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2024-03-29 10:57:16, GGRNA : RefSeq release 222 (Jan, 2024)

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Results:

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Oryza sativa Japonica Group serotonin N-acetyltransferase 2, chloroplastic-like (LOC4344423), mRNA; nuclear gene for chloroplast product. (886 bp)
OsJ_25726; OsSNAT2; P0015C07.5; SNAT2" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" ORIGIN // REFERENCE 1 (bases 1 to 886) AUTHORS Hwang OJ and Back K. TITLE Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin and Accelerated Seed Deterioration in Rice JOURNAL Biomolecules 10 (1), 141 (2020) PUBMED 31952365 REMARK GeneRIF: Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin and...
Synonym: OsJ_25726; OsSNAT2; P0015C07.5; SNAT2
NM_001422370.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group serotonin N-acetyltransferase 1, chloroplastic-like (SNAT1), mRNA; nuclear gene for chloroplast product. (1480 bp)
exon 871..1466 /gene="SNAT1" /gene_synonym="GNAT5; NSI; OsJ_018182; OsJ_18949; OsSNAT1; SNAT" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 1480) AUTHORS Hwang OJ and Back K. TITLE Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin and Accelerated Seed Deterioration in Rice JOURNAL Biomolecules 10 (1), 141 (2020) PUBMED 31952365 REMARK GeneRIF: Simultaneous Suppression of Two Distinct Serotonin N-Acetyltransferase Isogenes by RNA Interference Leads to Severe Decreases in Melatonin...
Synonym: GNAT5; NSI; OsJ_018182; OsJ_18949; OsSNAT1; SNAT
NM_001402574.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group S-adenosylmethionine synthase 3-like (LOC4325163), mRNA. (1645 bp)
AUTHORS Li W, Han Y, Tao F and Chong K. TITLE Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice JOURNAL J Plant Physiol 168 (15), 1837-1843 (2011) PUBMED 21757254 REMARK GeneRIF: RNA interference (RNAi) transgenic rice with downregulated transcripts of OsSAMS1, 2 and 3 showed pleiotropic phenotypes, including dwarfism, reduced fertility, delayed germination, as well as late flowering[SAMs1,2,3]...
Synonym: METK3; OsJ_001358
NM_001409408.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X2, mRNA. (2409 bp)
misc_feature 239..520 /gene="LOC4328436" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 653..2008 /gene="LOC4328436" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of...
XM_015768524.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NRDE2 homolog (LOC4330879), mRNA. (4491 bp)
gene="LOC4330879" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 939..2108 /gene="LOC4330879" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" misc_feature 2982..>3422 /gene="LOC4330879" /note="Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]; Region: COG5191" /db_xref="CDD:227518" ORIGIN //...
XM_015771633.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352551 (LOC4352551), transcript variant X2, mRNA. (5534 bp)
misc_feature 3535 /gene="LOC4352551" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN //...
XM_015764423.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352551 (LOC4352551), transcript variant X1, mRNA. (5579 bp)
misc_feature 3580 /gene="LOC4352551" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN //...
XM_015764422.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 7-like (LOC4333232), mRNA. (3860 bp)
pfam08699" /db_xref="CDD:430160" misc_feature 1591..1929 /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1738..1740,1783..1785,1813..1815,1825..1827, 1879..1881,1897..1899,1903..1905) /gene="LOC4333232" /gene_synonym="AGO7; OsAGO7;...
Synonym: AGO7; OsAGO7; SHL4; SHO2; SHOOTLESS4
NM_001418339.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group rac-like GTP-binding protein 1 (LOC4325879), mRNA. (1173 bp)
Yamaguchi K, Imai K, Akamatsu A, Mihashi M, Hayashi N, Shimamoto K and Kawasaki T. TITLE SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice JOURNAL Plant J 70 (3), 389-397 (2012) PUBMED 22142166 REMARK GeneRIF: Reduction of OsSWAP70A and OsSWAP70B mRNA levels by RNA interference resulted in the suppression of chitin elicitor-induced defense gene expression and ROS production. It is likely that OsSWAP70 regulates immune responses through activation of OsRac1. REFERENCE 3 (bases 1 to 1173) AUTHORS Fujiwara M, Hamada S, Hiratsuka M, Fukao Y, Kawasaki T and Shimamoto K. TITLE...
Synonym: OsRac1; Rac1
NM_001401527.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute MEL1-like (LOC9269807), mRNA. (2714 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 671..1015 /gene="LOC9269807" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(818..820,863..865,899..901,911..913,965..967, 983..985,989..991) /gene="LOC9269807" /note="nucleic acid-binding interface [nucleotide...
XM_026022702.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group probable L-ascorbate peroxidase 8, chloroplastic (LOC4329643), transcript variant 2, mRNA; nuclear gene for chloroplast product. (1817 bp)
J, Chen H, Guo L, Zhu L and Zhai W. TITLE The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight JOURNAL Sci Rep 6, 26104 (2016) PUBMED 27185545 REMARK GeneRIF: The overexpressing lines exhibited increased tolerance to bacterial blight. The RNA interference (RNAi) lines were considerably more sensitive than the control plant. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1817) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W...
Synonym: APX8; OsAPx08; OsAPx8; P0470G10.5
NM_001401875.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 13-like (LOC4334374), mRNA. (4728 bp)
misc_feature 634..978 /gene="LOC4334374" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(781..783,826..828,859..861,871..873,925..927, 946..948,952..954) /gene="LOC4334374" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1114..2460 /gene="...
XM_015775890.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), transcript variant X2, mRNA. (4732 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2067..2447 /gene="LOC4336362" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_feature order(2190..2192,2250..2252,2262..2264,2316..2318, 2406..2408,2412..2414) /gene="LOC4336362" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015780808.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group probable L-ascorbate peroxidase 8, chloroplastic (LOC4329643), transcript variant 1, mRNA; nuclear gene for chloroplast product. (1820 bp)
J, Chen H, Guo L, Zhu L and Zhai W. TITLE The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight JOURNAL Sci Rep 6, 26104 (2016) PUBMED 27185545 REMARK GeneRIF: The overexpressing lines exhibited increased tolerance to bacterial blight. The RNA interference (RNAi) lines were considerably more sensitive than the control plant. Publication Status: Online-Only REFERENCE 2 (bases 1 to 1820) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W...
Synonym: APX8; OsAPx08; OsAPx8; P0470G10.5
NM_001401874.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X4, mRNA. (4938 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2198..2629 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_feature order(2336..2338,2423..2425,2435..2437,2489..2491, 2591..2593,2597..2599) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_026020835.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), mRNA. (3003 bp)
pfam08699" /db_xref="CDD:430160" misc_feature 907..1188 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1321..2676 /gene="LOC4328436" /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545" /note="PIWI domain, Argonaute-like subfamily....
Synonym: AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545
NM_001409344.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X3, mRNA. (5452 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2715..3146 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_feature order(2853..2855,2940..2942,2952..2954,3006..3008, 3108..3110,3114..3116) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015757502.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X2, mRNA. (5458 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2828..3259 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_feature order(2966..2968,3053..3055,3065..3067,3119..3121, 3221..3223,3227..3229) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015757501.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X1, mRNA. (5611 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2981..3412 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_feature order(3119..3121,3206..3208,3218..3220,3272..3274, 3374..3376,3380..3382) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015757500.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), mRNA. (5356 bp)
CDD:427264" misc_feature 2682..3062 /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:444818" misc_feature order(2805..2807,2865..2867,2877..2879,2931..2933, 3021..3023,3027..3029) /gene="LOC4336362" /gene_synonym="DCL4; OsDCL4; SHO1" /note="nucleic acid-binding interface...
Synonym: DCL4; OsDCL4; SHO1
NM_001402397.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI

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Redirect URI : http://ggrna.dbcls.jp/os/%22RNA+interference%22
lang : en | div : | spe : os | query_string : "RNA interference" | format : html | download :

0.000 | 0.000 | search_start;
1.547 | 1.547 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
2.905 | 1.357 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
2.907 | 0.002 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]