LOCUS       XM_040689385            2851 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus piwi-like protein 2 (LOC107049165), mRNA.
ACCESSION   XM_040689385
VERSION     XM_040689385.1
DBLINK      BioProject: PRJNA698614
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052594.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2851
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="22"
                     /sex="female"
                     /tissue_type="blood"
                     /country="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..2851
                     /gene="LOC107049165"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="CGNC:72186"
                     /db_xref="GeneID:107049165"
     CDS             1..2760
                     /gene="LOC107049165"
                     /codon_start=1
                     /product="piwi-like protein 2"
                     /protein_id="XP_040545319.1"
                     /db_xref="GeneID:107049165"
                     /db_xref="CGNC:72186"
                     /translation="

MEPLRPFHHRAAPGGVPGARGRGLPPDVAAAAVVPARPSAPPVPEPAPSPEPLSSLLWSLGFSTRPSSLEPGERPVGRGAFSHAADPPTPPSPAGSDREVGAALPTRGRIQWHSGGGDVLPAVTSPERATALPSAELCPPVPGLQAAAPPGPPQAASKQAPTTKPAPKGTAVPVGLNLVQIHCQNDSVYQYHVTFSPEVECRSARFAMLKEQRAVTGDVTAFDGSILFLPILLPQPLSLKALRRTDGEEISITIQITKVLEPSSDLCIPFYNVVFRRAMRILDMKLVGRNFYDPSKANVLQRYRLQIWPGYSVSIRKKDGGLFLMVDTVHRIIRSESVLALMQSICKQSPSSFHDECTKQLVGSTVLTRYNNRTYRIDDIDWEKTPRDSFTLGSGEEITFVDYYSKTYGITVRELEQPLLVHRPKEKLMLGGKPRLDMVLLLPELTFLTGISEIKKDTRVLKDVMREMLQSPQQHYESLCSLLRRIQCNQEASRELSRWGLILSPDIHRTQGRVLPSERVNLRHCSFIPAEDVSWGREVVREAAISTVDMNCWLLVYPRRLQDVTKNLVALLRSACGPIGMQVNQPALVELKDERLETYVRTIRSILGNEDKVQLLLCITTGTKADVYSAIKKLCCVHSPVPSQVINAHSLLGHSAKLKSIVQKVLLQMNCKLGGELWGVDVPLKQLMVVGMDVSHGKGMRSVIGFVASTNQVLTKWYSRVVFQLPQQEIADSLRLCLANALQQFHEMNHCLPKKIVVYRDGVSDSQLDTVLRYEIPQLQKCFDTFENYSPSMAVLVVQKQMGTNFYTVSSEQHSAAPPGTVVDHSITSTQWQDFFLLAHCPRLGCSVPTRYICVLNTANLSAEHLQRLTFKLCHLYWNWPGTIRVPAPCKYAHRLAFLAGQVLQHEPHARLCNKLFFL"

     misc_feature    <175..525
                     /gene="LOC107049165"
                     /note="large tegument protein UL36; Provisional; Region:
                     PHA03247"
                     /db_xref="CDD:223021"
     misc_feature    859..1002
                     /gene="LOC107049165"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1003..1356
                     /gene="LOC107049165"
                     /note="PAZ domain, Piwi_like subfamily. In multi-cellular
                     organisms, the Piwi protein appears to be essential for
                     the maintenance of germline stem cells. In the Drosophila
                     male germline, Piwi was shown to be involved in the
                     silencing of retrotransposons in the...; Region:
                     PAZ_piwi_like; cd02845"
                     /db_xref="CDD:239211"
     misc_feature    order(1135..1137,1174..1176,1198..1200,1210..1212,
                     1264..1266,1315..1317,1321..1323)
                     /gene="LOC107049165"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239211"
     misc_feature    1387..2706
                     /gene="LOC107049165"
                     /note="PIWI domain, Piwi-like subfamily found in
                     eukaryotes. This domain is found in Piwi and closely
                     related proteins, where it is believed to perform a
                     crucial role in germline cells, via RNA silencing. RNA
                     silencing refers to a group of related...; Region:
                     Piwi_piwi-like_Euk; cd04658"
                     /db_xref="CDD:240016"
     misc_feature    order(1882..1884,1894..1896,1930..1941,1951..1953,
                     1981..1983,1990..1992,2002..2004,2014..2016)
                     /gene="LOC107049165"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240016"
     misc_feature    order(2077..2079,2083..2085,2281..2283,2680..2682)
                     /gene="LOC107049165"
                     /note="active site"
                     /db_xref="CDD:240016"
ORIGIN      

atggagccgctgcggcccttccaccatcgcgcggccccgggcggcgtgccgggtgcgcggggccgcggtttgcctccggacgtggccgccgccgcggttgtccccgcgcggccctcggccccccccgtgccggagcccgcgcccagcccggagccgctctcgtccctcctgtggagtttgggcttcagcacgcggccctcctcgctggagccgggggagcggcccgtcggccgtggggcgttcagccacgctgcggaccccccgacgccccccagcccggctggcagtgacagagaggtgggggcagcgctgcccacgcgcggccggatccaatggcacagtggtggaggggatgtgctgcccgctgttacctcccctgagagagccacagcgttgccctctgctgagctgtgccctcccgtgcctggactgcaggctgcagcaccgccgggacccccccaggctgccagcaaacaagcacccaccacgaagccggcgccgaagggaacagctgtgcccgtggggctgaatttggtgcagatccactgccagaacgactccgtctatcagtaccacgtcaccttcagccccgaggtggagtgcaggagcgcgcgcttcgccatgctgaaggagcagcgggcggtgacgggagatgtgacggcgttcgatggctccatcctcttcctgcccatcctgctgcctcagccgctcagcctgaaggcgctcaggaggacggacggggaggagatcagcatcaccatccagatcaccaaagtgctggagccgagctccgacctctgcatccccttctacaacgtggtgttccgcagagccatgaggatcctggacatgaagctggtgggcaggaatttctacgacccgtcgaaggccaacgtgctgcagcggtacaggctgcagatttggccgggttactccgtcagcatccgcaaaaaggacggcgggctcttcctgatggtggacaccgtccataggatcatccggagcgaatccgtgctggctttaatgcagtccatctgcaagcagagccccagcagcttccacgacgagtgcaccaagcagctggtgggcagcacggtgctgacccgctacaacaaccgcacgtaccgcatcgacgacatcgactgggaaaagaccccccgggacagcttcacgttgggcagcggggaggagatcaccttcgtggattactacagcaaaacgtatgggatcacagtgcgggagctggagcagccgctgctcgtccacaggcccaaggagaagctgatgctggggggcaagccccggctggacatggtgctgctgctgccggagctcaccttcctgaccggcatctcggagatcaagaaggacacccgcgtgctgaaggacgtgatgcgggagatgctgcagagcccccagcagcactacgagtctctgtgcagtttgctgcgccgcatccaatgcaaccaggaggcgtcgcgggagctgtcgcgttgggggctcatcctgagccccgacatccacaggacccagggacgcgttctgccctcggagcgggtcaacctgcggcactgctccttcatccccgccgaggacgtgagctggggcagggaggtggtgcgggaggccgccatctccacggtcgacatgaactgctggctcctggtgtacccgcggcgcctgcaggacgtgaccaagaatttggtggctctgctgaggagcgcctgcggccccatcggcatgcaggtcaaccaacccgccctggtggagctgaaggatgagcgcctcgagacctacgtgcgaaccatccgcagcattctgggcaatgaggacaaagtgcagctgctgctgtgcatcaccaccggcaccaaagcagacgtgtacagcgccatcaagaagctgtgctgcgtgcacagcccggtgccctcccaggtcatcaacgcgcactccctcctgggccactcggccaaactgaagagcatcgtgcagaaggtgctgctgcagatgaactgcaagctgggaggagagctctggggggtggacgtccctctgaagcagctgatggtggtcgggatggatgtgagccacggcaaagggatgcgctccgtcatcggcttcgtggccagcaccaatcaggtgctcaccaagtggtattcccgcgtcgtgttccagctgccccagcaggagatcgctgacagcctgcggctctgcctggccaacgcgctgcagcagttccatgagatgaaccactgcctgcccaagaagatcgtggtgtaccgcgacggcgtgtcggacagccagctggacacggtgctcagatacgagatcccccagctgcagaaatgcttcgacaccttcgagaactacagccccagcatggccgtgctggtggtgcagaagcagatgggcaccaatttctacaccgtctcctcggagcagcattcggccgcgccgccggggacggtggtggaccacagcatcaccagcacccagtggcaggacttcttcctgctggcgcactgcccccggctgggctgcagcgtccccacgaggtacatctgtgtgctgaacaccgccaacctgagcgcggagcacctgcagaggctgaccttcaagctgtgccacctgtactggaactggcccggcaccatccgcgttccggcgccctgcaaatacgcgcaccggttggccttcctggccggccaggtgctgcagcacgagccccacgcgcggctctgcaacaaactcttcttcctttaacccggcgctgcggcgctgctttgcttcctttccgtgcgtttctgcccgtcgttcctttggggcgttggaaagtgagtgggggggggggggg

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