2024-04-28 11:11:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_046622 564 bp RNA linear PRI 03-SEP-2020 DEFINITION Homo sapiens LNX1 antisense RNA 1 (LNX1-AS1), long non-coding RNA. ACCESSION NR_046622 VERSION NR_046622.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AA405946.1 and BX103714.1. ##Evidence-Data-START## Transcript exon combination :: BX103714.1, AA496074.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2148874 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1 AA405946.1 1-1 2-564 BX103714.1 1-563 FEATURES Location/Qualifiers source 1..564 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="4" /map="4q12" gene 1..564 /gene="LNX1-AS1" /note="LNX1 antisense RNA 1" /db_xref="GeneID:100873939" /db_xref="HGNC:HGNC:40345" ncRNA 1..564 /ncRNA_class="lncRNA" /gene="LNX1-AS1" /product="LNX1 antisense RNA 1" /db_xref="GeneID:100873939" /db_xref="HGNC:HGNC:40345" exon 1..51 /gene="LNX1-AS1" /inference="alignment:Splign:2.1.0" variation 3 /gene="LNX1-AS1" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1445955462" variation 4 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1725365235" variation 6 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1725365459" variation 8 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1408932471" variation 11 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:2109484306" variation 18 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725365830" variation 22 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725366007" variation 26 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725366207" variation 28 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1368149522" variation 29 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:535643322" variation 30 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1175454642" variation 35 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:2109484399" variation 40 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1286402644" variation 45 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725367180" variation 47 /gene="LNX1-AS1" /replace="g" /replace="t" /db_xref="dbSNP:1725367386" exon 52..137 /gene="LNX1-AS1" /inference="alignment:Splign:2.1.0" variation 52 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725388222" variation 54 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1725388601" variation 56 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725388904" variation 57 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725389101" variation 71 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725389394" variation 75 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1725389717" variation 76 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725390305" variation 77 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725390622" variation 80 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1725390825" variation 83 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:958663175" variation 84..86 /gene="LNX1-AS1" /replace="tt" /replace="ttt" /db_xref="dbSNP:1725391331" variation 87 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:565778221" variation 88 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:770597167" variation 89..90 /gene="LNX1-AS1" /replace="t" /replace="tt" /db_xref="dbSNP:1725392300" variation 92 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1470079951" variation 95 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:571510738" variation 96 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1725393108" variation 98 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1725393389" variation 101 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:2109485909" variation 105 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1725393680" variation 115 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725393898" variation 117 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725394110" variation 121 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1274733297" variation 133 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1579418804" variation 137 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:774392825" exon 138..266 /gene="LNX1-AS1" /inference="alignment:Splign:2.1.0" variation 138 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:2109492625" variation 141 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1176378880" variation 146 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1432190072" variation 149 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1422598304" variation 151 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1032361652" variation 152 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725529480" variation 161 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1202632464" variation 165..170 /gene="LNX1-AS1" /replace="tctc" /replace="tctctc" /db_xref="dbSNP:2109492690" variation 173 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1579421831" variation 175 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725530207" variation 182 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1472631103" variation 183 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:957603527" variation 184 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1725530880" variation 187 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:368611299" variation 188 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:571193975" variation 189 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1725531564" variation 192 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:537380059" variation 199 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725532100" variation 201 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:990340837" variation 205..210 /gene="LNX1-AS1" /replace="ctatct" /replace="ctatctatct" /db_xref="dbSNP:2109492817" variation 205 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1579421928" variation 207 /gene="LNX1-AS1" /replace="a" /replace="aa" /db_xref="dbSNP:1725532992" variation 207 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1579421940" variation 218 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1725533210" variation 219 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725533427" variation 225 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:182746263" variation 227 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:954178737" variation 228 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:148371553" variation 229 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725534399" variation 230 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1725534600" variation 233 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1254238005" variation 236 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1725535013" variation 245 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1725535208" variation 248 /gene="LNX1-AS1" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:912312799" variation 249 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1398233283" variation 250 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1403386490" variation 251 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1302686327" variation 252 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1579422031" variation 253 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:939707243" variation 254 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1725537635" variation 257 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1725537838" variation 262 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1357141499" variation 263 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1160909049" exon 267..551 /gene="LNX1-AS1" /inference="alignment:Splign:2.1.0" variation 267 /gene="LNX1-AS1" /replace="g" /replace="t" /db_xref="dbSNP:1727344284" variation 268 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1727344577" variation 274 /gene="LNX1-AS1" /replace="g" /replace="t" /db_xref="dbSNP:770716676" variation 277 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:532609411" variation 278 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1311794313" variation 284 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727345769" variation 286 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1219261645" variation 288 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1727346456" variation 289 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:2109582983" variation 291 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:2109582998" variation 296 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:184428217" variation 297 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:75492489" variation 299 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1361856221" variation 302..304 /gene="LNX1-AS1" /replace="gg" /replace="ggg" /db_xref="dbSNP:1727347561" variation 305 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1189357059" variation 313 /gene="LNX1-AS1" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1424675877" variation 314 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1257037213" variation 320 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:796791812" variation 322 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:2109583132" variation 323 /gene="LNX1-AS1" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1217820839" variation 326 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1286756329" variation 329..332 /gene="LNX1-AS1" /replace="ga" /replace="gaga" /db_xref="dbSNP:1205060810" variation 329 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1248638918" variation 332 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:2109583188" variation 335 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1267663095" variation 336 /gene="LNX1-AS1" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1245955620" variation 337 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:904676208" variation 338 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1292333136" variation 344..345 /gene="LNX1-AS1" /replace="a" /replace="aa" /db_xref="dbSNP:2109583231" variation 345 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1412488796" variation 348 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1341853691" variation 349 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1727351343" variation 351 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1298202922" variation 352 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1381645239" variation 354 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:377032985" variation 357 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1164834771" variation 362 /gene="LNX1-AS1" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1458247751" variation 368 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1727352974" variation 370 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:2109583335" variation 374 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1727353300" variation 380 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727353646" variation 381..387 /gene="LNX1-AS1" /replace="aca" /replace="acagaca" /db_xref="dbSNP:1727353961" variation 384 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1416833302" variation 386 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1727354474" variation 390 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727354699" variation 394 /gene="LNX1-AS1" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1163068620" variation 395 /gene="LNX1-AS1" /replace="g" /replace="t" /db_xref="dbSNP:1017997451" variation 396 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727355186" variation 397 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1264074537" variation 400 /gene="LNX1-AS1" /replace="" /replace="g" /db_xref="dbSNP:1727355779" variation 400 /gene="LNX1-AS1" /replace="g" /replace="t" /db_xref="dbSNP:1192540723" variation 403 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:965059060" variation 405..406 /gene="LNX1-AS1" /replace="c" /replace="cc" /db_xref="dbSNP:1727356194" variation 412 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1727356415" variation 414 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1270054453" variation 415 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:57276714" variation 422 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:147377797" variation 424 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1025303181" variation 425 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1727357626" variation 433 /gene="LNX1-AS1" /replace="" /replace="a" /db_xref="dbSNP:1727357838" variation 436 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:951415868" variation 438 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1727358285" variation 451 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1158020254" variation 453 /gene="LNX1-AS1" /replace="c" /replace="g" /db_xref="dbSNP:1727358768" variation 459 /gene="LNX1-AS1" /replace="g" /replace="t" /db_xref="dbSNP:984039382" variation 460 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1577657484" variation 462 /gene="LNX1-AS1" /replace="g" /replace="t" /db_xref="dbSNP:1270327906" variation 468 /gene="LNX1-AS1" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:565191277" variation 473 /gene="LNX1-AS1" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1324129671" variation 476 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:909738211" variation 482 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1387219937" variation 484..488 /gene="LNX1-AS1" /replace="aa" /replace="aagaa" /db_xref="dbSNP:776513621" variation 487 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1393464323" variation 490 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:1323636387" variation 491 /gene="LNX1-AS1" /replace="a" /replace="c" /db_xref="dbSNP:140956191" variation 492 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:969265114" variation 493 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1577657569" variation 495 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727362132" variation 500 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1727362350" variation 501 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727362565" variation 509 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1424575728" variation 514 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:190449864" variation 517 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727363432" variation 519 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:2109583948" variation 522 /gene="LNX1-AS1" /replace="a" /replace="t" /db_xref="dbSNP:1727363634" variation 526 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1560644537" variation 530 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1727364083" variation 543 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:1727364291" variation 544 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1727364492" variation 545 /gene="LNX1-AS1" /replace="c" /replace="t" /db_xref="dbSNP:1167447717" variation 549 /gene="LNX1-AS1" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1727364864" variation 551 /gene="LNX1-AS1" /replace="a" /replace="g" /db_xref="dbSNP:563208257" ORIGIN
gagtgaagtaactgactggacatcccaaagttaggtggtcctgagagccaggtgctgacagctgcctcaccttaagagtctcctttcgttatggcatctggaaagatctcacatggcaggcctgcttctagttccttcttcctagtgtgtctgaggaaatccaatctctcccactccagcccgcctactcattgaacatggctgctatctctgtcttctggaaacacggctccaatcctgcaacaactctatacaagagctcccagtggttcttaaccttggctgagcaacagacccatttgggaagatttttaaaaatctagcttatgagatacctcagatcaatcaatccctggcagtgggtctgctaaacatcagatacagacaaacaactgcatagatctccaactagattgaagaacaggaccctccagagagcttccaagaagacaccaacctaggcatgggtttatgttcctgacaaagaataaggattgttatgaagaatgttctattttgaattgtgaaaataattatttaaagctgtacaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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