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2024-05-01 14:08:52, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Gallus gallus testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X2, mRNA. (6672 bp)
LOCUS XM_046912383 6672 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X2, mRNA. ACCESSION XM_046912383 VERSION XM_046912383.1 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by...
XM_046912383.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X1, mRNA. (6671 bp)
LOCUS XM_046937982 6671 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X1, mRNA. ACCESSION XM_046937982 VERSION XM_046937982.1 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by...
XM_046937982.1 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus argonaute 2, RISC catalytic component (AGO2), mRNA. (12501 bp)
misc_feature 390..614 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 642..794 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 795..1157 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
NM_001389549.2 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus argonaute 1, RISC catalytic component (AGO1), mRNA. (6707 bp)
note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 640..792 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 793..1155 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
Synonym: EIF2C1
NM_001317212.2 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 1, mRNA. (3461 bp)
note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 529..681 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 682..1044 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
Synonym: EIF2C4
NM_001396480.1 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 2, mRNA. (3579 bp)
note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 647..799 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 800..1162 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
Synonym: EIF2C4
NM_001039276.2 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 3, mRNA. (3659 bp)
note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 727..879 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 880..1242 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
Synonym: EIF2C4
NM_001396481.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus argonaute 2, RISC catalytic component (AGO2), transcript variant X1, mRNA. (14192 bp)
misc_feature 301..528 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 556..708 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 709..1071 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_046910120.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus argonaute 2, RISC catalytic component (AGO2), transcript variant X1, mRNA. (14184 bp)
misc_feature 301..528 /gene="AGO2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 556..708 /gene="AGO2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 709..1071 /gene="AGO2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212"...
XM_040673464.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus argonaute 1, RISC catalytic component (AGO1), transcript variant X1, mRNA. (6715 bp)
note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 645..797 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 798..1160 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
Synonym: EIF2C1
XM_046932028.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus argonaute 1, RISC catalytic component (AGO1), transcript variant X1, mRNA. (6712 bp)
note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 645..797 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 798..1160 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD...
Synonym: EIF2C1
XM_015297696.4 - Gallus gallus (chicken) - NCBI - UCSC
Gallus gallus dicer 1, ribonuclease III (DICER1), mRNA. (6483 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2552..2611 /gene="DICER1" /gene_synonym="dicer" /note="propagated from UniProtKB/Swiss-Prot (Q25BN1.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 3029..3397 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209"...
Synonym: dicer
NM_001040465.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X2, mRNA. (10772 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2286..2552 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3054..3422 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918635.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X2, mRNA. (10773 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2286..2552 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3054..3422 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941796.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X5, mRNA. (10636 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2150..2416 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2918..3286 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918638.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X3, mRNA. (10639 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2153..2419 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2921..3289 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918636.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X5, mRNA. (10637 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2150..2416 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2918..3286 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941799.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X3, mRNA. (10640 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2153..2419 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2921..3289 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941797.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X7, mRNA. (10746 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2260..2526 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3028..3396 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918640.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X4, mRNA. (10744 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2258..2524 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3026..3394 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918637.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X1, mRNA. (10749 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2263..2529 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3031..3399 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918634.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X7, mRNA. (10747 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2260..2526 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3028..3396 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941801.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X4, mRNA. (10745 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2258..2524 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3026..3394 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941798.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X1, mRNA. (10750 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2263..2529 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3031..3399 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941795.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X8, mRNA. (10798 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2312..2578 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3080..3448 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918641.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X6, mRNA. (10795 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2309..2575 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3077..3445 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918639.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X8, mRNA. (10799 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2312..2578 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3080..3448 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941802.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X6, mRNA. (10796 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2309..2575 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3077..3445 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941800.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X11, mRNA. (15494 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 7007..7273 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 7775..8143 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941804.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X9, mRNA. (10852 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2366..2632 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3134..3502 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046918642.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X9, mRNA. (10853 bp)
note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2366..2632 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3134..3502 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD...
Synonym: dicer
XM_046941803.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus piwi-like protein 2 (LOC107049165), mRNA. (2851 bp)
gene="LOC107049165" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 859..1002 /gene="LOC107049165" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1003..1356 /gene="LOC107049165" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211"...
XM_040689385.1 - Gallus gallus (chicken) - NCBI - UCSC

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/gg/%22PAZ+domain%22
lang : en | div : | spe : gg | query_string : "PAZ domain" | format : html | download : 

0.000 | 0.000 | search_start;
0.077 | 0.077 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Gallus gallus (chicken)?to=0&format=json
0.149 | 0.073 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:PAZ+domain)%7C(nt:PAZ+domain)%7C(aa:PAZ+domain))?source=Gallus gallus (chicken)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.153 | 0.004 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]