inference="alignment:Splign:2.1.0" ORIGIN
gtgcggcgtttctctctctctctctctctctctctctctctctctcggccctcgcgcttgcgtactacggctcgttcttgtcaccacggcccggatcgggaagtgtcaagtgggaaccaggttcccccgcctttgcagcctctacagctgaacccggacccctcacccgggccgggcactaccgccatgacgaacgtgtactccttggatgggattctggtgtttggtctgctctttgtttgcacctgtgcctacttcaagaaagtacctcgtctcaaaacctggctgctttcagagaagaagggagtttggggtgtattttacaaagctgctgtgattggaacccggctgcatgctgctgttgcaattgcctgcatcgtaatggccttttacgtcctgtttatcaaatgaattccaaaccatccagctcatcagctgccaacccaggggataaagatgaagaacttgtcggaaacctggacccagcataggagagttgagctaaaatcgtcagtgtccccaagatgacactgaagcgtctgcctgccacatgtggggaaaactcatggtcacaaacatttttgtttcaggggattccagaaagccaaccttttttgatctctgcattaatcagctcccagcag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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