2024-05-21 22:49:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046941804 15494 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X11, mRNA. ACCESSION XM_046941804 VERSION XM_046941804.1 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..15494 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="5" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..15494 /gene="DICER1" /gene_synonym="dicer" /note="dicer 1, ribonuclease III; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 11 ESTs, 865 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns" /db_xref="CGNC:8359" /db_xref="GeneID:423437" misc_feature 1 /gene="DICER1" /gene_synonym="dicer" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 5120..10885 /gene="DICER1" /gene_synonym="dicer" /codon_start=1 /product="endoribonuclease Dicer isoform X1" /protein_id="XP_046797760.1" /db_xref="GeneID:423437" /db_xref="CGNC:8359" /translation="
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLAIQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNIVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWKKSIDSKSFISIPSSSLVENENYCKHSTIVVPENAAHQGANRTSSAEKHDQMSVSYRTLLDESPSKLQIDVSAELAAINGVSYNKNLANGNCDLVNRDFCQGNQLNYCRQEIPVQPTTSYPIQNLYSSENQPKPSNECTLLSNKYLDGNANRSTSDGCPKMTLTTSTSTALNLSKDKVDSEKNTSSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYIVNQDKSNTDKWEKDETTKENLLANGKLDYDDDDEEDEDLMWRLPKEETDFEDDFLEYDQEHIKFIDSMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVPFSSDFDDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATGENCNSEQKNLSPNSVSACIVNSEPSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 5243..5836 /gene="DICER1" /gene_synonym="dicer" /note="DEXH-box helicase domain of endoribonuclease Dicer; Region: DEXHc_dicer; cd18034" /db_xref="CDD:350792" misc_feature order(5243..5254,5261..5263,5312..5335,5456..5458, 5645..5647,5738..5740) /gene="DICER1" /gene_synonym="dicer" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350792" misc_feature order(5420..5425,5492..5497,5570..5572,5576..5581, 5588..5590,5663..5671) /gene="DICER1" /gene_synonym="dicer" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350792" misc_feature 5930..6214 /gene="DICER1" /gene_synonym="dicer" /note="Partner-binding domain of the endoribonuclease Dicer; Region: Dicer_PBD; cd15903" /db_xref="CDD:277191" misc_feature order(5945..5950,5957..5959,5963..5968,6143..6148, 6155..6160,6167..6169,6176..6181,6188..6190) /gene="DICER1" /gene_synonym="dicer" /note="Trbp binding interface [polypeptide binding]; other site" /db_xref="CDD:277191" misc_feature 6233..6811 /gene="DICER1" /gene_synonym="dicer" /note="C-terminal helicase domain of the endoribonuclease Dicer; Region: SF2_C_dicer; cd18802" /db_xref="CDD:350189" misc_feature order(6464..6472,6680..6682,6737..6739,6743..6745) /gene="DICER1" /gene_synonym="dicer" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:350189" misc_feature order(6692..6694,6698..6700,6773..6775,6779..6781) /gene="DICER1" /gene_synonym="dicer" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 7007..7273 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 7775..8143 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(7964..7966,8003..8005,8021..8023,8033..8035, 8087..8089,8111..8113,8117..8119) /gene="DICER1" /gene_synonym="dicer" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239209" misc_feature 9008..>9283 /gene="DICER1" /gene_synonym="dicer" /note="Ribonuclease III family; Region: RIBOc; smart00535" /db_xref="CDD:197778" misc_feature order(9059..9064,9071..9076,9083..9085,9092..9097, 9104..9109,9113..9121,9149..9151) /gene="DICER1" /gene_synonym="dicer" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature 10112..10870 /gene="DICER1" /gene_synonym="dicer" /note="dsRNA-specific ribonuclease [Transcription]; Region: Rnc; COG0571" /db_xref="CDD:223644" polyA_site 15494 /gene="DICER1" /gene_synonym="dicer" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
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atatctagaggtcattgtagtatactccactagcagttaaaattaacttttatcaaagctaactacatttcttaaaaataaattttatccaataaactccttgggttttttccctcttttatttgaatggcaaccacagactactttaattgctttgtagatgcactcagaatatactgcagcagcaagttagagagaaaaatgtttgtgcacaataattgggaattgcaggcgtttttattgtaaatagtttgactgaaaagatggttaaaatcaagtagaatgaataacaaatataatttgatggacaataaaatatttaccatcacatgctgcagctgtctttaagggacataaaatgtaattcattcatactgtaatcttgctgcagaaatttgcaatctgcaccttatggatcacaattacctttaatagttttttgtaataattgtagctgaatatatctccaataaagttatggtctgttcaccttg
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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