GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

Gallus gallus argonaute 2, RISC catalytic component (AGO2), mRNA. (12501 bp)

misc_feature 390..614 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 642..794 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 795..1157 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

NM_001389549.2 - Gallus gallus (chicken) - NCBI - UCSC

Gallus gallus argonaute 1, RISC catalytic component (AGO1), mRNA. (6707 bp)

misc_feature 220..612 /gene="AGO1" /gene_synonym="EIF2C1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 640..792 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 793..1155 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...

Synonym: EIF2C1
NM_001317212.2 - Gallus gallus (chicken) - NCBI - UCSC

Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 1, mRNA. (3461 bp)

misc_feature 109..498 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 529..681 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 682..1044 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...

Synonym: EIF2C4
NM_001396480.1 - Gallus gallus (chicken) - NCBI - UCSC

Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 2, mRNA. (3579 bp)

misc_feature 362..616 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 647..799 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 800..1162 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...

Synonym: EIF2C4
NM_001039276.2 - Gallus gallus (chicken) - NCBI - UCSC

Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 3, mRNA. (3659 bp)

misc_feature 442..696 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 727..879 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 880..1242 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...

Synonym: EIF2C4
NM_001396481.1 - Gallus gallus (chicken) - NCBI - UCSC

PREDICTED: Gallus gallus argonaute 2, RISC catalytic component (AGO2), transcript variant X1, mRNA. (14192 bp)

misc_feature 301..528 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 556..708 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 709..1071 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...

XM_046910120.1 - Gallus gallus (chicken) - NCBI - UCSC

PREDICTED: Gallus gallus argonaute 2, RISC catalytic component (AGO2), transcript variant X1, mRNA. (14184 bp)

XM_040673464.2 - Gallus gallus (chicken) - NCBI - UCSC

PREDICTED: Gallus gallus argonaute 1, RISC catalytic component (AGO1), transcript variant X1, mRNA. (6715 bp)

misc_feature 393..617 /gene="AGO1" /gene_synonym="EIF2C1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 645..797 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 798..1160 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...

Synonym: EIF2C1
XM_046932028.1 - Gallus gallus (chicken) - NCBI - UCSC

PREDICTED: Gallus gallus argonaute 1, RISC catalytic component (AGO1), transcript variant X1, mRNA. (6712 bp)

Synonym: EIF2C1
XM_015297696.4 - Gallus gallus (chicken) - NCBI - UCSC

PREDICTED: Gallus gallus piwi-like protein 2 (LOC107049165), mRNA. (2851 bp)

misc_feature <175..525 /gene="LOC107049165" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 859..1002 /gene="LOC107049165" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1003..1356 /gene="LOC107049165" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like;...

XM_040689385.1 - Gallus gallus (chicken) - NCBI - UCSC

Data Export:

Debug Info:

0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Gallus gallus (chicken)?to=0&format=json
0.088 | 0.010 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Gallus gallus (chicken)?to=0&format=json
0.118 | 0.029 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))%26((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Gallus gallus (chicken)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.120 | 0.002 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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