2024-04-28 15:19:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_002989 177 bp RNA linear PRI 24-FEB-2022 DEFINITION Homo sapiens small nucleolar RNA, H/ACA box 81 (SNORA81), small nucleolar RNA. ACCESSION NR_002989 VERSION NR_002989.2 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 177) AUTHORS Dieci G, Preti M and Montanini B. TITLE Eukaryotic snoRNAs: a paradigm for gene expression flexibility JOURNAL Genomics 94 (2), 83-88 (2009) PUBMED 19446021 REMARK Review article REFERENCE 2 (bases 1 to 177) AUTHORS Lestrade L and Weber MJ. TITLE snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs JOURNAL Nucleic Acids Res 34 (Database issue), D158-D162 (2006) PUBMED 16381836 REFERENCE 3 (bases 1 to 177) AUTHORS Gu AD, Zhou H, Yu CH and Qu LH. TITLE A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes JOURNAL Nucleic Acids Res 33 (22), e194 (2005) PUBMED 16361266 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 177) AUTHORS Kiss AM, Jady BE, Bertrand E and Kiss T. TITLE Human box H/ACA pseudouridylation guide RNA machinery JOURNAL Mol Cell Biol 24 (13), 5797-5807 (2004) PUBMED 15199136 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC112907.7. On Feb 24, 2022 this sequence version replaced NR_002989.1. Summary: Small nucleolar RNAs (snoRNAs) are small noncoding RNAs involved in RNA processing. Box H/ACA snoRNAs, such as SNORA81, direct the conversion of uridine to pseudouridine at specific residues of ribosomal RNAs or small nuclear RNAs (snRNAs) (Gu et al., 2005).[supplied by OMIM, Mar 2008]. ##Evidence-Data-START## Transcript is intronless :: AM055745.1, DB160989.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-177 AC112907.7 62686-62862 c FEATURES Location/Qualifiers source 1..177 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="3" /map="3q27.3" gene 1..177 /gene="SNORA81" /gene_synonym="HBI-61" /note="small nucleolar RNA, H/ACA box 81" /db_xref="GeneID:677847" /db_xref="HGNC:HGNC:32667" /db_xref="MIM:611334" ncRNA 1..177 /ncRNA_class="snoRNA" /gene="SNORA81" /gene_synonym="HBI-61" /product="small nucleolar RNA, H/ACA box 81" /db_xref="GeneID:677847" /db_xref="HGNC:HGNC:32667" /db_xref="MIM:611334" exon 1..177 /gene="SNORA81" /gene_synonym="HBI-61" /inference="alignment:Splign:2.1.0" variation 1 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:372744748" variation 2..7 /gene="SNORA81" /gene_synonym="HBI-61" /replace="ctt" /replace="cttctt" /db_xref="dbSNP:768764819" variation 2 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1249058099" variation 4 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1393385728" variation 5 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:202149708" variation 6 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:760474964" variation 8 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:768431834" variation 9 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1196100585" variation 9 /gene="SNORA81" /gene_synonym="HBI-61" /replace="t" /replace="tttat" /db_xref="dbSNP:1560085325" variation 10..13 /gene="SNORA81" /gene_synonym="HBI-61" /replace="ataa" /replace="ataataa" /db_xref="dbSNP:1359731819" variation 10 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:776351814" variation 11 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:1344604555" variation 11 /gene="SNORA81" /gene_synonym="HBI-61" /replace="t" /replace="tt" /db_xref="dbSNP:1560085331" variation 12 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:761728419" variation 13 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="t" /db_xref="dbSNP:572865136" variation 15 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:750374080" variation 17 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:1171124595" variation 18..21 /gene="SNORA81" /gene_synonym="HBI-61" /replace="tg" /replace="tgtg" /db_xref="dbSNP:1387518826" variation 18 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1721733919" variation 19 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:376591367" variation 20 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1721734373" variation 22 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:1721734537" variation 23 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:752808710" variation 25..32 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="aaattgca" /db_xref="dbSNP:2108458840" variation 29 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:548165979" variation 31 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:1296461475" variation 33 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:756129308" variation 34 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:2108458856" variation 35 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:538395242" variation 36 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:754020514" variation 37 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:757643215" variation 39 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:376257420" variation 40..53 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="ggaccatgtcttgg" /db_xref="dbSNP:1560085370" variation 43 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:746405150" variation 44 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:772632941" variation 47 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1721736821" variation 49 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1721737053" variation 50 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1721737216" variation 51 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="t" /db_xref="dbSNP:1721737401" variation 52..53 /gene="SNORA81" /gene_synonym="HBI-61" /replace="gg" /replace="ggg" /db_xref="dbSNP:1465600479" variation 53 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1387332524" variation 54..58 /gene="SNORA81" /gene_synonym="HBI-61" /replace="tttt" /replace="ttttt" /db_xref="dbSNP:753546148" variation 55 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:1428996733" variation 58 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:941841627" variation 60 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="cc" /db_xref="dbSNP:1721738725" variation 60 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1721738478" variation 61 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1721738885" variation 62 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:779492327" variation 64 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1721739215" variation 65 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1721739395" variation 67 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:746518055" variation 68 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:73063489" variation 69 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:776443366" variation 70 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1427327558" variation 71 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1721740311" variation 73..78 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="agagta" /db_xref="dbSNP:749091759" variation 73..76 /gene="SNORA81" /gene_synonym="HBI-61" /replace="ag" /replace="agag" /db_xref="dbSNP:1560085404" variation 73 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:529062650" variation 76 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:1327885356" variation 77 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="t" /db_xref="dbSNP:769515729" variation 78..84 /gene="SNORA81" /gene_synonym="HBI-61" /replace="acaca" /replace="acacaca" /db_xref="dbSNP:757125227" variation 78 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="t" /db_xref="dbSNP:1156807363" variation 79 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:374023366" variation 80 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:1721742021" variation 83 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:1201666943" variation 84..91 /gene="SNORA81" /gene_synonym="HBI-61" /replace="aagaa" /replace="aagaagaa" /db_xref="dbSNP:1232279858" variation 86..137 /gene="SNORA81" /gene_synonym="HBI-61" /replace="gaagaaaagtaacagcactagattgtaaagactggggtggacctcttt ctta" /replace="gaagaaaagtaacagcactagattgtaaagactggggtggacctcttt cttagtgtccaatgtcctttgtcttaagatttggtgcaatatctcattagacctaaca gaatgaagttaatttttataatttctacgaagaaaagtaacagcactagattgtaaag actggggtggacctctttctta" /db_xref="dbSNP:1721742705" variation 86 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:568460640" variation 90 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1263485176" variation 92..97 /gene="SNORA81" /gene_synonym="HBI-61" /replace="aa" /replace="aagtaa" /db_xref="dbSNP:778952832" variation 92 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1235148789" variation 94 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:367929995" variation 95 /gene="SNORA81" /gene_synonym="HBI-61" /replace="t" /replace="tt" /db_xref="dbSNP:1560085446" variation 96 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:766352944" variation 101 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:1329059214" variation 102..103 /gene="SNORA81" /gene_synonym="HBI-61" /replace="" /replace="tg" /db_xref="dbSNP:1721744006" variation 103..104 /gene="SNORA81" /gene_synonym="HBI-61" /replace="" /replace="aa" /replace="aat" /db_xref="dbSNP:1721744287" variation 103 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:751386721" variation 104..105 /gene="SNORA81" /gene_synonym="HBI-61" /replace="" /replace="c" /db_xref="dbSNP:1721744746" variation 104 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:760776293" variation 105 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /db_xref="dbSNP:764112971" variation 106 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:754110393" variation 109 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:896079583" variation 112 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="t" /db_xref="dbSNP:757442610" variation 116 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1330259937" variation 117 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1020529112" variation 118..119 /gene="SNORA81" /gene_synonym="HBI-61" /replace="" /replace="tg" /db_xref="dbSNP:750389476" variation 118 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:749096721" variation 119..122 /gene="SNORA81" /gene_synonym="HBI-61" /replace="gggg" /replace="ggggg" /db_xref="dbSNP:1491005629" variation 119 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:765590984" variation 120 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:1000742171" variation 121 /gene="SNORA81" /gene_synonym="HBI-61" /replace="g" /replace="t" /db_xref="dbSNP:1199786736" variation 128 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:909782373" variation 129..136 /gene="SNORA81" /gene_synonym="HBI-61" /replace="tctt" /replace="tctttctt" /db_xref="dbSNP:757921864" variation 129 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1032108910" variation 131..136 /gene="SNORA81" /gene_synonym="HBI-61" /replace="t" /replace="tttctt" /db_xref="dbSNP:746594065" variation 131..133 /gene="SNORA81" /gene_synonym="HBI-61" /replace="t" /replace="ttt" /replace="tttt" /db_xref="dbSNP:779694284" variation 133 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:750790819" variation 135 /gene="SNORA81" /gene_synonym="HBI-61" /replace="t" /replace="tcaacat" /db_xref="dbSNP:1468605952" variation 136 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="t" /db_xref="dbSNP:1560085495" variation 137..138 /gene="SNORA81" /gene_synonym="HBI-61" /replace="aa" /replace="aaaa" /db_xref="dbSNP:768158690" variation 137 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:200165234" variation 138 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1202168319" variation 139 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1721748824" variation 140 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /db_xref="dbSNP:1721748987" variation 141 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="t" /db_xref="dbSNP:370712224" variation 142 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:550229990" variation 143 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:964774653" variation 144 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1267718596" variation 145 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:373527547" variation 146 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1721749974" variation 147 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:1215583736" variation 148 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:754581898" variation 149 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:975331551" variation 156 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:780816573" variation 157..158 /gene="SNORA81" /gene_synonym="HBI-61" /replace="tt" /replace="ttt" /db_xref="dbSNP:780942694" variation 159 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:922972944" variation 160 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:747874699" variation 161 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:768810652" variation 162 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:772682896" variation 163..165 /gene="SNORA81" /gene_synonym="HBI-61" /replace="tt" /replace="ttt" /db_xref="dbSNP:1197360908" variation 165 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1351125602" variation 169 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:1579162595" variation 170 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="t" /db_xref="dbSNP:1579162605" variation 171..172 /gene="SNORA81" /gene_synonym="HBI-61" /replace="aa" /replace="aaa" /db_xref="dbSNP:1381785904" variation 171 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="c" /db_xref="dbSNP:1407391127" variation 172 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:367623414" variation 173 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="t" /db_xref="dbSNP:1351719726" variation 174 /gene="SNORA81" /gene_synonym="HBI-61" /replace="a" /replace="g" /db_xref="dbSNP:770593023" variation 175 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1282811766" variation 176 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:774296200" polyA_site 177 /gene="SNORA81" /gene_synonym="HBI-61" /note="major polyA site" variation 177 /gene="SNORA81" /gene_synonym="HBI-61" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:907772677" ORIGIN
ccttcttgtataagcactgtgctaaaattgcagacactaggaccatgtcttggtttttgcaataatgctagcagagtacacacaagaagaaaagtaacagcactagattgtaaagactggggtggacctctttcttaatgtccaatgtcctttgtcttaagatttggtgcaatatct
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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