ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2024-04-29 00:09:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_046390 408 bp RNA linear PRI 04-SEP-2020
DEFINITION Homo sapiens NAALADL2 antisense RNA 3 (NAALADL2-AS3), long
non-coding RNA.
ACCESSION NR_046390
VERSION NR_046390.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC112510.9.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns SAMEA1968968,
SAMEA2148874 [ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-62 AC112510.9 21995-22056
63-110 AC112510.9 24646-24693
111-248 AC112510.9 56035-56172
249-408 AC112510.9 57766-57925
FEATURES Location/Qualifiers
source 1..408
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="3"
/map="3q26.31"
gene 1..408
/gene="NAALADL2-AS3"
/note="NAALADL2 antisense RNA 3"
/db_xref="GeneID:100862679"
/db_xref="HGNC:HGNC:41014"
ncRNA 1..408
/ncRNA_class="lncRNA"
/gene="NAALADL2-AS3"
/product="NAALADL2 antisense RNA 3"
/db_xref="GeneID:100862679"
/db_xref="HGNC:HGNC:41014"
exon 1..62
/gene="NAALADL2-AS3"
/inference="alignment:Splign:2.1.0"
variation 4
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:553255600"
variation 8
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:924732439"
variation 9
/gene="NAALADL2-AS3"
/replace=""
/replace="a"
/db_xref="dbSNP:1724910896"
variation 12
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:747596771"
variation 14
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:950208302"
variation 19
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1472693212"
variation 23
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1724904160"
variation 35
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1724903675"
variation 41
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1580526687"
variation 44
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1580526660"
variation 45
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1286425320"
variation 46
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1160689464"
variation 47
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:919480960"
variation 48
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1724901210"
variation 50
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1239102814"
variation 53
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1375376308"
variation 54
/gene="NAALADL2-AS3"
/replace="g"
/replace="t"
/db_xref="dbSNP:1465538058"
variation 55
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1724899084"
variation 56
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1303342409"
variation 57
/gene="NAALADL2-AS3"
/replace="g"
/replace="t"
/db_xref="dbSNP:1724898134"
variation 58
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1724897654"
variation 59
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:2108519915"
variation 62
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1351824981"
exon 63..110
/gene="NAALADL2-AS3"
/inference="alignment:Splign:2.1.0"
variation 65
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:550233860"
variation 69
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1380843527"
variation 75
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1724384736"
variation 79
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1724384208"
variation 80
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1724383762"
variation 82
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1724383326"
variation 88
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1724382863"
variation 94
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:9814132"
variation 96
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1344652750"
variation 97
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:898152650"
variation 98
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:139829940"
variation 100
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1580511871"
variation 101
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1198038845"
variation 102
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:940274922"
variation 106
/gene="NAALADL2-AS3"
/replace="g"
/replace="t"
/db_xref="dbSNP:1459431835"
variation 108
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1393089079"
exon 111..248
/gene="NAALADL2-AS3"
/inference="alignment:Splign:2.1.0"
variation 113..114
/gene="NAALADL2-AS3"
/replace="a"
/replace="aa"
/db_xref="dbSNP:1267731194"
variation 114
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:2109240432"
variation 124
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:953508630"
variation 125
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1459921379"
variation 128
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717741452"
variation 130
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1485190124"
variation 131
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1187959018"
variation 134
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1248728648"
variation 136
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1028960729"
variation 138
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:994844814"
variation 140
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1451498845"
variation 143
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1559999928"
variation 148
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1181974330"
variation 150
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717736391"
variation 151
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1369516944"
variation 152
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:962610290"
variation 154
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1717734798"
variation 155
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717734250"
variation 156
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717733787"
variation 158
/gene="NAALADL2-AS3"
/replace="g"
/replace="t"
/db_xref="dbSNP:1717733306"
variation 163
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:2109240041"
variation 168
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717732760"
variation 171
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1187333274"
variation 173
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717731290"
variation 176
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1717730725"
variation 177
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717729912"
variation 178
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1016898054"
variation 181
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1474418873"
variation 183
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:146685549"
variation 184
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1343325381"
variation 188
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717725915"
variation 191
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:547848149"
variation 193
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1452977595"
variation 194
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:866455010"
variation 198
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1366719671"
variation 207
/gene="NAALADL2-AS3"
/replace="a"
/replace="t"
/db_xref="dbSNP:1449914223"
variation 209
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:184152277"
variation 210
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717721391"
variation 211
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717720634"
variation 216
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1003679221"
variation 217
/gene="NAALADL2-AS3"
/replace="g"
/replace="t"
/db_xref="dbSNP:1580340370"
variation 218..221
/gene="NAALADL2-AS3"
/replace="ct"
/replace="ctct"
/db_xref="dbSNP:1229201817"
variation 218
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:2109239534"
variation 223
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1717717303"
variation 224
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1717716591"
variation 226
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1717715815"
variation 227
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717714963"
variation 228
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1488373947"
variation 229
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:756609928"
variation 232
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717713354"
variation 236
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:995234189"
variation 237
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717711885"
variation 240
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717711090"
variation 242
/gene="NAALADL2-AS3"
/replace="g"
/replace="t"
/db_xref="dbSNP:1717710311"
variation 245
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1208664109"
exon 249..408
/gene="NAALADL2-AS3"
/inference="alignment:Splign:2.1.0"
variation 252
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717309582"
variation 253
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717309033"
variation 255
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1250273954"
variation 256
/gene="NAALADL2-AS3"
/replace="a"
/replace="t"
/db_xref="dbSNP:1717307958"
variation 259..270
/gene="NAALADL2-AS3"
/replace="caacaacaa"
/replace="caacaacaacaa"
/db_xref="dbSNP:1486712974"
variation 259
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:555264853"
variation 261
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1580331416"
variation 265
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1717306214"
variation 266
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1242956463"
variation 268
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1717305166"
variation 269..274
/gene="NAALADL2-AS3"
/replace="aaaaaa"
/replace="aaaaaaa"
/db_xref="dbSNP:1179928755"
variation 271
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717304091"
variation 273
/gene="NAALADL2-AS3"
/replace="a"
/replace="t"
/db_xref="dbSNP:1717303632"
variation 276
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1175798069"
variation 277
/gene="NAALADL2-AS3"
/replace="a"
/replace="t"
/db_xref="dbSNP:1676738577"
variation 284
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717302249"
variation 285
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:890524060"
variation 287
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1475501996"
variation 289
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717300309"
variation 296
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:901654042"
variation 303
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:996314119"
variation 304
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1456285735"
variation 305
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1038889469"
variation 307
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1257374539"
variation 309
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1346620978"
variation 312
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717293811"
variation 316
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1211053909"
variation 318
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:2109222491"
variation 324
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:541806108"
variation 326
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:17355485"
variation 327
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1355319502"
variation 329
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:575241375"
variation 332
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1295729262"
variation 337
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1043368589"
variation 339
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717287563"
variation 342
/gene="NAALADL2-AS3"
/replace="c"
/replace="g"
/db_xref="dbSNP:1223342888"
variation 344
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717286538"
variation 347
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717285886"
variation 348
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717285368"
variation 351
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717284864"
variation 352
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717284125"
variation 355
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1285162037"
variation 359
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1318958406"
variation 360
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1717282060"
variation 362..366
/gene="NAALADL2-AS3"
/replace="aca"
/replace="acaca"
/db_xref="dbSNP:1279321830"
variation 362
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717281418"
variation 365
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:116851834"
variation 368..370
/gene="NAALADL2-AS3"
/replace="tt"
/replace="ttt"
/db_xref="dbSNP:1717278407"
variation 369
/gene="NAALADL2-AS3"
/replace="a"
/replace="t"
/db_xref="dbSNP:919506197"
variation 371
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:1717277863"
variation 376
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717277212"
variation 379
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717276638"
variation 393
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:893492067"
variation 394..396
/gene="NAALADL2-AS3"
/replace="t"
/replace="ttt"
/db_xref="dbSNP:1249588134"
variation 399..400
/gene="NAALADL2-AS3"
/replace=""
/replace="gt"
/db_xref="dbSNP:1717274048"
variation 401
/gene="NAALADL2-AS3"
/replace="a"
/replace="c"
/db_xref="dbSNP:982069313"
variation 402
/gene="NAALADL2-AS3"
/replace="c"
/replace="t"
/db_xref="dbSNP:1717272721"
variation 403
/gene="NAALADL2-AS3"
/replace="a"
/replace="g"
/db_xref="dbSNP:1717272190"
variation 405
/gene="NAALADL2-AS3"
/replace="a"
/replace="t"
/db_xref="dbSNP:1717271665"
ORIGIN
cctatgacagacaaggcaagctctactctcagaagcaaaaattatatatctaggagtcagagtatgaatcaagaagaatggacttctgcttcttatctacctaatgccagataatgatgacagcaatgcattttctacattcatatcctcaatcatatgtttttgaatgcttactggaaaaccggtttaaaagaaaggtgactagttattggtcttgctctgacagccgtggaaaccatttgctgatgaaagcacaagcaacaacaacaaaaaagatgaataaactggatttcaacaaaaacacatttgtgcttcagagaacataatcaagaaagtgaaaaggcaacccaccaatgggagaacacagtttcaaaacatatatctaataaaatatttgagtccagatta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]