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2022-01-24 11:48:07, GGRNA : RefSeq release 209 (Nov, 2021)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X2, mRNA. (2409 bp)
misc_feature 239..520 /gene="LOC4328436" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 653..2008 /gene="LOC4328436" /note="Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal...
XM_015768524.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436), transcript variant X1, mRNA. (3093 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 923..1204 /gene="LOC4328436" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 1337..2692 /gene="LOC4328436" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing...
XM_015768522.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NRDE2 homolog (LOC4330879), mRNA. (4491 bp)
gene="LOC4330879" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 939..2108 /gene="LOC4330879" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:400637" misc_feature 2982..>3422 /gene="LOC4330879" /note="U3 small nucleolar RNA-associated protein 6; Region: U3_assoc_6; cl26712" /db_xref="CDD:421384" ORIGIN //...
XM_015771633.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 7-like (LOC4333232), mRNA. (3863 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 1603..1941 /gene="LOC4333232" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature 2077..3402 /gene="LOC4333232" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing...
XM_015773926.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352551 (LOC4352551), transcript variant X2, mRNA. (5534 bp)
misc_feature 2693..2749 /gene="LOC4352551" /note="Putative zinc-finger domain; Region: zf-C3H1; pfam10650" /db_xref="CDD:287604" misc_feature 3535 /gene="LOC4352551" /note="NRDE-2, necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:285605" ORIGIN //...
XM_015764423.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352551 (LOC4352551), transcript variant X1, mRNA. (5579 bp)
misc_feature 3580 /gene="LOC4352551" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:400637" ORIGIN //...
XM_015764422.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 3-like (LOC4336992), mRNA. (3356 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 917..1249 /gene="LOC4336992" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1052..1054,1097..1099,1130..1132,1142..1144, 1199..1201,1220..1222,1226..1228) /gene="LOC4336992" /note="nucleic acid-binding interface...
XM_015780526.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute PNH1-like (LOC9269490), transcript variant X3, mRNA. (3678 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1499..1843 /gene="LOC9269490" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1646..1648,1691..1693,1724..1726,1736..1738, 1790..1792,1811..1813,1817..1819) /gene="LOC9269490" /note="nucleic acid-binding interface...
XM_015788315.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute PNH1-like (LOC9269490), transcript variant X2, mRNA. (3440 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1261..1605 /gene="LOC9269490" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1408..1410,1453..1455,1486..1488,1498..1500, 1552..1554,1573..1575,1579..1581) /gene="LOC9269490" /note="nucleic acid-binding interface...
XM_015788316.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 1D-like (LOC4342138), mRNA. (3654 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:285861" misc_feature 1364..1708 /gene="LOC4342138" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1511..1513,1556..1558,1589..1591,1601..1603, 1655..1657,1676..1678,1682..1684) /gene="LOC4342138" /note="nucleic acid-binding interface...
XM_015787025.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute MEL1-like (LOC9269807), mRNA. (2714 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:312283" misc_feature 671..1015 /gene="LOC9269807" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(818..820,863..865,899..901,911..913,965..967, 983..985,989..991) /gene="LOC9269807" /note="nucleic acid-binding interface [nucleotide...
XM_026022702.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 13-like (LOC4334374), mRNA. (4728 bp)
misc_feature 634..978 /gene="LOC4334374" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(781..783,826..828,859..861,871..873,925..927, 946..948,952..954) /gene="LOC4334374" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1114..2460 /gene="...
XM_015775890.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein argonaute 11-like (LOC4333733), mRNA. (3638 bp)
note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:312283" misc_feature 1081..1509 /gene="LOC4333733" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1237..1239,1288..1290,1390..1392,1402..1404, 1456..1458,1477..1479,1483..1485) /gene="LOC4333733" /note="nucleic acid-binding interface...
XM_015774404.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X2, mRNA. (5458 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:308785" misc_feature 2828..3259 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:320887" misc_feature order(2966..2968,3053..3055,3065..3067,3119..3121, 3221..3223,3227..3229) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015757501.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X4, mRNA. (4938 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:308785" misc_feature 2198..2629 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:320887" misc_feature order(2336..2338,2423..2425,2435..2437,2489..2491, 2591..2593,2597..2599) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_026020835.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X1, mRNA. (5611 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:308785" misc_feature 2981..3412 /gene="LOC4348944" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:320887" misc_feature order(3119..3121,3206..3208,3218..3220,3272..3274, 3374..3376,3380..3382) /gene="LOC4348944" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015757500.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), transcript variant X1, mRNA. (5342 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:367465" misc_feature 2677..3057 /gene="LOC4336362" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:381930" misc_feature order(2800..2802,2860..2862,2872..2874,2926..2928, 3016..3018,3022..3024) /gene="LOC4336362" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015780807.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 3b (LOC4348944), transcript variant X3, mRNA. (5452 bp)
XM_015757502.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer homolog 4-like (LOC4336362), transcript variant X2, mRNA. (4732 bp)
Dicer_dimer; pfam03368" /db_xref="CDD:281376" misc_feature 2067..2447 /gene="LOC4336362" /note="PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a...; Region: PAZ; cl00301" /db_xref="CDD:294212" misc_feature order(2190..2192,2250..2252,2262..2264,2316..2318, 2406..2408,2412..2414) /gene="LOC4336362" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239207"...
XM_015780808.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/os/%22RNA+interference%22
lang : en | div : | spe : os | query_string : "RNA interference" | format : html | download :

0.000 | 0.000 | search_start;
0.077 | 0.077 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.126 | 0.049 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.128 | 0.002 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]