LOCUS       NM_001409344            3003 bp    mRNA    linear   PLN 15-JUL-2022
DEFINITION  Oryza sativa Japonica Group protein argonaute 17-like (LOC4328436),
            mRNA.
ACCESSION   NM_001409344 XM_015768522
VERSION     NM_001409344.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Pachamuthu K, Swetha C, Basu D, Das S, Singh I, Sundar VH, Sujith
            TN and Shivaprasad PV.
  TITLE     Rice-specific Argonaute 17 controls reproductive growth and
            yield-associated phenotypes
  JOURNAL   Plant Mol Biol 105 (1-2), 99-114 (2021)
   PUBMED   32964370
  REMARK    GeneRIF: Rice-specific Argonaute 17 controls reproductive growth
            and yield-associated phenotypes.
REFERENCE   2  (bases 1 to 3003)
  AUTHORS   Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N,
            Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki
            T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T,
            Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y,
            Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu
            M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda
            R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M,
            Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa
            K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K,
            Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N,
            Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki
            T, Yoshino M, Hayashizaki Y and Yasunishi A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK106247.1.
            
            On Jul 15, 2022 this sequence version replaced XM_015768522.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK106247.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMN02716058 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3003              AK106247.1         1-3003
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..3003
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="protein argonaute 17-like"
                     /db_xref="GeneID:4328436"
     exon            1..142
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            143..390
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     CDS             178..2808
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="putative leaf development protein Argonaute;
                     P0669G09.26; LOC_Os02g07310"
                     /codon_start=1
                     /product="protein argonaute 17"
                     /protein_id="NP_001396273.1"
                     /db_xref="GeneID:4328436"
                     /translation="

MESQRMTWLYDRHHSLKHNKAERQAILSTYRLAKRPNLSSEGMIGESCIVRTNCFSVHLESLDDQTIYEYDVCVTPEVGINRAVIRELVKQQKDSGLGGRLPAYDGRKRLYTSGPLPFDSHRFLVLLDSIEDSPEESRHLRVRDFVVTLKFAAKISLWTLRKFRGGKPNRESRAALRALDVVLKELPTARYTQFAGSFYSPNLGECRQLCKVLESWRGFHQRIQATQMGLQLNIDVSSSVFIKPVPVVDYVAQLLNEDILLDRPLCSTEFLKIKEALEGLKVQINGILFNTYHVQDLVHQAASFPVNFSIQYPSLPCLKVAHFGETIFLPLEVCKIAEGQCHQKQLNAKHMAALLQVARQPPNERDYNILQTVHQNKYQEDPHAKEFGIKIEEKLVSIKSRILPAPWLKFHDSGETTEFLPQLGIWNMMHKKMINGGRVKSWACVNFCWSVREYAARNFCYDLGFMCRESGMVFSVKPVLPLVIAKPGCVESALRTLHDDVMDILRPQGRKLDLLIVILPNNNGSLYGDVKRICETDIGLISQCCLAKHVLKMNKWYLASVALKINAKMGGRNTVLVDALEMRLPHVRDTPTIVFGAHVTHPHPGKANSSSIAAVVASQDWPEVTKYAGLISVQACHQESIQGLFKVQDDPERGTTTSGMIKEHLMSFYRATKRKPGRIIFYRDGVSKGQLPQALMHELGAIKMACASMGPDYNPLVTYVVLQKCRHTRLFADYYNANTHDSTANIRAGTVVDSNICQPNQFDFYLCSHRSTQGTKRPRYYHVLWDENDFLAGSFQELTNYLCYTSATCTQSISVVAPVHYARLLSSRARCYIKPRSIGDSTSHTSLPSEEDSSAASETGSLLPIKDNLKGAMFFC"

     misc_feature    490..726
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    766..906
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    907..1188
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    1321..2676
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1756..1758,1768..1770,1804..1815,1822..1824,
                     1846..1848,1855..1857,1867..1869,1879..1881)
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1969..1971,1975..1977,2227..2229,2644..2646)
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="active site"
                     /db_xref="CDD:240015"
     misc_feature    2692..2754
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6H6C3.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            391..746
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            747..880
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            881..993
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1085
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1173
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1174..1290
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1398
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1470
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..1593
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1594..1759
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1760..1881
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..2019
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2020..2162
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2163..2225
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2226..2289
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2290..2422
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2423..2496
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2591
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2592..2623
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
     exon            2624..3003
                     /gene="LOC4328436"
                     /gene_synonym="AGO17; OJ1116_A06.3; OsAGO17; OsJ_05545"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

atcgttgctcgaatatttccccgtccgctgtgcgtcgactccgactgctcgtgtgttcgcccgccgccgccgattcctatccatctcgcgagcgagcaggggcgccgtcgttcgtcctgctgcttccgccgcatccatcctgtgctaaagtttgtaccttgccttggaacattagtcatggagagtcagagaatgacctggctctacgatcgtcaccactccttgaaacataataaagctgaaagacaagccattctatcaacttatagattagcaaaacgtccaaatctctcttcagaaggtatgattggcgaaagttgcattgtgaggacaaattgtttcagtgttcatctggagtctttggatgatcagactatctatgaatatgatgtatgtgtcactcctgaggttggaatcaatcgtgctgttattagagagttggtaaaacagcagaaagattctggtttgggtggccgtcttcctgcctatgatggaaggaagaggctatacacatctggtccattgccatttgattcacatagatttcttgttctgctggatagtattgaagacagtcctgaagagtcaaggcacttgagagtgagagattttgtggtcactttaaaatttgctgcaaaaatttccttatggactttacgcaagttccgtggtgggaagccaaaccgagaaagtcgagcggccctgcgagcacttgacgttgttctaaaggaattacccactgcaaggtatacccaatttgctggttcattttactcacctaacttaggagaatgccgacaattgtgtaaggtcttggaaagctggcgtggttttcaccaaagaatacaagctactcagatgggacttcaactgaatatcgacgtgtcatcatcagtgttcatcaagcctgtacctgtggttgactatgttgcacagcttcttaacgaggacatcttattagacagaccattatgtagcactgagttcttgaagattaaggaggctctagaaggtctgaaggttcagattaatggcattttgttcaacacatatcatgtacaagaccttgtccatcaagcagcaagttttccagttaactttagtattcagtacccatctttgccttgcttgaaagtggctcattttggggagacaatatttctgccattggaggtctgtaaaattgctgagggacaatgtcaccagaaacagctcaatgcaaaacatatggctgctcttcttcaggtagctcgacagccccctaatgagcgtgactacaacattctgcagactgtgcatcagaacaaataccaggaggacccacatgctaaagagtttggcattaaaattgaggaaaaacttgtatcaattaaatctcgcatcctacctgctccttggcttaaattccatgacagtggcgagacgacagaattcttgccacaacttggcatatggaatatgatgcataagaaaatgatcaatggtgggagagtgaaaagctgggcatgtgttaacttttgctggagtgtacgggagtatgctgctaggaatttctgttatgaccttggctttatgtgccgagaatctgggatggtcttttcagttaaacctgtgcttcctctagtgattgctaaacctggatgtgtagaatctgcactcaggacacttcatgacgatgtcatggacatacttagaccacagggcagaaaacttgacctgctgattgtaatattgcctaacaacaatggatctctttatggtgatgtcaaaagaatatgtgagacagatattggactgatctctcaatgttgtcttgcaaaacatgttcttaagatgaacaagtggtatcttgcaagcgttgcccttaaaatcaatgctaagatgggcggaagaaatactgtactggttgatgctttagaaatgagactcccccatgttagggatacaccaactattgtatttggtgctcatgtcacccatccacatccaggaaaagctaatagttcttccattgctgctgttgttgcttctcaagactggcccgaggttaccaagtatgctggtttaatcagtgtgcaagcgtgccaccaggagtcaatacaaggtctttttaaagtccaggatgatccggaaagaggaaccacaactagcggaatgatcaaagagcatctcatgtctttctatcgagccactaaacggaagcccggaaggattatattttacagggatggtgtgagcaaaggacagctccctcaggctttgatgcacgaacttggtgccatcaaaatggcgtgtgcatctatgggacccgattataatccattagttacatacgtggtgctccagaagtgtcgccatacacgtctgtttgctgactactataatgcgaatactcatgattcaactgcaaacatacgggctggtactgtggttgattcaaatatttgccaaccaaatcagtttgatttctacttgtgtagccaccgcagcacgcagggaactaagcggcccaggtattatcatgttctgtgggacgagaacgacttcttggctggttctttccaagagctcacaaactacctctgctacacctccgcaacttgcacccaatccatatcagttgtggcccctgtgcactacgctcgtcttctgtcatcacgagctcgatgttacattaaaccacgctcgattggcgattcaacgagccacacctccttgccttctgaagaagatagcagcgcagcctcagagactggcagtcttcttcctataaaggataatttgaaaggggccatgtttttctgctagaactgctgccagcaagatctgctgtcattttgtacgtggtctgtacagtcccacagttcttggtagatttgactgagcagtcaaaactcattatcgttcagcgagattcaggtgtagcagctgtaggattactgataaacattgttcctgtaccgatactttagaagaaatgaattaattatatcttagaacagc

//