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Previous release (v1)
2026-06-25 08:48:59, GGRNA : RefSeq release 233 (Jan, 2026)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
REFERENCE 1 (bases 1 to 134) AUTHORS Jorjani H, Kehr S, Jedlinski DJ, Gumienny R, Hertel J, Stadler PF, Zavolan M and Gruber AR. TITLE An updated human snoRNAome JOURNAL Nucleic Acids Res. 44 (11), 5068-5082 (2016) PUBMED 27174936 atgcatctatttgacagacctggagcagttgctatctgctgctatggtttccaccacagatgcaagaagaacatgtccttgcgctttccgtctgtctaattgtggcagctgagattgaatagaggaatacagga
position 63
AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res. 34 (Database issue), D140-D144 (2006) PUBMED 16381832 caaggcctatctatctagattcttcttggcctctctgagcatgcattcctgagactccaagaagaatctagacagataggccttg
position 58
tggtgctgcgctccagagaggcagaaaacgagtgggagctgaggtgtcttaaagccgttcctcagcctgggagaagatctctggcttcaggatggaggtcagggggtcgttcctggcggcctgcaggagacgcatggctacctggaggaagaatcgtgacaaggatggcttctcaaatcccgggtaccgagtccggcagaaggatctgggcatgatccacaaagctgccatcgcaggtgatgtgaacaaggtgatggagagcatcttgctcaggctgaatgacttgaacgacagggacaagaagaacaggactgctctacttttggcgtgtgcccatggccgtccaggagtggtagctgacctggtggccagaaaatgccagcttaacctcactgacagtgaaaacaggacagctctgatcaaggctgtacaatgtcaagaagaagtttgtgcatccatcctgctggaacatggcgccaacccaaatgttagagatatgtatggcaacactgctctgcactatgccattgataatgagaatatatcaatggcaagaaaactgcttgcatatggtgcagatattgaagcaagaagccagga...
position 382
variation 397 /gene="LINC01905" /replace="a" /replace="t" /db_xref="dbSNP:922356882" variation 398 /gene="LINC01905" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:933630941" variation 406 /gene="LINC01905" /replace="a" /replace="g" /db_xref="dbSNP:141259871" ORIGIN // tgatgcagcaagaaggcccttgccagatgccagcaacttgatattgaacttctcatcctccagaatggtttgcctctctgtcatacctcaagaggaacacaaagagtgatggcctgtcactctgatgcctctctctactcaaatggcagaaaccaaccaggtgatggccacagtggcagaacctaggaagccaagaagaaaccagagaatggagacacatggcagcaatggcaagtcatcagacccaggatttcccaaagaacactggtccaggaagatgctctgtgaaaaagtgttccctggtcggagaaatttgtgaaac...
position 197
g" /db_xref="dbSNP:1717272190" variation 404 /gene="NAALADL2-AS3" /replace="a" /replace="g" /db_xref="dbSNP:2474847338" variation 405 /gene="NAALADL2-AS3" /replace="a" /replace="t" /db_xref="dbSNP:1717271665" ORIGIN // cctatgacagacaaggcaagctctactctcagaagcaaaaattatatatctaggagtcagagtatgaatcaagaagaatggacttctgcttcttatctacctaatgccagataatgatgacagcaatgcattttctacattcatatcctcaatcatatggaatgcttactggaaaaccggtttaaaagaaaggtgactagttattggtcttgctctgacagccgtggaaaccatttgctgatgaaagcacaagcaacaacaacaaaaaagatgaataaactggatttcaacaaaaacacatttgtgcttcagagaacataatcaagaaagtgaaaaggcaacccaccaatgggagaacacagtttcaaaacatatatctaa...
position 70
gaggttgcagacataaacacaggattcatcagcatatgtgtggtttctgaacctatgggacaggatggcatcactcagggaaagagcacagagtcagaagaaaatatgacccaagaccaggccttgaagaactccgatatttaatgtttgggtagaagaaaaggcaaacgaaagtatctgaaaagatgggccagagaagagagaatcaaccaaggggagatggtcccagaagtcaaacagaagggagtgattcgctgtgatgaatgctgcagaggccaaataaggaaaagaagacagcaagaagaagccactttgagcccctatgatttcatctttgatccactcatccagcactccatactccttgatccctacccaccaaattctccttaaaagccctggtctccaaatgttcaaggcgaccgatttgagtaataaaactctagtctcccattta
position 364
Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 tttaccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttgggcaataatgctagcagagtacacacaagaagaaaagtaacagca
position 87
PUBMED 15740594 REMARK GeneRIF: Expression of gene HSPCO16 resulted in the apoptosis of these cells, which suggested that the apoptosis of dermal papilla cells might be associated with the expression of gene HSPC016 in vitro. gtttccggtggcagggtctggggaagcggcggcaggcgccatgtccggccgcgaaggtggcaagaagaagccactgaaacagcccaagaagcaggccaaggagatggacgagataaggctttcaagcagaaacaaaaagaggagcagaagaaactcgaggagctaaaagcgaaggccgcggggaaggggcccttggccacaggtggaattaagaaatctggcaaaaagtaagctgttccttgtgcctgaggagatggtgaccctttatttcatctgtatttaaacctctctattccctgccataacatcttttgccacgtatagctggaattaagtgttgtcttggagctgttgtacatttaagaataaacttt...
position 61
tcaaaagggaaatagtactcatcgaagatgtgcctttgctaggaactaggacaagggtggcctttataaattcatgaagagaaggagccagcatatgaacttgctgcctatctttagcaaggagatgcaaatgacatccacaaacctcttctgctgtatacctggatgaaagcaaggctagctgtgtgtcctatggcaccaaggactgaaagattgtaagaagtaagagtccatcatagaggccaagccaaatacaactatgttttcaagcataagatggatagatgtggtaaaccacaagaag
position 559
ggatggcggtgacgggcgcagggagcggggcccggctctccttgcctcgaggctcctctgattccactcgcgtggctgcgcggccctggcagcggccttcgtcccgggggtgggagctacacagggttccgccccgtcctggcgaggacgcctgagggggctctgtggtaaggctctgtcgggcaggccgggcttccgggaggacctggtctggatcggtcaccgctgggtgcctgagctccgcatggagcctgcagcctttgtttaacttataaagaaatgggggctccgagcagtcaagaagaacatgccccaagttattcgtcagtgaggcggaaattgtggtgtacttgttccagaccaactatgaagataggatgcccatccagaagaacgggaagcattttcttcctcacctttggaaagtaaaacaaaaaaaaaaagaaaaa
position 418
ggcagatggcatcggggacacagggaaacctgaccttagaggaaatggaaaagttggagagacactgagcactgatacgaaataattctcttgctgaaatacacgaaaggagtcccagcagccatattagtatttccacgtcctgtgtcagccccaagtagagagaacttggaatgggaggggaaatggcagccatcaggaaatgaaatgctggcccagagaattctaagcaagtcaatcaccagtccaaaggaaaggccatgtgaggacataaggaggagacagccatctataagccaagaagaaagccctcactagaaaccaactctaatggcaccctgatcttggatttctagcccctggacaatgagaaaataaatgtctgttgtttaaaaaaa
position 471
MA. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 ataattgctgccaaaatcatcacaagctgtacgtcatcaaggctccctttgcactcccaagaagaactgttcattttaaacaaaagtgatgagaattcctccagaggtgggaacagagaaaacttcatgcttggtaaagcacctgaggcacccattacaatctgggacaagatgaggacatcaacactcatgctgtattccacatgggaggccaagtcaacgcaagatgaaagagatataagagccaggcgcggtagctgacacctgtaatcccagcactttgggaagctgaggtgggaggctcacttgaggccaggagatcaagaccagcctaaccaacaaagcaagaccaagaccccttctcta...
position 58
human genes JOURNAL Genome Res. 16 (1), 55-65 (2006) PUBMED 16344560 gttggcctctgacccctcctcccgctgatgccaatgacaggaaaccagagactctctgcctcagagactacagggagagagggaggatgggcccaaggtgtattcctcttacgatgcccacccttaactcaccgtgcattgcctgagggccctgggctctcagtctgcattgattggagctgggaccgaagcccccattccagaaaccggaccaggagataggcaaacaagaagaagccacccaatgtgagaaagaaataagcaacgggggtgatgtccgtctttatgcccagcaaagccagccccagtaggaaggaggcgcagcacaggaggagaagcggcttctccagtctccccagttcttcaatctcaaataaatcatctgtagagtcccctccagttccgaaattctctctatgtcttggagtgtgtggaatagccaggaaaccagcccaggagctttgactcccagccattctgcaccttaagcaaaaaggaagttagccacacatggtggctcatgactgtagt...
position 228
tctgaaatgagagaaattgcagaaattctccctgctcaggaaaaggtagaggcaaggattgacttaaagatgggtaagaagcgtgttactgatcataagctaaatgtggacaaagtaattaaaaatattaacacaatttcttcggagttgaagaagataaaagatttgcatcacatgctgatgcttacagcagccacagctaaggggactgggactgccaagaccagtttggaccactcagaacttactacaggagctggggaaaggaacacctcaaacaaaatcaagctgtgactccaagaagaagagggcatggccgttcgttaggcaccaaataagctctcccagttattgctttgtgaccttatcctacattttaatcatcccatcaagactgagaacttagcagaagcagaaagaaacaaccccctctttgaagagtctaaaatatcagatgtatcccttgtttctaacagctatctgatttcttatttgttatgagtttctgttttattgttgaactaacaaatatttgggagagttgagtttactaatttgtatatatataatttaaaacaaaataaaaataatgtaaacaag...
position 336
cctagtgtgtctgaggaaatccaatctctcccactccagcccgcctactcattgaacatggctgctatctctgtcttctggaaacacggctccaatcctgcaacaactctatacaagagctcccagtggttcttaaccttggctgagcaacagacccatttgggaagaaaaaatctagcttatgagatacctcagatcaatcaatccctggcagtgggtctgctaaacatcagatacagacaaacaactgcatagatctccaactagattgaagaacaggaccctccagagagcttccaagaagacaccaacctaggcatgggtttatgttcctgacaaagaataaggattgttatgaagaatgttctattttgaattgtgaaaataattatttaaagctgtacaaaaaaaaaaaaaaa
position 443
aatggagtgagagagatcaatgctggacccaagatgattaacgtgccaacctggggcactggcgctagggagatggtcagatcgatggattccaagcaaatgaagagcctggcgcattcggcagccaagctgtgaagttaaacacagcgacggggccaggcgtttggtgagcgatgagggtgatgaaacaggacacatatatcttgggaaacaacactgagaggccagatctggttctgaaaaatgtctttgctccttgtcacctttcaaaggcaaaatcacagctctgacaaataccaagaagaattcccaggtgtgtctgcagccgtgaaaatgtgacatgagtcacagtgtcttcggaggaaatgaaagaccacaggacggggacatggcatcatgaaaaaagatgctttgtgattttcaacatatggtgacacttttcctaatttagagggggaagctgggttttgagttttcttttatcctccctctttgttaaaagcaagagaaagaagatttaaagaacatctgtgtattcaaatgatagaaatagaattatacactttcaaaaacaa
position 401
loci and evolution of casein gene family JOURNAL J Mammary Gland Biol Neoplasia 7 (3), 327-345 (2002) PUBMED 12751895 REMARK Review article attttccactgtgtagtccactggtcttctatttgggaaacaaggaccaaacaaccatgaagttcttcatctttacctgccttttggctgttgctctggcacatcatgagataaagcactcctcctcttccagtgagtaatctgccagcatctaccaagaagaaactgcaaataaaatagatacgatgcaatcttctagcagtttatccagtggggaatctgctcaagtatccactgaaaacaatgaactgactaaggaaggaaggatctacttaaagcacatggaatctaccagcatctcccaagaagaatctgctgaagtattccctgagacgaaaaccaaccagtttctccagaagttcactgtcccccagtatgtccaggctgttccccttgtagtctatgagcctgtggaatcacattcaggaaaacacctacccatatattcccatttagaaga...
position 156
PUBMED 11914277 REFERENCE 10 (bases 1 to 82) AUTHORS Lagos-Quintana,M., Rauhut,R., Lendeckel,W. and Tuschl,T. TITLE Identification of novel genes coding for small expressed RNAs JOURNAL Science 294 (5543), 853-858 (2001) PUBMED 11679670 gcagtcctctgttagttttgcatagttgcactacaagaagaatgtagttgtgcaaatctatgcaaaactgatggtggcctgc
position 34
Synonym: C13orf25; hsa-mir-19a; miR-19a; MIR17HG; MIRH1; MIRHG1; MIRN19A; miRNA19A
NR_029489.1 -
Homo sapiens (human) -
NCBI -
UCSC -
RefEx(expression)
gene="LINC02462" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1727308483" variation 639 /gene="LINC02462" /replace="c" /replace="t" /db_xref="dbSNP:1288517234" variation 640 /gene="LINC02462" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:116434665" ORIGIN // gggaaacaagaagaatcctagatgtctcaatgagatgaagaattgcctactgtttatcaccctgacccagtctttctccccaagacaagttctggaaactaaaagtccatgatcaaggcatcagcagatcaacgtctggtaagagtcagcttcctgatgagcagatgcctccctgacttaatctcacttgttggagagcaagaaaagaggatgttttcctgtcacttcctataagggtgctaatcacagtcatgtgagctccactcttatgacctaattatctcccaaaggctccatctcctaatatcatcatattgaagaa...
position 7
type 1 patients JOURNAL Genes Chromosomes Cancer 35 (2), 113-120 (2002) PUBMED 12203774 ttccatccggctatgacttccgcaagacaatccacttctttgcatttctgtctatctccctgaaagaagacattggtgattccccaggtctcctacaactctgaaattttgattccaggcaatccatggggcagacatccttatttgacagatagagaagatgtcatggccctgtaagtcaagagaacaggatggccaaaggcaagaagaaaaagacactggaaggggcccctttctccttcagagagcctcgttcttacacaagggccaagaaacaggacatctaaggacttggaagccccaggcacgtgacccccggcctctctgttctccagctaaggaacgctttatggccttcgcatttattcatgtatttcctggacctactttgtactaggccaagggaagtgagctgaataagacccagcggggttgagagacataaaaatggcttattgaaattcaatactccaagggctggaagagatggatgagtagcgagccggaggagc...
position 208
the phosphorylation of a subunit of NF-kappaB (P65) gggctccaagcagctgcgactagcggaaagcgcgcgccagctgcacgcagggaaacagttctcattttgtgtgctcggctgactgcacgtccagcctcgggccagctcgagacggccacattgcctggttgaagatggctgagcgtaaaacagaatgcaagtcagctggagcacgtactactggaggcagagccccatgagaaggggccaagaacccgcacccatcaaaatcaagaagaaaggctgaacccggagagaaaagggagcaactgatgttgccatgcagatcccttggttgctatgagatggtaacatcactctgccccaccattggccagtgcctcctcagctgcggtgcctcccaggctgtgtggttctcacgcgggccactgacacagagctgttactatggtgaactttacaatttcctttgattggtggatttcagaaataggccatcagcggaattcattatattcagctaacctggctcagcttctcagcttctcaggtggattggtgagtcctggccaattacgcttcagctc...
position 232
variation 652 /gene="BTBD9-AS1" /replace="a" /replace="t" /db_xref="dbSNP:923393222" ORIGIN // cctgcctccacactaccccctctcccctaatgaggctggcagcaccatttgctagcacctggcagatgagagagaaagaaaacctggtgtggagacccccatccattaaaggcaagagagtgaaaagtgggagagaaagctcccaagttcaacagcagtgacctagggtcatgcagtgaggacttacaaagtccaagaagaaagcatttggagaagtgctacacatgctcaactgaacttcctgtcaaattgttctcactcgtttgggcacaagtctgcttaagccatctctcattaacatttactcttgcccgaagccctctacgcccccaacccctgctaatcttccacaagcaagctgatcacactgggatctccttttcccagacacgtttgattctcactttctcctgaacctagaaatgtgcttcccaccaaagcatgccaggcactaactcgtccctactgaaaggggctgttaaaagctcatcttctttccagatgg...
position 194
Splign:2.1.0" exon 83..330 /gene="LOC101927823" /inference="alignment:Splign:2.1.0" regulatory 308..313 /regulatory_class="polyA_signal_sequence" /gene="LOC101927823" /note="hexamer: ATTAAA" polyA_site 330 /gene="LOC101927823" /note="major polyA site" ORIGIN // agacatcagaaatgtggttttgaatcacaagaagaaatcaagactaatagtggaaaagcctgaaatgtcttgcatagagctggactgtttgcagctcaggatgtttgccatcacaacggcagagccgcagttcacacccaggcacgttctccccaagacctgtggctgcaaccactgctatgcatggaatgtgagacggacggtgctcgcctagccaacagttgatgctgaatacatcttcatctgtgtattgaccatctacccttttcccatgatttgtttgtcaaaattccttgctaatttccttattaaaaatggtcagtattttaa
position 28
gcaaacgagtatatgacacatctgaatttgactgtggaactctgtatctatatacacttgcaattcttatcaagtaaaaatacatcaaagatatcaacaaccacagacgtatacacccgacaagaaccgctgtatattctagtacatcatttattggaccaacaaatacatggcatctggcaaggaattgaaaagtggcttgtctatctggaatacagggaggaaggagttgaaatgagatgggaagagtcatctgtatgcagaggaggtataaagtcatgcaaatggataagatttcaagaagaaagaagaaaaaggtaggctctgagtttggagagttgaatgagcctacagagataatgaagttgttgctggagagcctccataacttctgttgagaaatcggccttaatcttattgatgatgactttcacatgatcctcagatatctgcctctagatcccagatgagcaccagttgcagcagtcaaacgtcatctatctgtatatcaagataaattatgaaaggattatataccaactgtctaaatgacaaagagaagaaaggt
position 530
major polyA site" ORIGIN // agtcacacaagattgtcatgcgagctgaagggggctgaaattattccctctgaagaagaagaagaagaagaaaacatactgcagctcccgatttgaaacatcatatttgaaaacaaggtggggccttcatcatatgcaaccttcatattttagggcctgcctctttctattccttgacataaaccggactcttcatgctaatcaggctggaagtgtatcataaggatgctgaagctaaaaacaatgtccaaggccaaataactgacaagaagaaggccaaggcatctagaaaccatgtcttctgattcacagttgatcatactatcacctttgataaggcataaaatattattttgatgagtaaataaaaagactttggacacctgc
position 266
aggtagcacagagctgacaggcagcacgaatctgatcacacactacaacttggaacaagcctataataaattctgtgggaagaaggtgaaggagaagctaagtaacttcctgcctgacctgccagggatgattgatctgcctggttcccatgataacagcagcctccgctctctcattgagaagccccctattctcagtagctctttcaatcctatcacagggaccatgctggccggcttccgcctccacactggcccgttgccggagcagtgtcgtctgatgcatattcagcctcccaagaagaagaataagcacaagcacaaacagagccgtacccaggatcctgtccccccaggtaaacccagttaagttccgtatggagctctggactcctaaattcccctgaagaagaaaccaatgtactgtggtctcttgggacttgggacagggactctagcagcacctctgtatcctttctggccatttggacaaaagcagttgccccgacttgggattttcctgtagtcttcagtggttcataacagtagaggattttgagctttacaggtgataggtacctaatgtctcctacagaaaca...
position 549
agcagcaggcagacatctgaaccgtggtacatctagttcttctatttgtctacctataggtgcactcataacattttaatttatttcatgtgttgtcatcgttatcctctgtattactctgagaaagaagatgttacctgtttgtgaaaaagagggtcacagagtatgtgtgaaccaatacttcatttgagacagcctcacatggagaatgcaatgagccattctcttctcacatacagttgaatatgacatttactgcagtttgatcactaagcataagagccaagaactctggaacaagaagaagaagacgaaggaggaggaggagggggagggggaggaggagaaggagaaggaggagaaggagaaggagaaggagacggagaaggaggaagaggaggaggagggccgggcgcagtggctcacgcctgtaatcccagcattttgggaggccgaggcgggcggatcacgaggtcaagagaccgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcatggtggcgggcgtctgtagtcccagctactcgggaggctgaggcaggagaa...
position 509
ttggaaaaacagaagcaacgcagaggagatgggagtgaaccaagaacatagtaaccaccctgaacctcctcaacaaaccccagagggacatgtccccagaggagatgcagaagcacggggaggagggtccactctgtgctccgcagtcagtcaagaacaacactgaagtgctcaccaactactgacaacaacaagctgctgggctgcgaaggccttgagtagacactgcaacatggtgctggagaatgtgaaggagatgtgtactgaggtccccaaggggggcaacggtggcaagggcaagaagaagtccaagccagccaacaaagaccacttcatctccaagctcttcctgtgcagggactcagtcatcaccaacaagtgggggccacctccccattgacagaactcactccctcatcctatgaagacctaccctttgttatggggataataaagccctgtgcctagtagtaaaaacaaaacataacaacaacaataaaactttagtcatttggtcatattagggaagtcatttattattctgtttcttcagaaataaaaaacagataacaaaaaaaaaaaaaaaaa
position 476
ctgggggacccaaacgctgtgctcgccgggcacatggagcgacagcctagaccgagctgccgcttcgatcactgccccctgcacccgccgtggccatcccggagccccggtggaagcaacgccgcggaaacatcatatttgaaaacaaggtggggccttcatcatatgcaaccttcatattttagggcctgcctctttctattccttgacataaaccggactcttcatgctaatcaggctggaagtgtatcataaggatgctgaagctaaaaacaatgtccaaggccaaataactgacaagaagaaggccaaggcatctagaaaccatgtcttctgattcacagttgatcatactatcacctttgataaggcataaaatattattttgatgagtaaataaaaagactttggacacctgc
position 313
attcagaagactgaagcccaggcttactgtctacctttcacggaggcctagccgtgagaggacagaagaaggcatgtggcgaatcatgacagcagacaaagacaaagagaaggaccgggactgagactgggactgagagagagagaaaagagacaaagcaagagagagtgagaattcaaggccacgccggagctgtaccttggaaggaggagccaaaaattatgctgagagtgatcacagtgaagacgaggacaatgacaacaatagtgccaccacagaggagtccacgaagaagaacaagaagaaaccaccgaagaaaacgtctcgttatgaaaggacagataccggcgagataacatcctacatcactgaagatgatgttgtctacagaccaggagactgtgtgtatatcgagagttggaggccaaacacactgtatttcatctgtagcattcaagacttcaaactggtaagcatttt
position 622
cctagccttagctaggctaagagcctagcttctggcctggcttttacgtggtcagcggatgtgcgtccatccccctgcactggttccccttgtcctttctgtggctctcctggattcctctcgttcagctccttggtgtacagagcctatgtcaatggcaatggtgagggaaattgccagagccctgccctccaggcctgtccttattcatggggatctgagaagaagagattaggacccagacatgcacagaggagaccctgtaaggacacaaagagaagacagccatctgcaagccaagaagaaaggccttgggggaaaccagccctgcccacaccttggtctggacttccagctgattcttggatgagctggtccttaggcacggaggcaggactgtgagaaaataaatttctgaattca
position 828
B, Zhang J, Hao C, Tian X, Li W, Xu N, Lu Y and Liu S. TITLE MFAP3L activation promotes colorectal cancer cell invasion and metastasis JOURNAL Biochim Biophys Acta 1842 (9), 1423-1432 (2014) PUBMED 24735981 actgtgaggcctctcacggtgggacccaggctttgggtagctggctccatgctctagcaaagcctcacttagcagtggggaggtcccaagaagagaagcgagatacccatataaagcaagcctgcttagccttccagggtccttcaaatcttaccaaatgaaagccagcttgctccacctactgtcaagccagcatctcattctccccattcttgtctcttaaacaactactcaaaaaaggagagccatgaaagtcaccagcctagaaaattacagtcgacttcatgagcttcatttggatttctcatcatgcaatagcaaagtcacagttattcctactgagatcacaatgatgctgccagagcctcccctgagcttgagagccctcctctt...
position 476
tgcccaaggtctcaccaggcaagagaagggcggagaagggcggcttcttcatggattgtaaatccccaaagcgtgcaaacatctgcccccatctccctggaggtggcctgttctccacgccaccctcacaggctgcctggcggactctcctcacagcactgtgcttcccggggcccacttgtacaggccccatgcgagaaggacctcgggcagtgtataatcctccaagggcccacaggaacagcagtgacaactgtgttatgaagcacctactatgtgctggggacaagaatggaacaagaagacatgctttgccctcacccctggagggcagcttccagccagggaggcaaatacctcctccccagactccttccacagatccccaaactctgcctctctccttcagatccctgctcagatgtcaccagctctgtgcagcctccctgccaccaagtctaaaattgccatagtcccctcagttcctcacccctctccctgctttctttgtctgtctcatccatgaggatgtgccctctgggaagggcaggcaggagctggctattctgttccttgccctgtccccagcaccgaggacag...
position 480
attttaataacaaatgagaatatgatgtgacatccgttccaaatcctgtcgttccaagtaacttcttaagcatctttcacgatacagcctctgcttgaaaggaattaaaacaggtacaagcatggaaggagacgttgctatcatatttcaagaataagaaaatgctgttttgtgtggttgtgcagcaggcaatgaaatgagcttacattcaagcttccgtgttttactgaaacaacagtcacagatgcagtagatgttaaaggttgaaagacgagtgcagtaaaagcattatgaggacaagaagaaaacgtaaatatttgtgttgtttcattctttgttgtggtggcagaaacagccccctctttctaaggtaactccaatataatgatctctcccagctttgaaatactccatgtctgtttcattttccagaaatatggaaaaatgaatatataataaaaaaccctatttctcatttaaaaaaaaaaaa
position 815
Online-Only REFERENCE 4 (bases 1 to 177) AUTHORS Kiss AM, Jady BE, Bertrand E and Kiss T. TITLE Human box H/ACA pseudouridylation guide RNA machinery JOURNAL Mol Cell Biol 24 (13), 5797-5807 (2004) PUBMED 15199136 ccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttgggcaataatgctagcagagtacacacaagaagaaaagtaacagcactagattgtaaagactggggtggacctctttcttaatgtccaatgtcctttgtcttaagatttggtgcaatatct
position 83
agcttagaagagattgagagcattgaccaggaaataaagatcctgagagaaagagactcttcaagagaggcatcaacttctaattcatctcgccaggagaggcctccagtgaaacccttcattctcactcggaacatggcccaagtcaaagtatttggagctggttatccaagtctggcaactatgacggtgagtgactggtataagcaacattggaaatatggagcattaccagatcagggaatagccaaggcaacaccagaggaattcagaaaagcagctcagcaacaggaaggtcaagaagaaaaggaggaagaggatgatgaacaaacactctacagagttcgggagtgggatgactggaagggcatccatcctagggactatggcagccaacagagcatgggctgatcttcccacaaatgagaggactgaagggtgcacacctcccacgccaaggaaaaccatgcagtcctcatctccctgggcttccgcttcagctgtgtacaacgaaggcaaagatgctaaatcttgctttgctttcaataaagtgtccagtgattaaaaaaaat
position 301
ggacagtctttaggccatgttggaactacatttggaaaggtggttgttaaacatttcccagcacacacctggatctgcatctgctgtgtcaattgaaccactcactggttctgtgacctcagttcttcgtagactctggaatggagctggaagctgtcatcctcagcacactaacgcaggaacagaaaaccaagcactgcatgttcccacttataagtgagagctgaacgagcagaacacatggacatatgaaggggaacaacacactctggggcctgtgaggtgcagggagagcatcaagaagaacagctaatgggtgctgggcttaatacctgggtgatgggttgatctgtgcggcaaaccaccatggcacacatttacctatgtaacaaaccttgacatcctgcacatgtaccccggaacttaaaaataaaagttgacaaaaagaaaa
position 376
sequence" /gene="LINC02756" /note="hexamer: ATTAAA" regulatory 597..602 /regulatory_class="polyA_signal_sequence" /gene="LINC02756" /note="hexamer: AATAAA" polyA_site 609 /gene="LINC02756" /note="major polyA site" polyA_site 619 /gene="LINC02756" /note="major polyA site" ORIGIN // aaagttacacaagaagaattggcccttgaccagcctgattggttgcaggaggggaccaatcagaggtacctcccacatctgcagcccaatgcaaagtaatgacatggatctggagagattctcttaggagagaatctggctaagtgtctagcaggatgattgattaacaagatgttttgttttcatcatctcagagataactgtattgaggtataattgatatgccaaataactggacacattcaacttgtgcaatttgatgagtttggagatacacatacatctgtgaaaccatcaccaaaatcaagaacaactttc...
position 10
ggagaactttccagccatgttggaactacatttggaaaggtggttgttaaacatttcccagcacacacctggatctgcatctgctgtgtcaattgaaccactcactggttctgtgacctcagttcttcgtagactctggaatggagctggaagctgtcatcctcagcacactaacgcaggaacagaaaaccaagcactgcatgttcccacttataagtgagagctgaacgagcagaacacatggacatatgaaggggaacaacacactctggggcctgtgaggtgcagggagagcatcaagaagaacagctaatgggtgctgggcttaatacctgggtgatgggttgatctgtgcggcaaaccaccatggcacacatttacctatgtaacaaaccttgacatcctgcacatgtaccccggaacttaaaaataaaagttgacaaaaagaaaa
position 455
LOC100507464" /replace="a" /replace="g" /db_xref="dbSNP:1309090139" variation 266 /gene="LOC100507464" /replace="g" /replace="t" /db_xref="dbSNP:1806350489" variation 267 /gene="LOC100507464" /replace="a" /replace="g" /db_xref="dbSNP:1806350471" ORIGIN // gagatcaaggaagaggaacacgataaaatgcttatggctccaagaagaaatagggtgagagataggaccacaaattgtttactcatttcaaccagtaaacatgtcctgcaatgtcaatctgtctttctgccacagcagttctgcgcctcctgagttgtttccatctccctccagtcattcaggaccaccaatgagatttgtgatatttggaaaactgccacccagtgcctccttttcctaatctgctgaataaagttaataagactaaaaa
position 41
atacagtgtttctgcctatttgattaacgatgactatgaaagcacaaatttgggggcctgcaatgtatacagccatattggaaaaaattggactcgattcttactgaaataaccagtgttgggctgtgaaggtactgtgggaaatgctttggaaggtgcctttaaaagaatctcaaaatattgctttcctttccttgagcgagaccgaaaaactttagaaaaagaaaagctcatacctagaacaaaggaccacgctgaatgcatattctagagcacatttcacatccctcgcgtcaacaagaagaagaagaggagctttgatgcatttcagtctacaagttgacatcacaaaagtgctggaagcagccgtggtttcggaagggagctagaggcagaacgagtgtggatgctgagagatccctgactgtgactgctacatatttcagctgcgtagtcacatatatacaagattccctgcacttacaaccaaaatgataacaaatgctctcatttgggattttgtttgatagtcattaggatattttataagtctttccaagcacaaggcaaagagaaatgtgacaaataaggcaacatatt...
position 612
aggaaccatgaacgaccaaaatcaagtgagtaggtgaccagttcccattagtaattaggaaatagcaaattaagaccacaaagagggcagtgagggtggctcacacacctctaatctcagcgcttgggagtccagggccagaggatcccttgaggccaggaggtggagtctagcctgggaaacatagcaagaccctgtctctacaaaaaaataaataaataaaataagaaaaaagtaaaccacaaggagatgacttaccaccaggcaaaaatattaaagtatgctaataccaagtatcaagaagaatgaagcaagatagctcaaatatgcttttgaaggaaatatactgggcttcattcattctgaaataccccttatttaagatactctattatattaaatacagttccaaaacaaaagaaatcaaagaacaaaaaactaacccaatacttttatcacttgtaatttgtatattacacatattgaaagatatattttagacttattagagaacgaaattggatatcactcttgtgcatacaaaataaaataaaattgattaaggtgtttctaaca
position 865
variation 274 /gene="LOC102725254" /replace="a" /replace="t" /db_xref="dbSNP:1223163393" variation 276 /gene="LOC102725254" /replace="c" /replace="t" /db_xref="dbSNP:946833043" ORIGIN // ggtcaagagagcctcccctccccaccattcccagaaaaggaggaaggggctgatggactctctgggaaccccctcccctccctgcgccccgtcatcaagaagaaaattcgaagaaaaggtttagcagggacagagaagcgacctgtcccggaaaccccttaaagcctgcgggtaacatgtttgctccctcctcccccactcggactatagaagtatcaccaatccactgcagagaaattgggaaaattcagaaaaacaaaaaataaaaagaaatccac
position 96
gagctccatgcaaaacttaaacacttgcaggatgacaataatctgttaaaacagcaacttaaagatttccagaatcaccttaaccatgtggttgatggtttggttcgtccagaagaagtggcagctcgtgtggatgagctaagaagaaaactgaaattaggaactggggaaatgaacatccatagtccttcagatgtcttagggaaaagtcttgctgatttacagaaacaattcagtgaaattcttgcacgctccaagtgggaaagagatgaagcacaagttagagagagaaaactccaagaagaaatggctctgcagcaagagaaactggcaactggacaagaagagttcaggcaggcctgtgagagagccctggaagcaagaatgaattttgataagaggcaacatgaagcaagaatccagcaaatggagaatgaaattcactatttgcaagaaaatctaaaaagtatggaggaaatccaaggccttacagatctccaacttcaggaagctgatgaagagaaggagagaattctggcccaactccgagagttagagaaaaagaagaaacttgaagatgccaaatctcaggagcaaggg...
position 1137
sequence" /gene="LINC02756" /note="hexamer: ATTAAA" regulatory 672..677 /regulatory_class="polyA_signal_sequence" /gene="LINC02756" /note="hexamer: AATAAA" polyA_site 684 /gene="LINC02756" /note="major polyA site" polyA_site 694 /gene="LINC02756" /note="major polyA site" ORIGIN // aaagttacacaagaagaattggcccttgaccagcctgattggttgcaggaggggaccaatcagaggtacctcccacatctgcagcccaatgcaaagtaatgacatggatctggagagattctcttaggagagaatctggctaagtgtctagcaggatgattgattaacaagatgttttgttttcatcatctcagagataactgtattgaggtataattgatatgccaaataactggacacattcaacttgtgcaatttgatgagtttggagatacacatacatctgtgaaaccatcaccaaaatcaagagaaagtgga...
position 10
KS, Noh SM, Kim S, Yoo HS, Kim YS and Kim NS. TITLE Transcriptome analysis of human gastric cancer JOURNAL Mamm Genome 16 (12), 942-954 (2005) PUBMED 16341674 ggactgcgccgaacgccagcagcagggtcagaagggaggtagtcgccctccgtcgtggcctggcgtggattccgagcgttggtgtctggcggtttccgaccgttggtgtctggcacgcgccaccccgatgtaccagacaagaagacaagaaaatgatttgaggacagcttcaatcgcggtgtgaagaagaaagcaacaaaacgaccactgaaaacaatgccggtggcaaaacatccaaagaaagggtcccaagtggtacatcgtcatagctggaaacagtcagagccaccagccaatgatcttttcaatgctgcgaaagctgccaaaagtgacatgcaggatttctgacaggactctgggcccctccccagctccactccctacctcaagaatgtgaccatttggaaaaggcaaagagaaaaggagcaaaatgaagcattc...
position 144
agccccagctgactgagacacctggttagaccggaataagcaggctgcaatcggtagcagtcaccattgaacatccttgaagcaattcttccaaaattaccttgcatcaaagactgcacaagaactgctctaagcggaaggactgatgtcggcaaccagggttccaccaggggctgcagacagcccttgaccttcagaagtaaccaaatttactcacgtaggccaggaatttctatgacgtgttccaaattcagcctctcactgaacacttccagagcaaggcaacataaacatctgcaagaagaacattgtgtgagaaatatcaagtgagagtggaagagtctgcggagggcctccctggggctcacctgtgcttttgcctgagcttcaccgtgtcaaggatgcagcacccctctggaggaagcagctttcaccttggaagaatcttgaccttgccattcaaagtcaccagacagggaatctgccagtgccttgatcttagacttcccagcttctgtaactgtgagcaataaatgtatgctgcttataaacta
position 476
aacactcttagcaccctacaagcaggtatgtgcttaccagcaaactaaagcaaatggaaattaagaagcatgatcaccaccagcaaggtgctgctgaactataagccttcagatggtcagataaagtacctgatgctgaaaaacaggaaattgaatcatgtctccaaaatgtgccttttgtcatgcactgttacagctatatttcttgctctttaggccttaatgattgacatgatcttggaaaacaggtatgtagcaaaactctcctagaaacctgaaagatgtggcaagaagaaaacatggagccttttctgaacaagcctatgagagaagaagaatcacttcaatttattaagtgtggattctggggctaaagaacttacctacaaccacacagccagcaaattactgacccagcatattctgaacccaggtctttattctttccaaaacttcacagcaccttcctcagagcatctctacatgaaaatctgtataaagaagtgatctgtggtgtcgccatttgtatcaaaatggtatcacaaacttatttaaaaggcttcatctaaaagtcttcagagttttggccagggaagagct...
position 288
db_xref="GeneID:123706536" /db_xref="HGNC:HGNC:40563" ORIGIN // ctggatgctctggttttctcccacccctcaaagaggtgcatgttcagttcaccggcatgtctacatggtcctggtgtgagtgtggggtgtgtgtgagtgtgccctgcgatgtgacagtgtcctgttcagggctggttcttactttaagccctgagctgctggaatgagctacagcaaccggagactggagactccggcaacctagagaactgttattattgacgtcagcccaagaagaatgcaatgtccaggaagctaccaaaggaataaaactacatgagcacatacttctcttccaattcaagagtggcccgccttatcccttcacaggctgacttcccatcttactgtggcagcctctgctgctgttacctgcttgaggctttcttattgtgggcctcccactcgtgtttccgattgaggaagccttccatctgggccgaaggtgtctcctgggttctggctgggacagcggagaggccattcagctaactccgtgagccatgggggtgaccacatacgctctacctgactcg...
position 231
ctccccctggaggcggcagcgcccgtttatttgagccgtgtgaagatgtgcctgcttcgccttccatcatgactgaagtttcctgaggcctccccagctatgctccctatacagcctgcagaacggtcggctgcctccaatcctgaggtcatcactcatcaagaggggataatcccagggacagcaggatctgcttcgttacttggatttaggagccagaaacccatcaggcaactaaacagtaacaatgacccgccattaaacacactgagagaagagcatgatgaagagtttgtacaagaagaagccaggagcacttgctgacaatgcttacagagacgcaggcttctatgagctctgcctgttgaactgcagtaaaaatagatctccttccccagagaggcttggatgtgggcacaatatcagttcagacgatggtcaatgcatgtacttaatagagtgaaaagactttggactgtgaagtcagattacctgggtctgaattgttattcttctacttctttgtagtatgctttcaccacattaaaaattgtctgagcctcaa
position 419
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0.000 | 0.000 | search_start;
0.207 | 0.207 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caagaag)?source=Homo sapiens (human)?to=0&format=json
0.354 | 0.147 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:caagaag)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.359 | 0.005 | cgi_end;
GGRNA ver.2 by
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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