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Previous release (v1)
2024-04-29 00:36:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_146511 406 bp RNA linear PRI 06-SEP-2020
DEFINITION Homo sapiens long intergenic non-protein coding RNA 1905
(LINC01905), transcript variant 2, long non-coding RNA.
ACCESSION NR_146511
VERSION NR_146511.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC009271.7 and AC006305.3.
Transcript Variant: This variant (2) lacks an alternate exon
compared to variant 1.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
##Evidence-Data-START##
Transcript exon combination :: T66870.1, AA706933.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA2149398 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-67 AC009271.7 118519-118585
68-165 AC009271.7 126321-126418
166-406 AC006305.3 52095-52335
FEATURES Location/Qualifiers
source 1..406
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="18"
/map="18q21.2"
gene 1..406
/gene="LINC01905"
/note="long intergenic non-protein coding RNA 1905"
/db_xref="GeneID:102724698"
/db_xref="HGNC:HGNC:52724"
ncRNA 1..406
/ncRNA_class="lncRNA"
/gene="LINC01905"
/product="long intergenic non-protein coding RNA 1905,
transcript variant 2"
/db_xref="GeneID:102724698"
/db_xref="HGNC:HGNC:52724"
exon 1..67
/gene="LINC01905"
/inference="alignment:Splign:2.1.0"
variation 1
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1251213768"
variation 2
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:931228068"
variation 6
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:879494889"
variation 8
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1313288907"
variation 9
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:145276007"
variation 15
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:188156092"
variation 16
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:2016042332"
variation 18
/gene="LINC01905"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:992266422"
variation 19
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016042425"
variation 22
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016042477"
variation 24
/gene="LINC01905"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1008101296"
variation 25
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:574500107"
variation 27
/gene="LINC01905"
/replace="a"
/replace="c"
/db_xref="dbSNP:1167435126"
variation 29
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1041509165"
variation 30..31
/gene="LINC01905"
/replace="c"
/replace="cc"
/db_xref="dbSNP:1425173917"
variation 31
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1038099953"
variation 32
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1161372734"
variation 35
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016042759"
variation 44
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1844685536"
variation 52
/gene="LINC01905"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1443838597"
variation 54
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:760203998"
variation 55
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1233661072"
variation 61
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1184298928"
variation 62
/gene="LINC01905"
/replace="a"
/replace="c"
/db_xref="dbSNP:2016042938"
variation 66
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1401962995"
variation 67
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016043006"
exon 68..165
/gene="LINC01905"
/inference="alignment:Splign:2.1.0"
variation 68
/gene="LINC01905"
/replace="g"
/replace="t"
/db_xref="dbSNP:2016128304"
variation 72
/gene="LINC01905"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1488435360"
variation 77
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1368239743"
variation 79
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1213103940"
variation 92
/gene="LINC01905"
/replace="a"
/replace="c"
/db_xref="dbSNP:1026880913"
variation 95
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016128437"
variation 96
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016128454"
variation 102
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016128480"
variation 105
/gene="LINC01905"
/replace="a"
/replace="c"
/db_xref="dbSNP:952635131"
variation 111
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016128537"
variation 113..133
/gene="LINC01905"
/replace="gatggcctgtcactctgatgc"
/replace="gatggcctgtcactctgatgcgatggcctgtcactctgatgc"
/db_xref="dbSNP:2016128572"
variation 121
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1279196746"
variation 122..127
/gene="LINC01905"
/replace="tc"
/replace="tcactc"
/db_xref="dbSNP:2016128660"
variation 122
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016128631"
variation 124
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:982546609"
variation 125
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016128683"
variation 133
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1225297506"
variation 134..141
/gene="LINC01905"
/replace="ctctct"
/replace="ctctctct"
/db_xref="dbSNP:2016128742"
variation 140
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016128771"
variation 149
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1343388727"
variation 161
/gene="LINC01905"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1416061461"
variation 164
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016128877"
variation 165
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:1400838751"
exon 166..406
/gene="LINC01905"
/inference="alignment:Splign:2.1.0"
variation 166
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:2016731988"
variation 168
/gene="LINC01905"
/replace=""
/replace="g"
/db_xref="dbSNP:1599019240"
variation 170
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2144400765"
variation 176
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1334892115"
variation 177
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016732107"
variation 184
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:959374327"
variation 188
/gene="LINC01905"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1443900694"
variation 193
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1181578946"
variation 194
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1035693450"
variation 195
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:2016732337"
variation 196
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1392526532"
variation 206
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1325373743"
variation 210
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016732453"
variation 221
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016732498"
variation 223
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:370036480"
variation 224
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1049599717"
variation 230
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:918011896"
variation 231
/gene="LINC01905"
/replace="a"
/replace="c"
/db_xref="dbSNP:889714940"
variation 237
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1469964473"
variation 240
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016732703"
variation 241
/gene="LINC01905"
/replace="g"
/replace="t"
/db_xref="dbSNP:2016732740"
variation 253
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:1000415379"
variation 254
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016732821"
variation 256
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016732854"
variation 263
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1195865122"
variation 267
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1054279393"
variation 271
/gene="LINC01905"
/replace="g"
/replace="t"
/db_xref="dbSNP:1469577990"
variation 273..274
/gene="LINC01905"
/replace="gt"
/replace="gtgt"
/db_xref="dbSNP:1250742813"
variation 273
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:891652375"
variation 276
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016733065"
variation 277
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1010313801"
variation 283
/gene="LINC01905"
/replace="a"
/replace="t"
/db_xref="dbSNP:2016733139"
variation 284
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016733190"
variation 291
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016733228"
variation 297
/gene="LINC01905"
/replace="a"
/replace="t"
/db_xref="dbSNP:2144400889"
variation 298
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016733261"
variation 307
/gene="LINC01905"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1024436517"
variation 308
/gene="LINC01905"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:375842069"
variation 309
/gene="LINC01905"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:2016733393"
variation 310
/gene="LINC01905"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:971217908"
variation 311
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1894151"
variation 312
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016733592"
variation 314
/gene="LINC01905"
/replace="g"
/replace="t"
/db_xref="dbSNP:1349831789"
variation 315
/gene="LINC01905"
/replace="a"
/replace="t"
/db_xref="dbSNP:1275273158"
variation 319
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1338745364"
variation 321
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:1001543511"
variation 323
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1302864899"
variation 324
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1034570679"
variation 334
/gene="LINC01905"
/replace="a"
/replace="c"
/db_xref="dbSNP:2016733862"
variation 335
/gene="LINC01905"
/replace=""
/replace="a"
/db_xref="dbSNP:2016733901"
variation 336
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1568617473"
variation 339
/gene="LINC01905"
/replace="a"
/replace="t"
/db_xref="dbSNP:1048318346"
variation 341
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016733986"
variation 344
/gene="LINC01905"
/replace="a"
/replace="c"
/db_xref="dbSNP:952348345"
variation 349
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016734079"
variation 352
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:1313456107"
variation 354
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016734156"
variation 357
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016734182"
variation 359
/gene="LINC01905"
/replace="a"
/replace="t"
/db_xref="dbSNP:985469423"
variation 362
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1403511537"
variation 364..366
/gene="LINC01905"
/replace="aaa"
/replace="aaaa"
/db_xref="dbSNP:36101153"
variation 367
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:2016734338"
variation 368
/gene="LINC01905"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:59143561"
variation 369
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:2016734457"
variation 370
/gene="LINC01905"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:2016734502"
variation 374
/gene="LINC01905"
/replace="c"
/replace="t"
/db_xref="dbSNP:1041103545"
variation 375
/gene="LINC01905"
/replace="c"
/replace="g"
/db_xref="dbSNP:962554272"
variation 378
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:972452447"
variation 384
/gene="LINC01905"
/replace="g"
/replace="t"
/db_xref="dbSNP:1305362964"
variation 391..397
/gene="LINC01905"
/replace="ttttttt"
/replace="tttttttt"
/db_xref="dbSNP:2016734807"
variation 397
/gene="LINC01905"
/replace="a"
/replace="t"
/db_xref="dbSNP:922356882"
variation 398
/gene="LINC01905"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:933630941"
variation 406
/gene="LINC01905"
/replace="a"
/replace="g"
/db_xref="dbSNP:141259871"
ORIGIN
tgatgcagcaagaaggcccttgccagatgccagcaacttgatattgaacttctcatcctccagaatggtttgtttttcctctctgtcatacctcaagaggaacacaaagagtgatggcctgtcactctgatgcctctctctactcaaatggcagaaaccaaccaggtgatggccacagtggcagaacctaggaagccaagaagaaaccagagaatggagacacatggcagcaatggcaagtcatcagacccaggatttcccaaagaacactggtccaggaagatgctctgtgaaaaagtgttccctggtcggagaaatttgtgaaacactttgcataatacttaaaagaatgtatggcacatcaaaggtaatatgcaataaaagaattcatttttttaaaaccaag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]